Job ID = 1292443 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2019-06-02T09:35:54 fasterq-dump.2.9.6 sys: connection not found while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download-internal.ncbi.nlm.nih.gov:443' 2019-06-02T09:35:54 fasterq-dump.2.9.6 err: connection not found while validating within network system module - error with https open 'https://sra-download-internal.ncbi.nlm.nih.gov/traces/sra67/SRR/007376/SRR7553951' 2019-06-02T09:35:54 fasterq-dump.2.9.6 err: cmn_iter.c cmn_iter_open_db().VDBManagerOpenDBRead( 'SRR7553951' ) -> RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcNotFound) 2019-06-02T09:35:54 fasterq-dump.2.9.6 err: make_fastq_iter() -> RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcNotFound) spots read : 5,753,564 reads read : 11,507,128 reads written : 11,507,128 spots read : 9,984,422 reads read : 19,968,844 reads written : 19,968,844 2019-06-02T10:01:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T10:01:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T10:01:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 24,970,904 reads read : 49,941,808 reads written : 49,941,808 rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:42:50 40708890 reads; of these: 40708890 (100.00%) were paired; of these: 2990888 (7.35%) aligned concordantly 0 times 31783532 (78.08%) aligned concordantly exactly 1 time 5934470 (14.58%) aligned concordantly >1 times ---- 2990888 pairs aligned concordantly 0 times; of these: 634355 (21.21%) aligned discordantly 1 time ---- 2356533 pairs aligned 0 times concordantly or discordantly; of these: 4713066 mates make up the pairs; of these: 3672017 (77.91%) aligned 0 times 695634 (14.76%) aligned exactly 1 time 345415 (7.33%) aligned >1 times 95.49% overall alignment rate Time searching: 00:42:50 Overall time: 00:42:50 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2999801 / 38143492 = 0.0786 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 02 Jun 2019 20:25:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 20:25:24: #1 read tag files... INFO @ Sun, 02 Jun 2019 20:25:24: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 20:25:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 20:25:24: #1 read tag files... INFO @ Sun, 02 Jun 2019 20:25:24: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 20:25:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 20:25:24: #1 read tag files... INFO @ Sun, 02 Jun 2019 20:25:24: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 20:25:33: 1000000 INFO @ Sun, 02 Jun 2019 20:25:33: 1000000 INFO @ Sun, 02 Jun 2019 20:25:33: 1000000 INFO @ Sun, 02 Jun 2019 20:25:41: 2000000 INFO @ Sun, 02 Jun 2019 20:25:42: 2000000 INFO @ Sun, 02 Jun 2019 20:25:42: 2000000 INFO @ Sun, 02 Jun 2019 20:25:49: 3000000 INFO @ Sun, 02 Jun 2019 20:25:51: 3000000 INFO @ Sun, 02 Jun 2019 20:25:51: 3000000 INFO @ Sun, 02 Jun 2019 20:25:57: 4000000 INFO @ Sun, 02 Jun 2019 20:26:00: 4000000 INFO @ Sun, 02 Jun 2019 20:26:00: 4000000 INFO @ Sun, 02 Jun 2019 20:26:05: 5000000 INFO @ Sun, 02 Jun 2019 20:26:09: 5000000 INFO @ Sun, 02 Jun 2019 20:26:09: 5000000 INFO @ Sun, 02 Jun 2019 20:26:13: 6000000 INFO @ Sun, 02 Jun 2019 20:26:18: 6000000 INFO @ Sun, 02 Jun 2019 20:26:18: 6000000 INFO @ Sun, 02 Jun 2019 20:26:21: 7000000 INFO @ Sun, 02 Jun 2019 20:26:26: 7000000 INFO @ Sun, 02 Jun 2019 20:26:27: 7000000 INFO @ Sun, 02 Jun 2019 20:26:30: 8000000 INFO @ Sun, 02 Jun 2019 20:26:34: 8000000 INFO @ Sun, 02 Jun 2019 20:26:36: 8000000 INFO @ Sun, 02 Jun 2019 20:26:39: 9000000 INFO @ Sun, 02 Jun 2019 20:26:42: 9000000 INFO @ Sun, 02 Jun 2019 20:26:45: 9000000 INFO @ Sun, 02 Jun 2019 20:26:49: 10000000 INFO @ Sun, 02 Jun 2019 20:26:50: 10000000 INFO @ Sun, 02 Jun 2019 20:26:54: 10000000 INFO @ Sun, 02 Jun 2019 20:26:58: 11000000 INFO @ Sun, 02 Jun 2019 20:26:58: 11000000 INFO @ Sun, 02 Jun 2019 20:27:03: 11000000 INFO @ Sun, 02 Jun 2019 20:27:07: 12000000 INFO @ Sun, 02 Jun 2019 20:27:07: 12000000 INFO @ Sun, 02 Jun 2019 20:27:12: 12000000 INFO @ Sun, 02 Jun 2019 20:27:15: 13000000 INFO @ Sun, 02 Jun 2019 20:27:16: 13000000 INFO @ Sun, 02 Jun 2019 20:27:21: 13000000 INFO @ Sun, 02 Jun 2019 20:27:23: 14000000 INFO @ Sun, 02 Jun 2019 20:27:25: 14000000 INFO @ Sun, 02 Jun 2019 20:27:30: 14000000 INFO @ Sun, 02 Jun 2019 20:27:31: 15000000 INFO @ Sun, 02 Jun 2019 20:27:34: 15000000 INFO @ Sun, 02 Jun 2019 20:27:39: 15000000 INFO @ Sun, 02 Jun 2019 20:27:39: 16000000 INFO @ Sun, 02 Jun 2019 20:27:43: 16000000 INFO @ Sun, 02 Jun 2019 20:27:48: 17000000 INFO @ Sun, 02 Jun 2019 20:27:48: 16000000 INFO @ Sun, 02 Jun 2019 20:27:52: 17000000 INFO @ Sun, 02 Jun 2019 20:27:56: 18000000 INFO @ Sun, 02 Jun 2019 20:27:57: 17000000 INFO @ Sun, 02 Jun 2019 20:28:01: 18000000 INFO @ Sun, 02 Jun 2019 20:28:04: 19000000 INFO @ Sun, 02 Jun 2019 20:28:06: 18000000 INFO @ Sun, 02 Jun 2019 20:28:10: 19000000 INFO @ Sun, 02 Jun 2019 20:28:12: 20000000 INFO @ Sun, 02 Jun 2019 20:28:15: 19000000 INFO @ Sun, 02 Jun 2019 20:28:19: 20000000 INFO @ Sun, 02 Jun 2019 20:28:20: 21000000 INFO @ Sun, 02 Jun 2019 20:28:24: 20000000 INFO @ Sun, 02 Jun 2019 20:28:28: 21000000 INFO @ Sun, 02 Jun 2019 20:28:28: 22000000 INFO @ Sun, 02 Jun 2019 20:28:33: 21000000 INFO @ Sun, 02 Jun 2019 20:28:36: 23000000 INFO @ Sun, 02 Jun 2019 20:28:37: 22000000 INFO @ Sun, 02 Jun 2019 20:28:42: 22000000 INFO @ Sun, 02 Jun 2019 20:28:44: 24000000 INFO @ Sun, 02 Jun 2019 20:28:46: 23000000 INFO @ Sun, 02 Jun 2019 20:28:51: 23000000 INFO @ Sun, 02 Jun 2019 20:28:52: 25000000 INFO @ Sun, 02 Jun 2019 20:28:54: 24000000 INFO @ Sun, 02 Jun 2019 20:28:59: 24000000 INFO @ Sun, 02 Jun 2019 20:29:00: 26000000 INFO @ Sun, 02 Jun 2019 20:29:03: 25000000 INFO @ Sun, 02 Jun 2019 20:29:08: 27000000 INFO @ Sun, 02 Jun 2019 20:29:08: 25000000 INFO @ Sun, 02 Jun 2019 20:29:12: 26000000 INFO @ Sun, 02 Jun 2019 20:29:16: 28000000 INFO @ Sun, 02 Jun 2019 20:29:17: 26000000 INFO @ Sun, 02 Jun 2019 20:29:21: 27000000 INFO @ Sun, 02 Jun 2019 20:29:24: 29000000 INFO @ Sun, 02 Jun 2019 20:29:26: 27000000 INFO @ Sun, 02 Jun 2019 20:29:30: 28000000 INFO @ Sun, 02 Jun 2019 20:29:33: 30000000 INFO @ Sun, 02 Jun 2019 20:29:35: 28000000 INFO @ Sun, 02 Jun 2019 20:29:39: 29000000 INFO @ Sun, 02 Jun 2019 20:29:41: 31000000 INFO @ Sun, 02 Jun 2019 20:29:43: 29000000 INFO @ Sun, 02 Jun 2019 20:29:48: 30000000 INFO @ Sun, 02 Jun 2019 20:29:49: 32000000 INFO @ Sun, 02 Jun 2019 20:29:52: 30000000 INFO @ Sun, 02 Jun 2019 20:29:57: 31000000 INFO @ Sun, 02 Jun 2019 20:29:57: 33000000 INFO @ Sun, 02 Jun 2019 20:30:01: 31000000 INFO @ Sun, 02 Jun 2019 20:30:05: 34000000 INFO @ Sun, 02 Jun 2019 20:30:06: 32000000 INFO @ Sun, 02 Jun 2019 20:30:10: 32000000 INFO @ Sun, 02 Jun 2019 20:30:13: 35000000 INFO @ Sun, 02 Jun 2019 20:30:15: 33000000 INFO @ Sun, 02 Jun 2019 20:30:19: 33000000 INFO @ Sun, 02 Jun 2019 20:30:21: 36000000 INFO @ Sun, 02 Jun 2019 20:30:24: 34000000 INFO @ Sun, 02 Jun 2019 20:30:29: 34000000 INFO @ Sun, 02 Jun 2019 20:30:29: 37000000 INFO @ Sun, 02 Jun 2019 20:30:33: 35000000 INFO @ Sun, 02 Jun 2019 20:30:38: 38000000 INFO @ Sun, 02 Jun 2019 20:30:38: 35000000 INFO @ Sun, 02 Jun 2019 20:30:42: 36000000 INFO @ Sun, 02 Jun 2019 20:30:46: 39000000 INFO @ Sun, 02 Jun 2019 20:30:47: 36000000 INFO @ Sun, 02 Jun 2019 20:30:51: 37000000 INFO @ Sun, 02 Jun 2019 20:30:54: 40000000 INFO @ Sun, 02 Jun 2019 20:30:56: 37000000 INFO @ Sun, 02 Jun 2019 20:31:00: 38000000 INFO @ Sun, 02 Jun 2019 20:31:02: 41000000 INFO @ Sun, 02 Jun 2019 20:31:05: 38000000 INFO @ Sun, 02 Jun 2019 20:31:09: 39000000 INFO @ Sun, 02 Jun 2019 20:31:11: 42000000 INFO @ Sun, 02 Jun 2019 20:31:14: 39000000 INFO @ Sun, 02 Jun 2019 20:31:19: 40000000 INFO @ Sun, 02 Jun 2019 20:31:19: 43000000 INFO @ Sun, 02 Jun 2019 20:31:24: 40000000 INFO @ Sun, 02 Jun 2019 20:31:27: 44000000 INFO @ Sun, 02 Jun 2019 20:31:28: 41000000 INFO @ Sun, 02 Jun 2019 20:31:33: 41000000 INFO @ Sun, 02 Jun 2019 20:31:35: 45000000 INFO @ Sun, 02 Jun 2019 20:31:38: 42000000 INFO @ Sun, 02 Jun 2019 20:31:42: 42000000 INFO @ Sun, 02 Jun 2019 20:31:44: 46000000 INFO @ Sun, 02 Jun 2019 20:31:47: 43000000 INFO @ Sun, 02 Jun 2019 20:31:52: 43000000 INFO @ Sun, 02 Jun 2019 20:31:52: 47000000 INFO @ Sun, 02 Jun 2019 20:31:56: 44000000 INFO @ Sun, 02 Jun 2019 20:32:00: 48000000 INFO @ Sun, 02 Jun 2019 20:32:01: 44000000 INFO @ Sun, 02 Jun 2019 20:32:05: 45000000 INFO @ Sun, 02 Jun 2019 20:32:08: 49000000 INFO @ Sun, 02 Jun 2019 20:32:10: 45000000 INFO @ Sun, 02 Jun 2019 20:32:15: 46000000 INFO @ Sun, 02 Jun 2019 20:32:16: 50000000 INFO @ Sun, 02 Jun 2019 20:32:19: 46000000 INFO @ Sun, 02 Jun 2019 20:32:24: 47000000 INFO @ Sun, 02 Jun 2019 20:32:24: 51000000 INFO @ Sun, 02 Jun 2019 20:32:28: 47000000 INFO @ Sun, 02 Jun 2019 20:32:32: 52000000 INFO @ Sun, 02 Jun 2019 20:32:33: 48000000 INFO @ Sun, 02 Jun 2019 20:32:37: 48000000 INFO @ Sun, 02 Jun 2019 20:32:40: 53000000 INFO @ Sun, 02 Jun 2019 20:32:42: 49000000 INFO @ Sun, 02 Jun 2019 20:32:46: 49000000 INFO @ Sun, 02 Jun 2019 20:32:48: 54000000 INFO @ Sun, 02 Jun 2019 20:32:50: 50000000 INFO @ Sun, 02 Jun 2019 20:32:55: 50000000 INFO @ Sun, 02 Jun 2019 20:32:57: 55000000 INFO @ Sun, 02 Jun 2019 20:32:59: 51000000 INFO @ Sun, 02 Jun 2019 20:33:04: 51000000 INFO @ Sun, 02 Jun 2019 20:33:05: 56000000 INFO @ Sun, 02 Jun 2019 20:33:09: 52000000 INFO @ Sun, 02 Jun 2019 20:33:12: 57000000 INFO @ Sun, 02 Jun 2019 20:33:13: 52000000 INFO @ Sun, 02 Jun 2019 20:33:17: 53000000 INFO @ Sun, 02 Jun 2019 20:33:20: 58000000 INFO @ Sun, 02 Jun 2019 20:33:22: 53000000 INFO @ Sun, 02 Jun 2019 20:33:27: 54000000 INFO @ Sun, 02 Jun 2019 20:33:28: 59000000 INFO @ Sun, 02 Jun 2019 20:33:31: 54000000 INFO @ Sun, 02 Jun 2019 20:33:35: 60000000 INFO @ Sun, 02 Jun 2019 20:33:35: 55000000 INFO @ Sun, 02 Jun 2019 20:33:40: 55000000 INFO @ Sun, 02 Jun 2019 20:33:42: 61000000 INFO @ Sun, 02 Jun 2019 20:33:44: 56000000 INFO @ Sun, 02 Jun 2019 20:33:48: 56000000 INFO @ Sun, 02 Jun 2019 20:33:50: 62000000 INFO @ Sun, 02 Jun 2019 20:33:52: 57000000 INFO @ Sun, 02 Jun 2019 20:33:57: 57000000 INFO @ Sun, 02 Jun 2019 20:33:57: 63000000 INFO @ Sun, 02 Jun 2019 20:34:01: 58000000 INFO @ Sun, 02 Jun 2019 20:34:04: 64000000 INFO @ Sun, 02 Jun 2019 20:34:05: 58000000 INFO @ Sun, 02 Jun 2019 20:34:09: 59000000 INFO @ Sun, 02 Jun 2019 20:34:11: 65000000 INFO @ Sun, 02 Jun 2019 20:34:13: 59000000 INFO @ Sun, 02 Jun 2019 20:34:17: 60000000 INFO @ Sun, 02 Jun 2019 20:34:18: 66000000 INFO @ Sun, 02 Jun 2019 20:34:21: 60000000 INFO @ Sun, 02 Jun 2019 20:34:25: 67000000 INFO @ Sun, 02 Jun 2019 20:34:25: 61000000 INFO @ Sun, 02 Jun 2019 20:34:29: 61000000 INFO @ Sun, 02 Jun 2019 20:34:32: 68000000 INFO @ Sun, 02 Jun 2019 20:34:33: 62000000 INFO @ Sun, 02 Jun 2019 20:34:38: 62000000 INFO @ Sun, 02 Jun 2019 20:34:40: 69000000 INFO @ Sun, 02 Jun 2019 20:34:42: 63000000 INFO @ Sun, 02 Jun 2019 20:34:46: 63000000 INFO @ Sun, 02 Jun 2019 20:34:47: 70000000 INFO @ Sun, 02 Jun 2019 20:34:49: 64000000 INFO @ Sun, 02 Jun 2019 20:34:53: 64000000 INFO @ Sun, 02 Jun 2019 20:34:54: 71000000 INFO @ Sun, 02 Jun 2019 20:34:56: 65000000 INFO @ Sun, 02 Jun 2019 20:35:00: 65000000 INFO @ Sun, 02 Jun 2019 20:35:00: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 20:35:00: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 20:35:00: #1 total tags in treatment: 34729336 INFO @ Sun, 02 Jun 2019 20:35:00: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:35:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:35:01: #1 tags after filtering in treatment: 25625943 INFO @ Sun, 02 Jun 2019 20:35:01: #1 Redundant rate of treatment: 0.26 INFO @ Sun, 02 Jun 2019 20:35:01: #1 finished! INFO @ Sun, 02 Jun 2019 20:35:01: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:35:01: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:35:03: #2 number of paired peaks: 70 WARNING @ Sun, 02 Jun 2019 20:35:03: Too few paired peaks (70) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 02 Jun 2019 20:35:03: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 20:35:04: 66000000 INFO @ Sun, 02 Jun 2019 20:35:08: 66000000 INFO @ Sun, 02 Jun 2019 20:35:12: 67000000 INFO @ Sun, 02 Jun 2019 20:35:15: 67000000 INFO @ Sun, 02 Jun 2019 20:35:19: 68000000 INFO @ Sun, 02 Jun 2019 20:35:23: 68000000 INFO @ Sun, 02 Jun 2019 20:35:27: 69000000 INFO @ Sun, 02 Jun 2019 20:35:31: 69000000 INFO @ Sun, 02 Jun 2019 20:35:35: 70000000 INFO @ Sun, 02 Jun 2019 20:35:39: 70000000 INFO @ Sun, 02 Jun 2019 20:35:44: 71000000 INFO @ Sun, 02 Jun 2019 20:35:47: 71000000 INFO @ Sun, 02 Jun 2019 20:35:50: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 20:35:50: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 20:35:50: #1 total tags in treatment: 34729336 INFO @ Sun, 02 Jun 2019 20:35:50: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:35:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:35:51: #1 tags after filtering in treatment: 25625943 INFO @ Sun, 02 Jun 2019 20:35:51: #1 Redundant rate of treatment: 0.26 INFO @ Sun, 02 Jun 2019 20:35:51: #1 finished! INFO @ Sun, 02 Jun 2019 20:35:51: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:35:51: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:35:53: #2 number of paired peaks: 70 WARNING @ Sun, 02 Jun 2019 20:35:53: Too few paired peaks (70) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 02 Jun 2019 20:35:53: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 20:35:53: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 20:35:53: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 20:35:53: #1 total tags in treatment: 34729336 INFO @ Sun, 02 Jun 2019 20:35:53: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:35:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:35:54: #1 tags after filtering in treatment: 25625943 INFO @ Sun, 02 Jun 2019 20:35:54: #1 Redundant rate of treatment: 0.26 INFO @ Sun, 02 Jun 2019 20:35:54: #1 finished! INFO @ Sun, 02 Jun 2019 20:35:54: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:35:54: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:35:56: #2 number of paired peaks: 70 WARNING @ Sun, 02 Jun 2019 20:35:56: Too few paired peaks (70) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 02 Jun 2019 20:35:56: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX4419822/SRX4419822.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。