Job ID = 1292882 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 25,345,452 reads read : 50,690,904 reads written : 50,690,904 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:28:52 25345452 reads; of these: 25345452 (100.00%) were paired; of these: 1074139 (4.24%) aligned concordantly 0 times 20914602 (82.52%) aligned concordantly exactly 1 time 3356711 (13.24%) aligned concordantly >1 times ---- 1074139 pairs aligned concordantly 0 times; of these: 554488 (51.62%) aligned discordantly 1 time ---- 519651 pairs aligned 0 times concordantly or discordantly; of these: 1039302 mates make up the pairs; of these: 575719 (55.39%) aligned 0 times 293922 (28.28%) aligned exactly 1 time 169661 (16.32%) aligned >1 times 98.86% overall alignment rate Time searching: 00:28:52 Overall time: 00:28:52 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 416108 / 24809032 = 0.0168 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 02 Jun 2019 21:54:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 21:54:58: #1 read tag files... INFO @ Sun, 02 Jun 2019 21:54:58: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 21:54:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 21:54:58: #1 read tag files... INFO @ Sun, 02 Jun 2019 21:54:58: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 21:54:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 21:54:58: #1 read tag files... INFO @ Sun, 02 Jun 2019 21:54:58: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 21:55:04: 1000000 INFO @ Sun, 02 Jun 2019 21:55:05: 1000000 INFO @ Sun, 02 Jun 2019 21:55:08: 1000000 INFO @ Sun, 02 Jun 2019 21:55:10: 2000000 INFO @ Sun, 02 Jun 2019 21:55:12: 2000000 INFO @ Sun, 02 Jun 2019 21:55:16: 2000000 INFO @ Sun, 02 Jun 2019 21:55:16: 3000000 INFO @ Sun, 02 Jun 2019 21:55:19: 3000000 INFO @ Sun, 02 Jun 2019 21:55:22: 4000000 INFO @ Sun, 02 Jun 2019 21:55:25: 3000000 INFO @ Sun, 02 Jun 2019 21:55:26: 4000000 INFO @ Sun, 02 Jun 2019 21:55:28: 5000000 INFO @ Sun, 02 Jun 2019 21:55:33: 5000000 INFO @ Sun, 02 Jun 2019 21:55:34: 4000000 INFO @ Sun, 02 Jun 2019 21:55:35: 6000000 INFO @ Sun, 02 Jun 2019 21:55:41: 6000000 INFO @ Sun, 02 Jun 2019 21:55:41: 7000000 INFO @ Sun, 02 Jun 2019 21:55:42: 5000000 INFO @ Sun, 02 Jun 2019 21:55:47: 8000000 INFO @ Sun, 02 Jun 2019 21:55:49: 7000000 INFO @ Sun, 02 Jun 2019 21:55:50: 6000000 INFO @ Sun, 02 Jun 2019 21:55:54: 9000000 INFO @ Sun, 02 Jun 2019 21:55:56: 8000000 INFO @ Sun, 02 Jun 2019 21:55:59: 7000000 INFO @ Sun, 02 Jun 2019 21:56:00: 10000000 INFO @ Sun, 02 Jun 2019 21:56:03: 9000000 INFO @ Sun, 02 Jun 2019 21:56:07: 11000000 INFO @ Sun, 02 Jun 2019 21:56:08: 8000000 INFO @ Sun, 02 Jun 2019 21:56:10: 10000000 INFO @ Sun, 02 Jun 2019 21:56:15: 12000000 INFO @ Sun, 02 Jun 2019 21:56:16: 9000000 INFO @ Sun, 02 Jun 2019 21:56:18: 11000000 INFO @ Sun, 02 Jun 2019 21:56:21: 13000000 INFO @ Sun, 02 Jun 2019 21:56:25: 12000000 INFO @ Sun, 02 Jun 2019 21:56:25: 10000000 INFO @ Sun, 02 Jun 2019 21:56:28: 14000000 INFO @ Sun, 02 Jun 2019 21:56:32: 13000000 INFO @ Sun, 02 Jun 2019 21:56:34: 15000000 INFO @ Sun, 02 Jun 2019 21:56:34: 11000000 INFO @ Sun, 02 Jun 2019 21:56:39: 14000000 INFO @ Sun, 02 Jun 2019 21:56:41: 16000000 INFO @ Sun, 02 Jun 2019 21:56:43: 12000000 INFO @ Sun, 02 Jun 2019 21:56:47: 17000000 INFO @ Sun, 02 Jun 2019 21:56:47: 15000000 INFO @ Sun, 02 Jun 2019 21:56:52: 13000000 INFO @ Sun, 02 Jun 2019 21:56:53: 18000000 INFO @ Sun, 02 Jun 2019 21:56:54: 16000000 INFO @ Sun, 02 Jun 2019 21:56:59: 19000000 INFO @ Sun, 02 Jun 2019 21:57:00: 14000000 INFO @ Sun, 02 Jun 2019 21:57:01: 17000000 INFO @ Sun, 02 Jun 2019 21:57:05: 20000000 INFO @ Sun, 02 Jun 2019 21:57:08: 18000000 INFO @ Sun, 02 Jun 2019 21:57:08: 15000000 INFO @ Sun, 02 Jun 2019 21:57:11: 21000000 INFO @ Sun, 02 Jun 2019 21:57:16: 19000000 INFO @ Sun, 02 Jun 2019 21:57:17: 16000000 INFO @ Sun, 02 Jun 2019 21:57:18: 22000000 INFO @ Sun, 02 Jun 2019 21:57:23: 20000000 INFO @ Sun, 02 Jun 2019 21:57:25: 23000000 INFO @ Sun, 02 Jun 2019 21:57:27: 17000000 INFO @ Sun, 02 Jun 2019 21:57:30: 21000000 INFO @ Sun, 02 Jun 2019 21:57:31: 24000000 INFO @ Sun, 02 Jun 2019 21:57:36: 18000000 INFO @ Sun, 02 Jun 2019 21:57:37: 22000000 INFO @ Sun, 02 Jun 2019 21:57:38: 25000000 INFO @ Sun, 02 Jun 2019 21:57:44: 19000000 INFO @ Sun, 02 Jun 2019 21:57:45: 23000000 INFO @ Sun, 02 Jun 2019 21:57:46: 26000000 INFO @ Sun, 02 Jun 2019 21:57:52: 24000000 INFO @ Sun, 02 Jun 2019 21:57:53: 27000000 INFO @ Sun, 02 Jun 2019 21:57:53: 20000000 INFO @ Sun, 02 Jun 2019 21:57:59: 28000000 INFO @ Sun, 02 Jun 2019 21:57:59: 25000000 INFO @ Sun, 02 Jun 2019 21:58:01: 21000000 INFO @ Sun, 02 Jun 2019 21:58:06: 29000000 INFO @ Sun, 02 Jun 2019 21:58:06: 26000000 INFO @ Sun, 02 Jun 2019 21:58:09: 22000000 INFO @ Sun, 02 Jun 2019 21:58:13: 30000000 INFO @ Sun, 02 Jun 2019 21:58:14: 27000000 INFO @ Sun, 02 Jun 2019 21:58:18: 23000000 INFO @ Sun, 02 Jun 2019 21:58:19: 31000000 INFO @ Sun, 02 Jun 2019 21:58:21: 28000000 INFO @ Sun, 02 Jun 2019 21:58:27: 32000000 INFO @ Sun, 02 Jun 2019 21:58:28: 24000000 INFO @ Sun, 02 Jun 2019 21:58:28: 29000000 INFO @ Sun, 02 Jun 2019 21:58:35: 30000000 INFO @ Sun, 02 Jun 2019 21:58:37: 33000000 INFO @ Sun, 02 Jun 2019 21:58:38: 25000000 INFO @ Sun, 02 Jun 2019 21:58:42: 31000000 INFO @ Sun, 02 Jun 2019 21:58:47: 34000000 INFO @ Sun, 02 Jun 2019 21:58:47: 26000000 INFO @ Sun, 02 Jun 2019 21:58:50: 32000000 INFO @ Sun, 02 Jun 2019 21:58:57: 33000000 INFO @ Sun, 02 Jun 2019 21:58:57: 35000000 INFO @ Sun, 02 Jun 2019 21:58:57: 27000000 INFO @ Sun, 02 Jun 2019 21:59:04: 34000000 INFO @ Sun, 02 Jun 2019 21:59:06: 36000000 INFO @ Sun, 02 Jun 2019 21:59:07: 28000000 INFO @ Sun, 02 Jun 2019 21:59:11: 35000000 INFO @ Sun, 02 Jun 2019 21:59:14: 37000000 INFO @ Sun, 02 Jun 2019 21:59:17: 29000000 INFO @ Sun, 02 Jun 2019 21:59:19: 36000000 INFO @ Sun, 02 Jun 2019 21:59:22: 38000000 INFO @ Sun, 02 Jun 2019 21:59:25: 37000000 INFO @ Sun, 02 Jun 2019 21:59:27: 30000000 INFO @ Sun, 02 Jun 2019 21:59:28: 39000000 INFO @ Sun, 02 Jun 2019 21:59:32: 38000000 INFO @ Sun, 02 Jun 2019 21:59:35: 40000000 INFO @ Sun, 02 Jun 2019 21:59:35: 31000000 INFO @ Sun, 02 Jun 2019 21:59:39: 39000000 INFO @ Sun, 02 Jun 2019 21:59:41: 41000000 INFO @ Sun, 02 Jun 2019 21:59:44: 32000000 INFO @ Sun, 02 Jun 2019 21:59:46: 40000000 INFO @ Sun, 02 Jun 2019 21:59:47: 42000000 INFO @ Sun, 02 Jun 2019 21:59:53: 33000000 INFO @ Sun, 02 Jun 2019 21:59:53: 41000000 INFO @ Sun, 02 Jun 2019 21:59:54: 43000000 INFO @ Sun, 02 Jun 2019 22:00:00: 42000000 INFO @ Sun, 02 Jun 2019 22:00:00: 44000000 INFO @ Sun, 02 Jun 2019 22:00:01: 34000000 INFO @ Sun, 02 Jun 2019 22:00:07: 43000000 INFO @ Sun, 02 Jun 2019 22:00:07: 45000000 INFO @ Sun, 02 Jun 2019 22:00:09: 35000000 INFO @ Sun, 02 Jun 2019 22:00:13: 46000000 INFO @ Sun, 02 Jun 2019 22:00:14: 44000000 INFO @ Sun, 02 Jun 2019 22:00:18: 36000000 INFO @ Sun, 02 Jun 2019 22:00:20: 47000000 INFO @ Sun, 02 Jun 2019 22:00:21: 45000000 INFO @ Sun, 02 Jun 2019 22:00:27: 48000000 INFO @ Sun, 02 Jun 2019 22:00:28: 37000000 INFO @ Sun, 02 Jun 2019 22:00:28: 46000000 INFO @ Sun, 02 Jun 2019 22:00:33: 49000000 INFO @ Sun, 02 Jun 2019 22:00:35: 47000000 INFO @ Sun, 02 Jun 2019 22:00:35: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 22:00:35: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 22:00:35: #1 total tags in treatment: 23858499 INFO @ Sun, 02 Jun 2019 22:00:35: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 22:00:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 22:00:36: #1 tags after filtering in treatment: 21281295 INFO @ Sun, 02 Jun 2019 22:00:36: #1 Redundant rate of treatment: 0.11 INFO @ Sun, 02 Jun 2019 22:00:36: #1 finished! INFO @ Sun, 02 Jun 2019 22:00:36: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 22:00:36: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 22:00:37: 38000000 INFO @ Sun, 02 Jun 2019 22:00:37: #2 number of paired peaks: 235 WARNING @ Sun, 02 Jun 2019 22:00:37: Fewer paired peaks (235) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 235 pairs to build model! INFO @ Sun, 02 Jun 2019 22:00:37: start model_add_line... INFO @ Sun, 02 Jun 2019 22:00:38: start X-correlation... INFO @ Sun, 02 Jun 2019 22:00:38: end of X-cor INFO @ Sun, 02 Jun 2019 22:00:38: #2 finished! INFO @ Sun, 02 Jun 2019 22:00:38: #2 predicted fragment length is 66 bps INFO @ Sun, 02 Jun 2019 22:00:38: #2 alternative fragment length(s) may be 3,66,92,123 bps INFO @ Sun, 02 Jun 2019 22:00:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.20_model.r WARNING @ Sun, 02 Jun 2019 22:00:38: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 22:00:38: #2 You may need to consider one of the other alternative d(s): 3,66,92,123 WARNING @ Sun, 02 Jun 2019 22:00:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 22:00:38: #3 Call peaks... INFO @ Sun, 02 Jun 2019 22:00:38: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 22:00:42: 48000000 INFO @ Sun, 02 Jun 2019 22:00:45: 39000000 INFO @ Sun, 02 Jun 2019 22:00:49: 49000000 INFO @ Sun, 02 Jun 2019 22:00:52: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 22:00:52: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 22:00:52: #1 total tags in treatment: 23858499 INFO @ Sun, 02 Jun 2019 22:00:52: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 22:00:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 22:00:52: #1 tags after filtering in treatment: 21281295 INFO @ Sun, 02 Jun 2019 22:00:52: #1 Redundant rate of treatment: 0.11 INFO @ Sun, 02 Jun 2019 22:00:52: #1 finished! INFO @ Sun, 02 Jun 2019 22:00:52: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 22:00:52: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 22:00:54: #2 number of paired peaks: 235 WARNING @ Sun, 02 Jun 2019 22:00:54: Fewer paired peaks (235) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 235 pairs to build model! INFO @ Sun, 02 Jun 2019 22:00:54: start model_add_line... INFO @ Sun, 02 Jun 2019 22:00:54: start X-correlation... INFO @ Sun, 02 Jun 2019 22:00:54: end of X-cor INFO @ Sun, 02 Jun 2019 22:00:54: #2 finished! INFO @ Sun, 02 Jun 2019 22:00:54: #2 predicted fragment length is 66 bps INFO @ Sun, 02 Jun 2019 22:00:54: #2 alternative fragment length(s) may be 3,66,92,123 bps INFO @ Sun, 02 Jun 2019 22:00:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.05_model.r WARNING @ Sun, 02 Jun 2019 22:00:54: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 22:00:54: #2 You may need to consider one of the other alternative d(s): 3,66,92,123 WARNING @ Sun, 02 Jun 2019 22:00:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 22:00:54: #3 Call peaks... INFO @ Sun, 02 Jun 2019 22:00:54: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 22:00:55: 40000000 INFO @ Sun, 02 Jun 2019 22:01:03: 41000000 INFO @ Sun, 02 Jun 2019 22:01:11: 42000000 INFO @ Sun, 02 Jun 2019 22:01:19: 43000000 INFO @ Sun, 02 Jun 2019 22:01:25: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 22:01:28: 44000000 INFO @ Sun, 02 Jun 2019 22:01:37: 45000000 INFO @ Sun, 02 Jun 2019 22:01:42: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 22:01:45: 46000000 INFO @ Sun, 02 Jun 2019 22:01:47: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.20_peaks.xls INFO @ Sun, 02 Jun 2019 22:01:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.20_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 22:01:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.20_summits.bed INFO @ Sun, 02 Jun 2019 22:01:47: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (192 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 22:01:54: 47000000 INFO @ Sun, 02 Jun 2019 22:02:02: 48000000 INFO @ Sun, 02 Jun 2019 22:02:04: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.05_peaks.xls INFO @ Sun, 02 Jun 2019 22:02:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.05_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 22:02:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.05_summits.bed INFO @ Sun, 02 Jun 2019 22:02:04: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (598 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 22:02:10: 49000000 INFO @ Sun, 02 Jun 2019 22:02:12: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 22:02:12: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 22:02:12: #1 total tags in treatment: 23858499 INFO @ Sun, 02 Jun 2019 22:02:12: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 22:02:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 22:02:13: #1 tags after filtering in treatment: 21281295 INFO @ Sun, 02 Jun 2019 22:02:13: #1 Redundant rate of treatment: 0.11 INFO @ Sun, 02 Jun 2019 22:02:13: #1 finished! INFO @ Sun, 02 Jun 2019 22:02:13: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 22:02:13: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 22:02:14: #2 number of paired peaks: 235 WARNING @ Sun, 02 Jun 2019 22:02:14: Fewer paired peaks (235) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 235 pairs to build model! INFO @ Sun, 02 Jun 2019 22:02:14: start model_add_line... INFO @ Sun, 02 Jun 2019 22:02:15: start X-correlation... INFO @ Sun, 02 Jun 2019 22:02:15: end of X-cor INFO @ Sun, 02 Jun 2019 22:02:15: #2 finished! INFO @ Sun, 02 Jun 2019 22:02:15: #2 predicted fragment length is 66 bps INFO @ Sun, 02 Jun 2019 22:02:15: #2 alternative fragment length(s) may be 3,66,92,123 bps INFO @ Sun, 02 Jun 2019 22:02:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.10_model.r WARNING @ Sun, 02 Jun 2019 22:02:15: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 22:02:15: #2 You may need to consider one of the other alternative d(s): 3,66,92,123 WARNING @ Sun, 02 Jun 2019 22:02:15: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 22:02:15: #3 Call peaks... INFO @ Sun, 02 Jun 2019 22:02:15: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 22:03:02: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 22:03:24: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.10_peaks.xls INFO @ Sun, 02 Jun 2019 22:03:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.10_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 22:03:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4996813/SRX4996813.10_summits.bed INFO @ Sun, 02 Jun 2019 22:03:24: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (429 records, 4 fields): 4 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。