Job ID = 12264785 SRX = SRX4082391 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 42323481 spots for SRR7164215/SRR7164215.sra Written 42323481 spots for SRR7164215/SRR7164215.sra Read 40042205 spots for SRR7164216/SRR7164216.sra Written 40042205 spots for SRR7164216/SRR7164216.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265522 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:54:46 82365686 reads; of these: 82365686 (100.00%) were paired; of these: 11344162 (13.77%) aligned concordantly 0 times 64412945 (78.20%) aligned concordantly exactly 1 time 6608579 (8.02%) aligned concordantly >1 times ---- 11344162 pairs aligned concordantly 0 times; of these: 1783144 (15.72%) aligned discordantly 1 time ---- 9561018 pairs aligned 0 times concordantly or discordantly; of these: 19122036 mates make up the pairs; of these: 11277801 (58.98%) aligned 0 times 6563106 (34.32%) aligned exactly 1 time 1281129 (6.70%) aligned >1 times 93.15% overall alignment rate Time searching: 00:54:46 Overall time: 00:54:46 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 38872085 / 72739586 = 0.5344 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:31:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:31:26: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:31:26: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:31:31: 1000000 INFO @ Sat, 03 Apr 2021 07:31:36: 2000000 INFO @ Sat, 03 Apr 2021 07:31:41: 3000000 INFO @ Sat, 03 Apr 2021 07:31:46: 4000000 INFO @ Sat, 03 Apr 2021 07:31:51: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:31:56: 6000000 INFO @ Sat, 03 Apr 2021 07:31:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:31:56: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:31:56: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:32:01: 7000000 INFO @ Sat, 03 Apr 2021 07:32:02: 1000000 INFO @ Sat, 03 Apr 2021 07:32:05: 8000000 INFO @ Sat, 03 Apr 2021 07:32:07: 2000000 INFO @ Sat, 03 Apr 2021 07:32:11: 9000000 INFO @ Sat, 03 Apr 2021 07:32:13: 3000000 INFO @ Sat, 03 Apr 2021 07:32:16: 10000000 INFO @ Sat, 03 Apr 2021 07:32:18: 4000000 INFO @ Sat, 03 Apr 2021 07:32:21: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:32:24: 5000000 INFO @ Sat, 03 Apr 2021 07:32:26: 12000000 INFO @ Sat, 03 Apr 2021 07:32:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:32:26: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:32:26: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:32:30: 6000000 INFO @ Sat, 03 Apr 2021 07:32:31: 13000000 INFO @ Sat, 03 Apr 2021 07:32:31: 1000000 INFO @ Sat, 03 Apr 2021 07:32:35: 7000000 INFO @ Sat, 03 Apr 2021 07:32:36: 14000000 INFO @ Sat, 03 Apr 2021 07:32:37: 2000000 INFO @ Sat, 03 Apr 2021 07:32:41: 8000000 INFO @ Sat, 03 Apr 2021 07:32:42: 15000000 INFO @ Sat, 03 Apr 2021 07:32:42: 3000000 INFO @ Sat, 03 Apr 2021 07:32:47: 9000000 INFO @ Sat, 03 Apr 2021 07:32:47: 16000000 INFO @ Sat, 03 Apr 2021 07:32:47: 4000000 INFO @ Sat, 03 Apr 2021 07:32:52: 17000000 INFO @ Sat, 03 Apr 2021 07:32:52: 5000000 INFO @ Sat, 03 Apr 2021 07:32:52: 10000000 INFO @ Sat, 03 Apr 2021 07:32:57: 18000000 INFO @ Sat, 03 Apr 2021 07:32:57: 6000000 INFO @ Sat, 03 Apr 2021 07:32:58: 11000000 INFO @ Sat, 03 Apr 2021 07:33:02: 19000000 INFO @ Sat, 03 Apr 2021 07:33:03: 7000000 INFO @ Sat, 03 Apr 2021 07:33:03: 12000000 INFO @ Sat, 03 Apr 2021 07:33:08: 20000000 INFO @ Sat, 03 Apr 2021 07:33:08: 8000000 INFO @ Sat, 03 Apr 2021 07:33:09: 13000000 INFO @ Sat, 03 Apr 2021 07:33:13: 21000000 INFO @ Sat, 03 Apr 2021 07:33:14: 9000000 INFO @ Sat, 03 Apr 2021 07:33:14: 14000000 INFO @ Sat, 03 Apr 2021 07:33:18: 22000000 INFO @ Sat, 03 Apr 2021 07:33:19: 10000000 INFO @ Sat, 03 Apr 2021 07:33:20: 15000000 INFO @ Sat, 03 Apr 2021 07:33:24: 11000000 INFO @ Sat, 03 Apr 2021 07:33:26: 23000000 INFO @ Sat, 03 Apr 2021 07:33:26: 16000000 INFO @ Sat, 03 Apr 2021 07:33:29: 12000000 INFO @ Sat, 03 Apr 2021 07:33:31: 24000000 INFO @ Sat, 03 Apr 2021 07:33:31: 17000000 INFO @ Sat, 03 Apr 2021 07:33:35: 13000000 INFO @ Sat, 03 Apr 2021 07:33:36: 25000000 INFO @ Sat, 03 Apr 2021 07:33:37: 18000000 INFO @ Sat, 03 Apr 2021 07:33:40: 14000000 INFO @ Sat, 03 Apr 2021 07:33:41: 26000000 INFO @ Sat, 03 Apr 2021 07:33:43: 19000000 INFO @ Sat, 03 Apr 2021 07:33:45: 15000000 INFO @ Sat, 03 Apr 2021 07:33:47: 27000000 INFO @ Sat, 03 Apr 2021 07:33:49: 20000000 INFO @ Sat, 03 Apr 2021 07:33:50: 16000000 INFO @ Sat, 03 Apr 2021 07:33:52: 28000000 INFO @ Sat, 03 Apr 2021 07:33:54: 21000000 INFO @ Sat, 03 Apr 2021 07:33:56: 17000000 INFO @ Sat, 03 Apr 2021 07:33:57: 29000000 INFO @ Sat, 03 Apr 2021 07:34:00: 22000000 INFO @ Sat, 03 Apr 2021 07:34:01: 18000000 INFO @ Sat, 03 Apr 2021 07:34:03: 30000000 INFO @ Sat, 03 Apr 2021 07:34:06: 23000000 INFO @ Sat, 03 Apr 2021 07:34:06: 19000000 INFO @ Sat, 03 Apr 2021 07:34:08: 31000000 INFO @ Sat, 03 Apr 2021 07:34:11: 24000000 INFO @ Sat, 03 Apr 2021 07:34:11: 20000000 INFO @ Sat, 03 Apr 2021 07:34:13: 32000000 INFO @ Sat, 03 Apr 2021 07:34:17: 21000000 INFO @ Sat, 03 Apr 2021 07:34:17: 25000000 INFO @ Sat, 03 Apr 2021 07:34:19: 33000000 INFO @ Sat, 03 Apr 2021 07:34:22: 22000000 INFO @ Sat, 03 Apr 2021 07:34:23: 26000000 INFO @ Sat, 03 Apr 2021 07:34:24: 34000000 INFO @ Sat, 03 Apr 2021 07:34:27: 23000000 INFO @ Sat, 03 Apr 2021 07:34:28: 27000000 INFO @ Sat, 03 Apr 2021 07:34:30: 35000000 INFO @ Sat, 03 Apr 2021 07:34:33: 24000000 INFO @ Sat, 03 Apr 2021 07:34:34: 28000000 INFO @ Sat, 03 Apr 2021 07:34:35: 36000000 INFO @ Sat, 03 Apr 2021 07:34:38: 25000000 INFO @ Sat, 03 Apr 2021 07:34:40: 29000000 INFO @ Sat, 03 Apr 2021 07:34:40: 37000000 INFO @ Sat, 03 Apr 2021 07:34:43: 26000000 INFO @ Sat, 03 Apr 2021 07:34:45: 30000000 INFO @ Sat, 03 Apr 2021 07:34:46: 38000000 INFO @ Sat, 03 Apr 2021 07:34:49: 27000000 INFO @ Sat, 03 Apr 2021 07:34:51: 31000000 INFO @ Sat, 03 Apr 2021 07:34:51: 39000000 INFO @ Sat, 03 Apr 2021 07:34:54: 28000000 INFO @ Sat, 03 Apr 2021 07:34:56: 40000000 INFO @ Sat, 03 Apr 2021 07:34:57: 32000000 INFO @ Sat, 03 Apr 2021 07:34:59: 29000000 INFO @ Sat, 03 Apr 2021 07:35:01: 41000000 INFO @ Sat, 03 Apr 2021 07:35:03: 33000000 INFO @ Sat, 03 Apr 2021 07:35:05: 30000000 INFO @ Sat, 03 Apr 2021 07:35:07: 42000000 INFO @ Sat, 03 Apr 2021 07:35:09: 34000000 INFO @ Sat, 03 Apr 2021 07:35:10: 31000000 INFO @ Sat, 03 Apr 2021 07:35:12: 43000000 INFO @ Sat, 03 Apr 2021 07:35:15: 35000000 INFO @ Sat, 03 Apr 2021 07:35:16: 32000000 INFO @ Sat, 03 Apr 2021 07:35:18: 44000000 INFO @ Sat, 03 Apr 2021 07:35:21: 33000000 INFO @ Sat, 03 Apr 2021 07:35:21: 36000000 INFO @ Sat, 03 Apr 2021 07:35:23: 45000000 INFO @ Sat, 03 Apr 2021 07:35:27: 34000000 INFO @ Sat, 03 Apr 2021 07:35:27: 37000000 INFO @ Sat, 03 Apr 2021 07:35:29: 46000000 INFO @ Sat, 03 Apr 2021 07:35:32: 35000000 INFO @ Sat, 03 Apr 2021 07:35:33: 38000000 INFO @ Sat, 03 Apr 2021 07:35:33: 47000000 INFO @ Sat, 03 Apr 2021 07:35:37: 36000000 INFO @ Sat, 03 Apr 2021 07:35:38: 48000000 INFO @ Sat, 03 Apr 2021 07:35:39: 39000000 INFO @ Sat, 03 Apr 2021 07:35:41: 37000000 INFO @ Sat, 03 Apr 2021 07:35:43: 49000000 INFO @ Sat, 03 Apr 2021 07:35:45: 40000000 INFO @ Sat, 03 Apr 2021 07:35:46: 38000000 INFO @ Sat, 03 Apr 2021 07:35:48: 50000000 INFO @ Sat, 03 Apr 2021 07:35:51: 41000000 INFO @ Sat, 03 Apr 2021 07:35:51: 39000000 INFO @ Sat, 03 Apr 2021 07:35:53: 51000000 INFO @ Sat, 03 Apr 2021 07:35:56: 40000000 INFO @ Sat, 03 Apr 2021 07:35:56: 42000000 INFO @ Sat, 03 Apr 2021 07:35:58: 52000000 INFO @ Sat, 03 Apr 2021 07:36:01: 41000000 INFO @ Sat, 03 Apr 2021 07:36:02: 43000000 INFO @ Sat, 03 Apr 2021 07:36:02: 53000000 INFO @ Sat, 03 Apr 2021 07:36:06: 42000000 INFO @ Sat, 03 Apr 2021 07:36:07: 44000000 INFO @ Sat, 03 Apr 2021 07:36:07: 54000000 INFO @ Sat, 03 Apr 2021 07:36:11: 43000000 INFO @ Sat, 03 Apr 2021 07:36:12: 55000000 INFO @ Sat, 03 Apr 2021 07:36:12: 45000000 INFO @ Sat, 03 Apr 2021 07:36:16: 44000000 INFO @ Sat, 03 Apr 2021 07:36:17: 56000000 INFO @ Sat, 03 Apr 2021 07:36:18: 46000000 INFO @ Sat, 03 Apr 2021 07:36:21: 45000000 INFO @ Sat, 03 Apr 2021 07:36:22: 57000000 INFO @ Sat, 03 Apr 2021 07:36:23: 47000000 INFO @ Sat, 03 Apr 2021 07:36:26: 46000000 INFO @ Sat, 03 Apr 2021 07:36:27: 58000000 INFO @ Sat, 03 Apr 2021 07:36:27: 48000000 INFO @ Sat, 03 Apr 2021 07:36:31: 47000000 INFO @ Sat, 03 Apr 2021 07:36:32: 59000000 INFO @ Sat, 03 Apr 2021 07:36:32: 49000000 INFO @ Sat, 03 Apr 2021 07:36:36: 48000000 INFO @ Sat, 03 Apr 2021 07:36:36: 60000000 INFO @ Sat, 03 Apr 2021 07:36:37: 50000000 INFO @ Sat, 03 Apr 2021 07:36:40: 49000000 INFO @ Sat, 03 Apr 2021 07:36:41: 61000000 INFO @ Sat, 03 Apr 2021 07:36:42: 51000000 INFO @ Sat, 03 Apr 2021 07:36:45: 50000000 INFO @ Sat, 03 Apr 2021 07:36:46: 62000000 INFO @ Sat, 03 Apr 2021 07:36:47: 52000000 INFO @ Sat, 03 Apr 2021 07:36:50: 51000000 INFO @ Sat, 03 Apr 2021 07:36:50: 63000000 INFO @ Sat, 03 Apr 2021 07:36:51: 53000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:36:54: 52000000 INFO @ Sat, 03 Apr 2021 07:36:55: 64000000 INFO @ Sat, 03 Apr 2021 07:36:56: 54000000 INFO @ Sat, 03 Apr 2021 07:36:59: 53000000 INFO @ Sat, 03 Apr 2021 07:37:00: 65000000 INFO @ Sat, 03 Apr 2021 07:37:01: 55000000 INFO @ Sat, 03 Apr 2021 07:37:04: 54000000 INFO @ Sat, 03 Apr 2021 07:37:05: 56000000 INFO @ Sat, 03 Apr 2021 07:37:05: 66000000 INFO @ Sat, 03 Apr 2021 07:37:09: 55000000 INFO @ Sat, 03 Apr 2021 07:37:09: 57000000 INFO @ Sat, 03 Apr 2021 07:37:10: 67000000 INFO @ Sat, 03 Apr 2021 07:37:14: 56000000 INFO @ Sat, 03 Apr 2021 07:37:14: 68000000 INFO @ Sat, 03 Apr 2021 07:37:15: 58000000 INFO @ Sat, 03 Apr 2021 07:37:19: 57000000 INFO @ Sat, 03 Apr 2021 07:37:19: 59000000 INFO @ Sat, 03 Apr 2021 07:37:19: 69000000 INFO @ Sat, 03 Apr 2021 07:37:23: 60000000 INFO @ Sat, 03 Apr 2021 07:37:24: 58000000 INFO @ Sat, 03 Apr 2021 07:37:24: 70000000 INFO @ Sat, 03 Apr 2021 07:37:28: 61000000 INFO @ Sat, 03 Apr 2021 07:37:28: 71000000 INFO @ Sat, 03 Apr 2021 07:37:28: 59000000 INFO @ Sat, 03 Apr 2021 07:37:32: 62000000 INFO @ Sat, 03 Apr 2021 07:37:33: 72000000 INFO @ Sat, 03 Apr 2021 07:37:34: 60000000 INFO @ Sat, 03 Apr 2021 07:37:37: 63000000 INFO @ Sat, 03 Apr 2021 07:37:37: 73000000 INFO @ Sat, 03 Apr 2021 07:37:38: 61000000 INFO @ Sat, 03 Apr 2021 07:37:41: 64000000 INFO @ Sat, 03 Apr 2021 07:37:42: 74000000 INFO @ Sat, 03 Apr 2021 07:37:43: 62000000 INFO @ Sat, 03 Apr 2021 07:37:45: 65000000 INFO @ Sat, 03 Apr 2021 07:37:46: 75000000 INFO @ Sat, 03 Apr 2021 07:37:48: 63000000 INFO @ Sat, 03 Apr 2021 07:37:49: 66000000 INFO @ Sat, 03 Apr 2021 07:37:49: #1 tag size is determined as 33 bps INFO @ Sat, 03 Apr 2021 07:37:49: #1 tag size = 33 INFO @ Sat, 03 Apr 2021 07:37:49: #1 total tags in treatment: 32344157 INFO @ Sat, 03 Apr 2021 07:37:49: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:37:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:37:50: #1 tags after filtering in treatment: 18023118 INFO @ Sat, 03 Apr 2021 07:37:50: #1 Redundant rate of treatment: 0.44 INFO @ Sat, 03 Apr 2021 07:37:50: #1 finished! INFO @ Sat, 03 Apr 2021 07:37:50: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:37:50: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:37:51: #2 number of paired peaks: 253 WARNING @ Sat, 03 Apr 2021 07:37:51: Fewer paired peaks (253) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 253 pairs to build model! INFO @ Sat, 03 Apr 2021 07:37:51: start model_add_line... INFO @ Sat, 03 Apr 2021 07:37:52: start X-correlation... INFO @ Sat, 03 Apr 2021 07:37:52: end of X-cor INFO @ Sat, 03 Apr 2021 07:37:52: #2 finished! INFO @ Sat, 03 Apr 2021 07:37:52: #2 predicted fragment length is 101 bps INFO @ Sat, 03 Apr 2021 07:37:52: #2 alternative fragment length(s) may be 101 bps INFO @ Sat, 03 Apr 2021 07:37:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.05_model.r INFO @ Sat, 03 Apr 2021 07:37:52: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:37:52: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:37:52: 64000000 INFO @ Sat, 03 Apr 2021 07:37:54: 67000000 INFO @ Sat, 03 Apr 2021 07:37:57: 65000000 INFO @ Sat, 03 Apr 2021 07:37:58: 68000000 INFO @ Sat, 03 Apr 2021 07:38:02: 66000000 INFO @ Sat, 03 Apr 2021 07:38:02: 69000000 INFO @ Sat, 03 Apr 2021 07:38:06: 67000000 INFO @ Sat, 03 Apr 2021 07:38:06: 70000000 INFO @ Sat, 03 Apr 2021 07:38:10: 68000000 INFO @ Sat, 03 Apr 2021 07:38:11: 71000000 INFO @ Sat, 03 Apr 2021 07:38:15: 69000000 INFO @ Sat, 03 Apr 2021 07:38:15: 72000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:38:20: 73000000 INFO @ Sat, 03 Apr 2021 07:38:20: 70000000 INFO @ Sat, 03 Apr 2021 07:38:23: 74000000 INFO @ Sat, 03 Apr 2021 07:38:24: 71000000 INFO @ Sat, 03 Apr 2021 07:38:25: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:38:28: 75000000 INFO @ Sat, 03 Apr 2021 07:38:28: 72000000 INFO @ Sat, 03 Apr 2021 07:38:32: #1 tag size is determined as 33 bps INFO @ Sat, 03 Apr 2021 07:38:32: #1 tag size = 33 INFO @ Sat, 03 Apr 2021 07:38:32: #1 total tags in treatment: 32344157 INFO @ Sat, 03 Apr 2021 07:38:32: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:38:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:38:32: #1 tags after filtering in treatment: 18023118 INFO @ Sat, 03 Apr 2021 07:38:32: #1 Redundant rate of treatment: 0.44 INFO @ Sat, 03 Apr 2021 07:38:32: #1 finished! INFO @ Sat, 03 Apr 2021 07:38:32: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:38:32: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:38:33: 73000000 INFO @ Sat, 03 Apr 2021 07:38:34: #2 number of paired peaks: 253 WARNING @ Sat, 03 Apr 2021 07:38:34: Fewer paired peaks (253) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 253 pairs to build model! INFO @ Sat, 03 Apr 2021 07:38:34: start model_add_line... INFO @ Sat, 03 Apr 2021 07:38:34: start X-correlation... INFO @ Sat, 03 Apr 2021 07:38:34: end of X-cor INFO @ Sat, 03 Apr 2021 07:38:34: #2 finished! INFO @ Sat, 03 Apr 2021 07:38:34: #2 predicted fragment length is 101 bps INFO @ Sat, 03 Apr 2021 07:38:34: #2 alternative fragment length(s) may be 101 bps INFO @ Sat, 03 Apr 2021 07:38:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.10_model.r INFO @ Sat, 03 Apr 2021 07:38:34: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:38:34: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:38:38: 74000000 INFO @ Sat, 03 Apr 2021 07:38:42: 75000000 INFO @ Sat, 03 Apr 2021 07:38:42: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:38:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:38:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.05_summits.bed INFO @ Sat, 03 Apr 2021 07:38:42: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (12283 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:38:46: #1 tag size is determined as 33 bps INFO @ Sat, 03 Apr 2021 07:38:46: #1 tag size = 33 INFO @ Sat, 03 Apr 2021 07:38:46: #1 total tags in treatment: 32344157 INFO @ Sat, 03 Apr 2021 07:38:46: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:38:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:38:46: #1 tags after filtering in treatment: 18023118 INFO @ Sat, 03 Apr 2021 07:38:46: #1 Redundant rate of treatment: 0.44 INFO @ Sat, 03 Apr 2021 07:38:46: #1 finished! INFO @ Sat, 03 Apr 2021 07:38:46: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:38:46: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:38:48: #2 number of paired peaks: 253 WARNING @ Sat, 03 Apr 2021 07:38:48: Fewer paired peaks (253) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 253 pairs to build model! INFO @ Sat, 03 Apr 2021 07:38:48: start model_add_line... INFO @ Sat, 03 Apr 2021 07:38:48: start X-correlation... INFO @ Sat, 03 Apr 2021 07:38:48: end of X-cor INFO @ Sat, 03 Apr 2021 07:38:48: #2 finished! INFO @ Sat, 03 Apr 2021 07:38:48: #2 predicted fragment length is 101 bps INFO @ Sat, 03 Apr 2021 07:38:48: #2 alternative fragment length(s) may be 101 bps INFO @ Sat, 03 Apr 2021 07:38:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.20_model.r INFO @ Sat, 03 Apr 2021 07:38:48: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:38:48: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:39:07: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:39:21: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:39:23: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:39:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:39:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.10_summits.bed INFO @ Sat, 03 Apr 2021 07:39:23: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (7279 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:39:37: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:39:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:39:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082391/SRX4082391.20_summits.bed INFO @ Sat, 03 Apr 2021 07:39:37: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3296 records, 4 fields): 6 millis CompletedMACS2peakCalling