Job ID = 5720170 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:51:11 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:53:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:59:41 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:01:17 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:05:25 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:07:05 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:09:27 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:15:04 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:17:03 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:23:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:25:04 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:28:59 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:33:04 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:39:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:41:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:43:08 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:46:23 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:53:27 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 59,558,567 reads read : 119,117,134 reads written : 119,117,134 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:46:08 59558567 reads; of these: 59558567 (100.00%) were paired; of these: 21525760 (36.14%) aligned concordantly 0 times 32183819 (54.04%) aligned concordantly exactly 1 time 5848988 (9.82%) aligned concordantly >1 times ---- 21525760 pairs aligned concordantly 0 times; of these: 11615957 (53.96%) aligned discordantly 1 time ---- 9909803 pairs aligned 0 times concordantly or discordantly; of these: 19819606 mates make up the pairs; of these: 14468176 (73.00%) aligned 0 times 2245134 (11.33%) aligned exactly 1 time 3106296 (15.67%) aligned >1 times 87.85% overall alignment rate Time searching: 01:46:08 Overall time: 01:46:08 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 76 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7273690 / 49254153 = 0.1477 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:21:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:21:26: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:21:26: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:21:34: 1000000 INFO @ Thu, 16 Apr 2020 01:21:43: 2000000 INFO @ Thu, 16 Apr 2020 01:21:52: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:21:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:21:56: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:21:56: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:22:01: 4000000 INFO @ Thu, 16 Apr 2020 01:22:05: 1000000 INFO @ Thu, 16 Apr 2020 01:22:10: 5000000 INFO @ Thu, 16 Apr 2020 01:22:13: 2000000 INFO @ Thu, 16 Apr 2020 01:22:20: 6000000 INFO @ Thu, 16 Apr 2020 01:22:22: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:22:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:22:26: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:22:26: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:22:29: 7000000 INFO @ Thu, 16 Apr 2020 01:22:31: 4000000 INFO @ Thu, 16 Apr 2020 01:22:34: 1000000 INFO @ Thu, 16 Apr 2020 01:22:38: 8000000 INFO @ Thu, 16 Apr 2020 01:22:39: 5000000 INFO @ Thu, 16 Apr 2020 01:22:42: 2000000 INFO @ Thu, 16 Apr 2020 01:22:47: 9000000 INFO @ Thu, 16 Apr 2020 01:22:48: 6000000 INFO @ Thu, 16 Apr 2020 01:22:49: 3000000 INFO @ Thu, 16 Apr 2020 01:22:56: 10000000 INFO @ Thu, 16 Apr 2020 01:22:57: 4000000 INFO @ Thu, 16 Apr 2020 01:22:57: 7000000 INFO @ Thu, 16 Apr 2020 01:23:05: 5000000 INFO @ Thu, 16 Apr 2020 01:23:06: 11000000 INFO @ Thu, 16 Apr 2020 01:23:06: 8000000 INFO @ Thu, 16 Apr 2020 01:23:12: 6000000 INFO @ Thu, 16 Apr 2020 01:23:14: 9000000 INFO @ Thu, 16 Apr 2020 01:23:15: 12000000 INFO @ Thu, 16 Apr 2020 01:23:20: 7000000 INFO @ Thu, 16 Apr 2020 01:23:23: 10000000 INFO @ Thu, 16 Apr 2020 01:23:23: 13000000 INFO @ Thu, 16 Apr 2020 01:23:28: 8000000 INFO @ Thu, 16 Apr 2020 01:23:32: 11000000 INFO @ Thu, 16 Apr 2020 01:23:32: 14000000 INFO @ Thu, 16 Apr 2020 01:23:35: 9000000 INFO @ Thu, 16 Apr 2020 01:23:40: 12000000 INFO @ Thu, 16 Apr 2020 01:23:41: 15000000 INFO @ Thu, 16 Apr 2020 01:23:43: 10000000 INFO @ Thu, 16 Apr 2020 01:23:49: 13000000 INFO @ Thu, 16 Apr 2020 01:23:50: 16000000 INFO @ Thu, 16 Apr 2020 01:23:51: 11000000 INFO @ Thu, 16 Apr 2020 01:23:58: 14000000 INFO @ Thu, 16 Apr 2020 01:23:59: 17000000 INFO @ Thu, 16 Apr 2020 01:23:59: 12000000 INFO @ Thu, 16 Apr 2020 01:24:06: 13000000 INFO @ Thu, 16 Apr 2020 01:24:06: 15000000 INFO @ Thu, 16 Apr 2020 01:24:07: 18000000 INFO @ Thu, 16 Apr 2020 01:24:14: 14000000 INFO @ Thu, 16 Apr 2020 01:24:15: 16000000 INFO @ Thu, 16 Apr 2020 01:24:16: 19000000 INFO @ Thu, 16 Apr 2020 01:24:21: 15000000 INFO @ Thu, 16 Apr 2020 01:24:24: 17000000 INFO @ Thu, 16 Apr 2020 01:24:25: 20000000 INFO @ Thu, 16 Apr 2020 01:24:29: 16000000 INFO @ Thu, 16 Apr 2020 01:24:32: 18000000 INFO @ Thu, 16 Apr 2020 01:24:34: 21000000 INFO @ Thu, 16 Apr 2020 01:24:37: 17000000 INFO @ Thu, 16 Apr 2020 01:24:41: 19000000 INFO @ Thu, 16 Apr 2020 01:24:43: 22000000 INFO @ Thu, 16 Apr 2020 01:24:44: 18000000 INFO @ Thu, 16 Apr 2020 01:24:50: 20000000 INFO @ Thu, 16 Apr 2020 01:24:52: 23000000 INFO @ Thu, 16 Apr 2020 01:24:52: 19000000 INFO @ Thu, 16 Apr 2020 01:24:59: 21000000 INFO @ Thu, 16 Apr 2020 01:25:00: 20000000 INFO @ Thu, 16 Apr 2020 01:25:01: 24000000 INFO @ Thu, 16 Apr 2020 01:25:07: 21000000 INFO @ Thu, 16 Apr 2020 01:25:07: 22000000 INFO @ Thu, 16 Apr 2020 01:25:10: 25000000 INFO @ Thu, 16 Apr 2020 01:25:15: 22000000 INFO @ Thu, 16 Apr 2020 01:25:16: 23000000 INFO @ Thu, 16 Apr 2020 01:25:19: 26000000 INFO @ Thu, 16 Apr 2020 01:25:23: 23000000 INFO @ Thu, 16 Apr 2020 01:25:25: 24000000 INFO @ Thu, 16 Apr 2020 01:25:28: 27000000 INFO @ Thu, 16 Apr 2020 01:25:30: 24000000 INFO @ Thu, 16 Apr 2020 01:25:33: 25000000 INFO @ Thu, 16 Apr 2020 01:25:37: 28000000 INFO @ Thu, 16 Apr 2020 01:25:38: 25000000 INFO @ Thu, 16 Apr 2020 01:25:42: 26000000 INFO @ Thu, 16 Apr 2020 01:25:46: 29000000 INFO @ Thu, 16 Apr 2020 01:25:46: 26000000 INFO @ Thu, 16 Apr 2020 01:25:51: 27000000 INFO @ Thu, 16 Apr 2020 01:25:54: 27000000 INFO @ Thu, 16 Apr 2020 01:25:54: 30000000 INFO @ Thu, 16 Apr 2020 01:26:00: 28000000 INFO @ Thu, 16 Apr 2020 01:26:01: 28000000 INFO @ Thu, 16 Apr 2020 01:26:03: 31000000 INFO @ Thu, 16 Apr 2020 01:26:09: 29000000 INFO @ Thu, 16 Apr 2020 01:26:10: 29000000 INFO @ Thu, 16 Apr 2020 01:26:12: 32000000 INFO @ Thu, 16 Apr 2020 01:26:17: 30000000 INFO @ Thu, 16 Apr 2020 01:26:18: 30000000 INFO @ Thu, 16 Apr 2020 01:26:21: 33000000 INFO @ Thu, 16 Apr 2020 01:26:26: 31000000 INFO @ Thu, 16 Apr 2020 01:26:27: 31000000 INFO @ Thu, 16 Apr 2020 01:26:30: 34000000 INFO @ Thu, 16 Apr 2020 01:26:35: 32000000 INFO @ Thu, 16 Apr 2020 01:26:35: 32000000 INFO @ Thu, 16 Apr 2020 01:26:39: 35000000 INFO @ Thu, 16 Apr 2020 01:26:43: 33000000 INFO @ Thu, 16 Apr 2020 01:26:44: 33000000 INFO @ Thu, 16 Apr 2020 01:26:48: 36000000 INFO @ Thu, 16 Apr 2020 01:26:52: 34000000 INFO @ Thu, 16 Apr 2020 01:26:53: 34000000 INFO @ Thu, 16 Apr 2020 01:26:57: 37000000 INFO @ Thu, 16 Apr 2020 01:27:01: 35000000 INFO @ Thu, 16 Apr 2020 01:27:02: 35000000 INFO @ Thu, 16 Apr 2020 01:27:06: 38000000 INFO @ Thu, 16 Apr 2020 01:27:10: 36000000 INFO @ Thu, 16 Apr 2020 01:27:10: 36000000 INFO @ Thu, 16 Apr 2020 01:27:15: 39000000 INFO @ Thu, 16 Apr 2020 01:27:19: 37000000 INFO @ Thu, 16 Apr 2020 01:27:19: 37000000 INFO @ Thu, 16 Apr 2020 01:27:24: 40000000 INFO @ Thu, 16 Apr 2020 01:27:28: 38000000 INFO @ Thu, 16 Apr 2020 01:27:28: 38000000 INFO @ Thu, 16 Apr 2020 01:27:33: 41000000 INFO @ Thu, 16 Apr 2020 01:27:36: 39000000 INFO @ Thu, 16 Apr 2020 01:27:37: 39000000 INFO @ Thu, 16 Apr 2020 01:27:42: 42000000 INFO @ Thu, 16 Apr 2020 01:27:45: 40000000 INFO @ Thu, 16 Apr 2020 01:27:46: 40000000 INFO @ Thu, 16 Apr 2020 01:27:51: 43000000 INFO @ Thu, 16 Apr 2020 01:27:54: 41000000 INFO @ Thu, 16 Apr 2020 01:27:55: 41000000 INFO @ Thu, 16 Apr 2020 01:28:00: 44000000 INFO @ Thu, 16 Apr 2020 01:28:04: 42000000 INFO @ Thu, 16 Apr 2020 01:28:04: 42000000 INFO @ Thu, 16 Apr 2020 01:28:10: 45000000 INFO @ Thu, 16 Apr 2020 01:28:13: 43000000 INFO @ Thu, 16 Apr 2020 01:28:13: 43000000 INFO @ Thu, 16 Apr 2020 01:28:19: 46000000 INFO @ Thu, 16 Apr 2020 01:28:22: 44000000 INFO @ Thu, 16 Apr 2020 01:28:22: 44000000 INFO @ Thu, 16 Apr 2020 01:28:28: 47000000 INFO @ Thu, 16 Apr 2020 01:28:31: 45000000 INFO @ Thu, 16 Apr 2020 01:28:32: 45000000 INFO @ Thu, 16 Apr 2020 01:28:37: 48000000 INFO @ Thu, 16 Apr 2020 01:28:40: 46000000 INFO @ Thu, 16 Apr 2020 01:28:41: 46000000 INFO @ Thu, 16 Apr 2020 01:28:46: 49000000 INFO @ Thu, 16 Apr 2020 01:28:49: 47000000 INFO @ Thu, 16 Apr 2020 01:28:50: 47000000 INFO @ Thu, 16 Apr 2020 01:28:56: 50000000 INFO @ Thu, 16 Apr 2020 01:28:59: 48000000 INFO @ Thu, 16 Apr 2020 01:28:59: 48000000 INFO @ Thu, 16 Apr 2020 01:29:05: 51000000 INFO @ Thu, 16 Apr 2020 01:29:08: 49000000 INFO @ Thu, 16 Apr 2020 01:29:09: 49000000 INFO @ Thu, 16 Apr 2020 01:29:14: 52000000 INFO @ Thu, 16 Apr 2020 01:29:17: 50000000 INFO @ Thu, 16 Apr 2020 01:29:18: 50000000 INFO @ Thu, 16 Apr 2020 01:29:24: 53000000 INFO @ Thu, 16 Apr 2020 01:29:26: 51000000 INFO @ Thu, 16 Apr 2020 01:29:27: 51000000 INFO @ Thu, 16 Apr 2020 01:29:33: 54000000 INFO @ Thu, 16 Apr 2020 01:29:35: 52000000 INFO @ Thu, 16 Apr 2020 01:29:36: 52000000 INFO @ Thu, 16 Apr 2020 01:29:42: 55000000 INFO @ Thu, 16 Apr 2020 01:29:44: 53000000 INFO @ Thu, 16 Apr 2020 01:29:45: 53000000 INFO @ Thu, 16 Apr 2020 01:29:51: 56000000 INFO @ Thu, 16 Apr 2020 01:29:53: 54000000 INFO @ Thu, 16 Apr 2020 01:29:54: 54000000 INFO @ Thu, 16 Apr 2020 01:30:01: 57000000 INFO @ Thu, 16 Apr 2020 01:30:02: 55000000 INFO @ Thu, 16 Apr 2020 01:30:03: 55000000 INFO @ Thu, 16 Apr 2020 01:30:10: 58000000 INFO @ Thu, 16 Apr 2020 01:30:12: 56000000 INFO @ Thu, 16 Apr 2020 01:30:12: 56000000 INFO @ Thu, 16 Apr 2020 01:30:19: 59000000 INFO @ Thu, 16 Apr 2020 01:30:21: 57000000 INFO @ Thu, 16 Apr 2020 01:30:21: 57000000 INFO @ Thu, 16 Apr 2020 01:30:28: 60000000 INFO @ Thu, 16 Apr 2020 01:30:30: 58000000 INFO @ Thu, 16 Apr 2020 01:30:30: 58000000 INFO @ Thu, 16 Apr 2020 01:30:37: 61000000 INFO @ Thu, 16 Apr 2020 01:30:39: 59000000 INFO @ Thu, 16 Apr 2020 01:30:40: 59000000 INFO @ Thu, 16 Apr 2020 01:30:46: 62000000 INFO @ Thu, 16 Apr 2020 01:30:48: 60000000 INFO @ Thu, 16 Apr 2020 01:30:49: 60000000 INFO @ Thu, 16 Apr 2020 01:30:55: 63000000 INFO @ Thu, 16 Apr 2020 01:30:57: 61000000 INFO @ Thu, 16 Apr 2020 01:30:58: 61000000 INFO @ Thu, 16 Apr 2020 01:31:04: 64000000 INFO @ Thu, 16 Apr 2020 01:31:06: 62000000 INFO @ Thu, 16 Apr 2020 01:31:07: 62000000 INFO @ Thu, 16 Apr 2020 01:31:13: 65000000 INFO @ Thu, 16 Apr 2020 01:31:15: 63000000 INFO @ Thu, 16 Apr 2020 01:31:16: 63000000 INFO @ Thu, 16 Apr 2020 01:31:22: 66000000 INFO @ Thu, 16 Apr 2020 01:31:24: 64000000 INFO @ Thu, 16 Apr 2020 01:31:25: 64000000 INFO @ Thu, 16 Apr 2020 01:31:31: 67000000 INFO @ Thu, 16 Apr 2020 01:31:33: 65000000 INFO @ Thu, 16 Apr 2020 01:31:34: 65000000 INFO @ Thu, 16 Apr 2020 01:31:40: 68000000 INFO @ Thu, 16 Apr 2020 01:31:42: 66000000 INFO @ Thu, 16 Apr 2020 01:31:43: 66000000 INFO @ Thu, 16 Apr 2020 01:31:49: 69000000 INFO @ Thu, 16 Apr 2020 01:31:51: 67000000 INFO @ Thu, 16 Apr 2020 01:31:52: 67000000 INFO @ Thu, 16 Apr 2020 01:31:58: 70000000 INFO @ Thu, 16 Apr 2020 01:32:00: 68000000 INFO @ Thu, 16 Apr 2020 01:32:00: 68000000 INFO @ Thu, 16 Apr 2020 01:32:07: 71000000 INFO @ Thu, 16 Apr 2020 01:32:08: 69000000 INFO @ Thu, 16 Apr 2020 01:32:09: 69000000 INFO @ Thu, 16 Apr 2020 01:32:16: 72000000 INFO @ Thu, 16 Apr 2020 01:32:17: 70000000 INFO @ Thu, 16 Apr 2020 01:32:18: 70000000 INFO @ Thu, 16 Apr 2020 01:32:25: 73000000 INFO @ Thu, 16 Apr 2020 01:32:26: 71000000 INFO @ Thu, 16 Apr 2020 01:32:27: 71000000 INFO @ Thu, 16 Apr 2020 01:32:34: 74000000 INFO @ Thu, 16 Apr 2020 01:32:35: 72000000 INFO @ Thu, 16 Apr 2020 01:32:36: 72000000 INFO @ Thu, 16 Apr 2020 01:32:43: 75000000 INFO @ Thu, 16 Apr 2020 01:32:44: 73000000 INFO @ Thu, 16 Apr 2020 01:32:45: 73000000 INFO @ Thu, 16 Apr 2020 01:32:52: 76000000 INFO @ Thu, 16 Apr 2020 01:32:53: 74000000 INFO @ Thu, 16 Apr 2020 01:32:54: 74000000 INFO @ Thu, 16 Apr 2020 01:33:01: 77000000 INFO @ Thu, 16 Apr 2020 01:33:02: 75000000 INFO @ Thu, 16 Apr 2020 01:33:03: 75000000 INFO @ Thu, 16 Apr 2020 01:33:10: 78000000 INFO @ Thu, 16 Apr 2020 01:33:11: 76000000 INFO @ Thu, 16 Apr 2020 01:33:12: 76000000 INFO @ Thu, 16 Apr 2020 01:33:19: 79000000 INFO @ Thu, 16 Apr 2020 01:33:20: 77000000 INFO @ Thu, 16 Apr 2020 01:33:21: 77000000 INFO @ Thu, 16 Apr 2020 01:33:29: 80000000 INFO @ Thu, 16 Apr 2020 01:33:29: 78000000 INFO @ Thu, 16 Apr 2020 01:33:30: 78000000 INFO @ Thu, 16 Apr 2020 01:33:37: 81000000 INFO @ Thu, 16 Apr 2020 01:33:38: 79000000 INFO @ Thu, 16 Apr 2020 01:33:39: 79000000 INFO @ Thu, 16 Apr 2020 01:33:46: 82000000 INFO @ Thu, 16 Apr 2020 01:33:47: 80000000 INFO @ Thu, 16 Apr 2020 01:33:48: 80000000 INFO @ Thu, 16 Apr 2020 01:33:56: 83000000 INFO @ Thu, 16 Apr 2020 01:33:56: 81000000 INFO @ Thu, 16 Apr 2020 01:33:57: 81000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 01:34:05: 84000000 INFO @ Thu, 16 Apr 2020 01:34:05: 82000000 INFO @ Thu, 16 Apr 2020 01:34:06: 82000000 INFO @ Thu, 16 Apr 2020 01:34:14: 85000000 INFO @ Thu, 16 Apr 2020 01:34:14: 83000000 INFO @ Thu, 16 Apr 2020 01:34:15: 83000000 INFO @ Thu, 16 Apr 2020 01:34:23: 86000000 INFO @ Thu, 16 Apr 2020 01:34:23: 84000000 INFO @ Thu, 16 Apr 2020 01:34:24: 84000000 INFO @ Thu, 16 Apr 2020 01:34:32: 87000000 INFO @ Thu, 16 Apr 2020 01:34:32: 85000000 INFO @ Thu, 16 Apr 2020 01:34:33: 85000000 INFO @ Thu, 16 Apr 2020 01:34:41: 88000000 INFO @ Thu, 16 Apr 2020 01:34:41: 86000000 INFO @ Thu, 16 Apr 2020 01:34:42: 86000000 INFO @ Thu, 16 Apr 2020 01:34:50: 89000000 INFO @ Thu, 16 Apr 2020 01:34:50: 87000000 INFO @ Thu, 16 Apr 2020 01:34:51: 87000000 INFO @ Thu, 16 Apr 2020 01:34:59: 90000000 INFO @ Thu, 16 Apr 2020 01:34:59: 88000000 INFO @ Thu, 16 Apr 2020 01:35:00: 88000000 INFO @ Thu, 16 Apr 2020 01:35:00: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:35:00: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:35:00: #1 total tags in treatment: 32208577 INFO @ Thu, 16 Apr 2020 01:35:00: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:35:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:35:00: #1 tags after filtering in treatment: 25353290 INFO @ Thu, 16 Apr 2020 01:35:00: #1 Redundant rate of treatment: 0.21 INFO @ Thu, 16 Apr 2020 01:35:00: #1 finished! INFO @ Thu, 16 Apr 2020 01:35:00: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:35:00: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:35:02: #2 number of paired peaks: 161 WARNING @ Thu, 16 Apr 2020 01:35:02: Fewer paired peaks (161) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 161 pairs to build model! INFO @ Thu, 16 Apr 2020 01:35:02: start model_add_line... INFO @ Thu, 16 Apr 2020 01:35:02: start X-correlation... INFO @ Thu, 16 Apr 2020 01:35:02: end of X-cor INFO @ Thu, 16 Apr 2020 01:35:02: #2 finished! INFO @ Thu, 16 Apr 2020 01:35:02: #2 predicted fragment length is 185 bps INFO @ Thu, 16 Apr 2020 01:35:02: #2 alternative fragment length(s) may be 3,168,185,208 bps INFO @ Thu, 16 Apr 2020 01:35:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.05_model.r WARNING @ Thu, 16 Apr 2020 01:35:02: #2 Since the d (185) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:35:02: #2 You may need to consider one of the other alternative d(s): 3,168,185,208 WARNING @ Thu, 16 Apr 2020 01:35:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:35:02: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:35:02: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:35:08: 89000000 INFO @ Thu, 16 Apr 2020 01:35:09: 89000000 INFO @ Thu, 16 Apr 2020 01:35:17: 90000000 INFO @ Thu, 16 Apr 2020 01:35:17: 90000000 INFO @ Thu, 16 Apr 2020 01:35:18: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:35:18: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:35:18: #1 total tags in treatment: 32208577 INFO @ Thu, 16 Apr 2020 01:35:18: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:35:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:35:18: #1 tags after filtering in treatment: 25353290 INFO @ Thu, 16 Apr 2020 01:35:18: #1 Redundant rate of treatment: 0.21 INFO @ Thu, 16 Apr 2020 01:35:18: #1 finished! INFO @ Thu, 16 Apr 2020 01:35:18: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:35:18: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:35:18: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:35:18: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:35:18: #1 total tags in treatment: 32208577 INFO @ Thu, 16 Apr 2020 01:35:18: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:35:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:35:19: #1 tags after filtering in treatment: 25353290 INFO @ Thu, 16 Apr 2020 01:35:19: #1 Redundant rate of treatment: 0.21 INFO @ Thu, 16 Apr 2020 01:35:19: #1 finished! INFO @ Thu, 16 Apr 2020 01:35:19: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:35:19: #2 looking for paired plus/minus strand peaks... BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 01:35:20: #2 number of paired peaks: 161 WARNING @ Thu, 16 Apr 2020 01:35:20: Fewer paired peaks (161) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 161 pairs to build model! INFO @ Thu, 16 Apr 2020 01:35:20: start model_add_line... INFO @ Thu, 16 Apr 2020 01:35:20: start X-correlation... INFO @ Thu, 16 Apr 2020 01:35:20: end of X-cor INFO @ Thu, 16 Apr 2020 01:35:20: #2 finished! INFO @ Thu, 16 Apr 2020 01:35:20: #2 predicted fragment length is 185 bps INFO @ Thu, 16 Apr 2020 01:35:20: #2 alternative fragment length(s) may be 3,168,185,208 bps INFO @ Thu, 16 Apr 2020 01:35:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.10_model.r WARNING @ Thu, 16 Apr 2020 01:35:20: #2 Since the d (185) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:35:20: #2 You may need to consider one of the other alternative d(s): 3,168,185,208 WARNING @ Thu, 16 Apr 2020 01:35:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:35:20: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:35:20: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:35:21: #2 number of paired peaks: 161 WARNING @ Thu, 16 Apr 2020 01:35:21: Fewer paired peaks (161) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 161 pairs to build model! INFO @ Thu, 16 Apr 2020 01:35:21: start model_add_line... INFO @ Thu, 16 Apr 2020 01:35:21: start X-correlation... INFO @ Thu, 16 Apr 2020 01:35:21: end of X-cor INFO @ Thu, 16 Apr 2020 01:35:21: #2 finished! INFO @ Thu, 16 Apr 2020 01:35:21: #2 predicted fragment length is 185 bps INFO @ Thu, 16 Apr 2020 01:35:21: #2 alternative fragment length(s) may be 3,168,185,208 bps INFO @ Thu, 16 Apr 2020 01:35:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.20_model.r WARNING @ Thu, 16 Apr 2020 01:35:21: #2 Since the d (185) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:35:21: #2 You may need to consider one of the other alternative d(s): 3,168,185,208 WARNING @ Thu, 16 Apr 2020 01:35:21: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:35:21: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:35:21: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:35:46: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:36:04: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:36:06: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:36:08: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.05_peaks.xls INFO @ Thu, 16 Apr 2020 01:36:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:36:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.05_summits.bed INFO @ Thu, 16 Apr 2020 01:36:08: Done! pass1 - making usageList (7 chroms): 5 millis pass2 - checking and writing primary data (31692 records, 4 fields): 26 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 01:36:24: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.20_peaks.xls INFO @ Thu, 16 Apr 2020 01:36:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:36:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.20_summits.bed INFO @ Thu, 16 Apr 2020 01:36:24: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (1840 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 01:36:27: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.10_peaks.xls INFO @ Thu, 16 Apr 2020 01:36:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:36:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619541/SRX6619541.10_summits.bed INFO @ Thu, 16 Apr 2020 01:36:27: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (15145 records, 4 fields): 13 millis CompletedMACS2peakCalling