Job ID = 12264783 SRX = SRX4082389 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 21242486 spots for SRR7164210/SRR7164210.sra Written 21242486 spots for SRR7164210/SRR7164210.sra Read 9867679 spots for SRR7164211/SRR7164211.sra Written 9867679 spots for SRR7164211/SRR7164211.sra Read 34080434 spots for SRR7164212/SRR7164212.sra Written 34080434 spots for SRR7164212/SRR7164212.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265550 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:04:00 65190599 reads; of these: 65190599 (100.00%) were paired; of these: 5618432 (8.62%) aligned concordantly 0 times 53156385 (81.54%) aligned concordantly exactly 1 time 6415782 (9.84%) aligned concordantly >1 times ---- 5618432 pairs aligned concordantly 0 times; of these: 1189268 (21.17%) aligned discordantly 1 time ---- 4429164 pairs aligned 0 times concordantly or discordantly; of these: 8858328 mates make up the pairs; of these: 6299967 (71.12%) aligned 0 times 1954971 (22.07%) aligned exactly 1 time 603390 (6.81%) aligned >1 times 95.17% overall alignment rate Time searching: 01:04:00 Overall time: 01:04:00 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 52 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 28487126 / 58714584 = 0.4852 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:43:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:43:15: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:43:15: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:43:25: 1000000 INFO @ Sat, 03 Apr 2021 07:43:35: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:43:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:43:42: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:43:42: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:43:46: 3000000 INFO @ Sat, 03 Apr 2021 07:43:53: 1000000 INFO @ Sat, 03 Apr 2021 07:43:58: 4000000 INFO @ Sat, 03 Apr 2021 07:44:04: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:44:10: 5000000 INFO @ Sat, 03 Apr 2021 07:44:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:44:12: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:44:12: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:44:15: 3000000 INFO @ Sat, 03 Apr 2021 07:44:23: 1000000 INFO @ Sat, 03 Apr 2021 07:44:25: 6000000 INFO @ Sat, 03 Apr 2021 07:44:27: 4000000 INFO @ Sat, 03 Apr 2021 07:44:35: 2000000 INFO @ Sat, 03 Apr 2021 07:44:38: 5000000 INFO @ Sat, 03 Apr 2021 07:44:40: 7000000 INFO @ Sat, 03 Apr 2021 07:44:46: 3000000 INFO @ Sat, 03 Apr 2021 07:44:48: 6000000 INFO @ Sat, 03 Apr 2021 07:44:54: 8000000 INFO @ Sat, 03 Apr 2021 07:44:56: 4000000 INFO @ Sat, 03 Apr 2021 07:45:01: 7000000 INFO @ Sat, 03 Apr 2021 07:45:07: 9000000 INFO @ Sat, 03 Apr 2021 07:45:07: 5000000 INFO @ Sat, 03 Apr 2021 07:45:12: 8000000 INFO @ Sat, 03 Apr 2021 07:45:18: 6000000 INFO @ Sat, 03 Apr 2021 07:45:20: 10000000 INFO @ Sat, 03 Apr 2021 07:45:25: 9000000 INFO @ Sat, 03 Apr 2021 07:45:29: 7000000 INFO @ Sat, 03 Apr 2021 07:45:31: 11000000 INFO @ Sat, 03 Apr 2021 07:45:36: 10000000 INFO @ Sat, 03 Apr 2021 07:45:40: 8000000 INFO @ Sat, 03 Apr 2021 07:45:43: 12000000 INFO @ Sat, 03 Apr 2021 07:45:48: 11000000 INFO @ Sat, 03 Apr 2021 07:45:51: 9000000 INFO @ Sat, 03 Apr 2021 07:45:54: 13000000 INFO @ Sat, 03 Apr 2021 07:45:59: 12000000 INFO @ Sat, 03 Apr 2021 07:46:01: 10000000 INFO @ Sat, 03 Apr 2021 07:46:05: 14000000 INFO @ Sat, 03 Apr 2021 07:46:11: 11000000 INFO @ Sat, 03 Apr 2021 07:46:13: 13000000 INFO @ Sat, 03 Apr 2021 07:46:16: 15000000 INFO @ Sat, 03 Apr 2021 07:46:21: 12000000 INFO @ Sat, 03 Apr 2021 07:46:26: 14000000 INFO @ Sat, 03 Apr 2021 07:46:27: 16000000 INFO @ Sat, 03 Apr 2021 07:46:31: 13000000 INFO @ Sat, 03 Apr 2021 07:46:37: 15000000 INFO @ Sat, 03 Apr 2021 07:46:37: 17000000 INFO @ Sat, 03 Apr 2021 07:46:42: 14000000 INFO @ Sat, 03 Apr 2021 07:46:48: 16000000 INFO @ Sat, 03 Apr 2021 07:46:49: 18000000 INFO @ Sat, 03 Apr 2021 07:46:53: 15000000 INFO @ Sat, 03 Apr 2021 07:46:58: 17000000 INFO @ Sat, 03 Apr 2021 07:47:00: 19000000 INFO @ Sat, 03 Apr 2021 07:47:03: 16000000 INFO @ Sat, 03 Apr 2021 07:47:11: 18000000 INFO @ Sat, 03 Apr 2021 07:47:11: 20000000 INFO @ Sat, 03 Apr 2021 07:47:13: 17000000 INFO @ Sat, 03 Apr 2021 07:47:22: 19000000 INFO @ Sat, 03 Apr 2021 07:47:23: 21000000 INFO @ Sat, 03 Apr 2021 07:47:24: 18000000 INFO @ Sat, 03 Apr 2021 07:47:33: 20000000 INFO @ Sat, 03 Apr 2021 07:47:34: 22000000 INFO @ Sat, 03 Apr 2021 07:47:36: 19000000 INFO @ Sat, 03 Apr 2021 07:47:45: 23000000 INFO @ Sat, 03 Apr 2021 07:47:45: 21000000 INFO @ Sat, 03 Apr 2021 07:47:47: 20000000 INFO @ Sat, 03 Apr 2021 07:47:56: 22000000 INFO @ Sat, 03 Apr 2021 07:47:56: 24000000 INFO @ Sat, 03 Apr 2021 07:47:57: 21000000 INFO @ Sat, 03 Apr 2021 07:48:06: 23000000 INFO @ Sat, 03 Apr 2021 07:48:07: 25000000 INFO @ Sat, 03 Apr 2021 07:48:08: 22000000 INFO @ Sat, 03 Apr 2021 07:48:17: 24000000 INFO @ Sat, 03 Apr 2021 07:48:18: 26000000 INFO @ Sat, 03 Apr 2021 07:48:18: 23000000 INFO @ Sat, 03 Apr 2021 07:48:27: 25000000 INFO @ Sat, 03 Apr 2021 07:48:29: 27000000 INFO @ Sat, 03 Apr 2021 07:48:30: 24000000 INFO @ Sat, 03 Apr 2021 07:48:37: 26000000 INFO @ Sat, 03 Apr 2021 07:48:39: 28000000 INFO @ Sat, 03 Apr 2021 07:48:42: 25000000 INFO @ Sat, 03 Apr 2021 07:48:48: 27000000 INFO @ Sat, 03 Apr 2021 07:48:49: 29000000 INFO @ Sat, 03 Apr 2021 07:48:52: 26000000 INFO @ Sat, 03 Apr 2021 07:48:59: 28000000 INFO @ Sat, 03 Apr 2021 07:49:01: 30000000 INFO @ Sat, 03 Apr 2021 07:49:03: 27000000 INFO @ Sat, 03 Apr 2021 07:49:10: 29000000 INFO @ Sat, 03 Apr 2021 07:49:12: 31000000 INFO @ Sat, 03 Apr 2021 07:49:13: 28000000 INFO @ Sat, 03 Apr 2021 07:49:20: 30000000 INFO @ Sat, 03 Apr 2021 07:49:25: 32000000 INFO @ Sat, 03 Apr 2021 07:49:26: 29000000 INFO @ Sat, 03 Apr 2021 07:49:30: 31000000 INFO @ Sat, 03 Apr 2021 07:49:38: 33000000 INFO @ Sat, 03 Apr 2021 07:49:38: 30000000 INFO @ Sat, 03 Apr 2021 07:49:39: 32000000 INFO @ Sat, 03 Apr 2021 07:49:49: 33000000 INFO @ Sat, 03 Apr 2021 07:49:50: 31000000 INFO @ Sat, 03 Apr 2021 07:49:50: 34000000 INFO @ Sat, 03 Apr 2021 07:49:58: 34000000 INFO @ Sat, 03 Apr 2021 07:50:02: 35000000 INFO @ Sat, 03 Apr 2021 07:50:04: 32000000 INFO @ Sat, 03 Apr 2021 07:50:09: 35000000 INFO @ Sat, 03 Apr 2021 07:50:14: 36000000 INFO @ Sat, 03 Apr 2021 07:50:16: 33000000 INFO @ Sat, 03 Apr 2021 07:50:18: 36000000 INFO @ Sat, 03 Apr 2021 07:50:26: 37000000 INFO @ Sat, 03 Apr 2021 07:50:28: 34000000 INFO @ Sat, 03 Apr 2021 07:50:29: 37000000 INFO @ Sat, 03 Apr 2021 07:50:38: 38000000 INFO @ Sat, 03 Apr 2021 07:50:39: 38000000 INFO @ Sat, 03 Apr 2021 07:50:39: 35000000 INFO @ Sat, 03 Apr 2021 07:50:49: 39000000 INFO @ Sat, 03 Apr 2021 07:50:50: 39000000 INFO @ Sat, 03 Apr 2021 07:50:52: 36000000 INFO @ Sat, 03 Apr 2021 07:51:00: 40000000 INFO @ Sat, 03 Apr 2021 07:51:02: 40000000 INFO @ Sat, 03 Apr 2021 07:51:03: 37000000 INFO @ Sat, 03 Apr 2021 07:51:11: 41000000 INFO @ Sat, 03 Apr 2021 07:51:14: 38000000 INFO @ Sat, 03 Apr 2021 07:51:15: 41000000 INFO @ Sat, 03 Apr 2021 07:51:22: 42000000 INFO @ Sat, 03 Apr 2021 07:51:26: 39000000 INFO @ Sat, 03 Apr 2021 07:51:27: 42000000 INFO @ Sat, 03 Apr 2021 07:51:32: 43000000 INFO @ Sat, 03 Apr 2021 07:51:38: 40000000 INFO @ Sat, 03 Apr 2021 07:51:39: 43000000 INFO @ Sat, 03 Apr 2021 07:51:44: 44000000 INFO @ Sat, 03 Apr 2021 07:51:51: 44000000 INFO @ Sat, 03 Apr 2021 07:51:51: 41000000 INFO @ Sat, 03 Apr 2021 07:51:56: 45000000 INFO @ Sat, 03 Apr 2021 07:52:01: 45000000 INFO @ Sat, 03 Apr 2021 07:52:05: 46000000 INFO @ Sat, 03 Apr 2021 07:52:05: 42000000 INFO @ Sat, 03 Apr 2021 07:52:13: 46000000 INFO @ Sat, 03 Apr 2021 07:52:16: 47000000 INFO @ Sat, 03 Apr 2021 07:52:18: 43000000 INFO @ Sat, 03 Apr 2021 07:52:25: 47000000 INFO @ Sat, 03 Apr 2021 07:52:25: 48000000 INFO @ Sat, 03 Apr 2021 07:52:30: 44000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:52:36: 49000000 INFO @ Sat, 03 Apr 2021 07:52:39: 48000000 INFO @ Sat, 03 Apr 2021 07:52:42: 45000000 INFO @ Sat, 03 Apr 2021 07:52:45: 50000000 INFO @ Sat, 03 Apr 2021 07:52:50: 49000000 INFO @ Sat, 03 Apr 2021 07:52:53: 46000000 INFO @ Sat, 03 Apr 2021 07:52:55: 51000000 INFO @ Sat, 03 Apr 2021 07:53:02: 50000000 INFO @ Sat, 03 Apr 2021 07:53:04: 52000000 INFO @ Sat, 03 Apr 2021 07:53:05: 47000000 INFO @ Sat, 03 Apr 2021 07:53:13: 53000000 INFO @ Sat, 03 Apr 2021 07:53:16: 51000000 INFO @ Sat, 03 Apr 2021 07:53:16: 48000000 INFO @ Sat, 03 Apr 2021 07:53:23: 54000000 INFO @ Sat, 03 Apr 2021 07:53:27: 52000000 INFO @ Sat, 03 Apr 2021 07:53:28: 49000000 INFO @ Sat, 03 Apr 2021 07:53:32: 55000000 INFO @ Sat, 03 Apr 2021 07:53:38: 53000000 INFO @ Sat, 03 Apr 2021 07:53:40: 50000000 INFO @ Sat, 03 Apr 2021 07:53:41: 56000000 INFO @ Sat, 03 Apr 2021 07:53:49: 54000000 INFO @ Sat, 03 Apr 2021 07:53:50: 57000000 INFO @ Sat, 03 Apr 2021 07:53:51: 51000000 INFO @ Sat, 03 Apr 2021 07:53:59: 58000000 INFO @ Sat, 03 Apr 2021 07:54:00: 55000000 INFO @ Sat, 03 Apr 2021 07:54:04: 52000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:54:10: 59000000 INFO @ Sat, 03 Apr 2021 07:54:13: 56000000 INFO @ Sat, 03 Apr 2021 07:54:16: 53000000 INFO @ Sat, 03 Apr 2021 07:54:19: 60000000 INFO @ Sat, 03 Apr 2021 07:54:24: 57000000 INFO @ Sat, 03 Apr 2021 07:54:28: 54000000 INFO @ Sat, 03 Apr 2021 07:54:28: 61000000 INFO @ Sat, 03 Apr 2021 07:54:36: 58000000 INFO @ Sat, 03 Apr 2021 07:54:38: 62000000 INFO @ Sat, 03 Apr 2021 07:54:39: 55000000 INFO @ Sat, 03 Apr 2021 07:54:47: 63000000 INFO @ Sat, 03 Apr 2021 07:54:48: 59000000 INFO @ Sat, 03 Apr 2021 07:54:50: 56000000 INFO @ Sat, 03 Apr 2021 07:54:56: 64000000 INFO @ Sat, 03 Apr 2021 07:55:00: 60000000 INFO @ Sat, 03 Apr 2021 07:55:01: 57000000 INFO @ Sat, 03 Apr 2021 07:55:06: 65000000 INFO @ Sat, 03 Apr 2021 07:55:11: 58000000 INFO @ Sat, 03 Apr 2021 07:55:12: 61000000 INFO @ Sat, 03 Apr 2021 07:55:15: 66000000 INFO @ Sat, 03 Apr 2021 07:55:22: 59000000 INFO @ Sat, 03 Apr 2021 07:55:23: 62000000 INFO @ Sat, 03 Apr 2021 07:55:24: 67000000 INFO @ Sat, 03 Apr 2021 07:55:26: #1 tag size is determined as 36 bps INFO @ Sat, 03 Apr 2021 07:55:26: #1 tag size = 36 INFO @ Sat, 03 Apr 2021 07:55:26: #1 total tags in treatment: 31227810 INFO @ Sat, 03 Apr 2021 07:55:26: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:55:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:55:26: #1 tags after filtering in treatment: 16448617 INFO @ Sat, 03 Apr 2021 07:55:26: #1 Redundant rate of treatment: 0.47 INFO @ Sat, 03 Apr 2021 07:55:26: #1 finished! INFO @ Sat, 03 Apr 2021 07:55:26: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:55:26: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:55:27: #2 number of paired peaks: 396 WARNING @ Sat, 03 Apr 2021 07:55:27: Fewer paired peaks (396) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 396 pairs to build model! INFO @ Sat, 03 Apr 2021 07:55:27: start model_add_line... INFO @ Sat, 03 Apr 2021 07:55:28: start X-correlation... INFO @ Sat, 03 Apr 2021 07:55:28: end of X-cor INFO @ Sat, 03 Apr 2021 07:55:28: #2 finished! INFO @ Sat, 03 Apr 2021 07:55:28: #2 predicted fragment length is 72 bps INFO @ Sat, 03 Apr 2021 07:55:28: #2 alternative fragment length(s) may be 72 bps INFO @ Sat, 03 Apr 2021 07:55:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.10_model.r WARNING @ Sat, 03 Apr 2021 07:55:28: #2 Since the d (72) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:55:28: #2 You may need to consider one of the other alternative d(s): 72 WARNING @ Sat, 03 Apr 2021 07:55:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:55:28: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:55:28: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:55:33: 60000000 INFO @ Sat, 03 Apr 2021 07:55:33: 63000000 INFO @ Sat, 03 Apr 2021 07:55:44: 61000000 INFO @ Sat, 03 Apr 2021 07:55:44: 64000000 INFO @ Sat, 03 Apr 2021 07:55:54: 62000000 INFO @ Sat, 03 Apr 2021 07:55:55: 65000000 INFO @ Sat, 03 Apr 2021 07:56:02: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:56:04: 63000000 INFO @ Sat, 03 Apr 2021 07:56:05: 66000000 INFO @ Sat, 03 Apr 2021 07:56:17: 64000000 INFO @ Sat, 03 Apr 2021 07:56:17: 67000000 INFO @ Sat, 03 Apr 2021 07:56:19: #1 tag size is determined as 36 bps INFO @ Sat, 03 Apr 2021 07:56:19: #1 tag size = 36 INFO @ Sat, 03 Apr 2021 07:56:19: #1 total tags in treatment: 31227810 INFO @ Sat, 03 Apr 2021 07:56:19: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:56:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:56:20: #1 tags after filtering in treatment: 16448617 INFO @ Sat, 03 Apr 2021 07:56:20: #1 Redundant rate of treatment: 0.47 INFO @ Sat, 03 Apr 2021 07:56:20: #1 finished! INFO @ Sat, 03 Apr 2021 07:56:20: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:56:20: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:56:21: #2 number of paired peaks: 396 WARNING @ Sat, 03 Apr 2021 07:56:21: Fewer paired peaks (396) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 396 pairs to build model! INFO @ Sat, 03 Apr 2021 07:56:21: start model_add_line... INFO @ Sat, 03 Apr 2021 07:56:22: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:56:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:56:22: start X-correlation... INFO @ Sat, 03 Apr 2021 07:56:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.10_summits.bed INFO @ Sat, 03 Apr 2021 07:56:22: end of X-cor INFO @ Sat, 03 Apr 2021 07:56:22: #2 finished! INFO @ Sat, 03 Apr 2021 07:56:22: #2 predicted fragment length is 72 bps INFO @ Sat, 03 Apr 2021 07:56:22: #2 alternative fragment length(s) may be 72 bps INFO @ Sat, 03 Apr 2021 07:56:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.05_model.r WARNING @ Sat, 03 Apr 2021 07:56:22: #2 Since the d (72) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:56:22: #2 You may need to consider one of the other alternative d(s): 72 WARNING @ Sat, 03 Apr 2021 07:56:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:56:22: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:56:22: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:56:22: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (8054 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:56:27: 65000000 INFO @ Sat, 03 Apr 2021 07:56:36: 66000000 INFO @ Sat, 03 Apr 2021 07:56:47: 67000000 INFO @ Sat, 03 Apr 2021 07:56:48: #1 tag size is determined as 36 bps INFO @ Sat, 03 Apr 2021 07:56:48: #1 tag size = 36 INFO @ Sat, 03 Apr 2021 07:56:48: #1 total tags in treatment: 31227810 INFO @ Sat, 03 Apr 2021 07:56:48: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:56:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:56:49: #1 tags after filtering in treatment: 16448617 INFO @ Sat, 03 Apr 2021 07:56:49: #1 Redundant rate of treatment: 0.47 INFO @ Sat, 03 Apr 2021 07:56:49: #1 finished! INFO @ Sat, 03 Apr 2021 07:56:49: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:56:49: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:56:50: #2 number of paired peaks: 396 WARNING @ Sat, 03 Apr 2021 07:56:50: Fewer paired peaks (396) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 396 pairs to build model! INFO @ Sat, 03 Apr 2021 07:56:50: start model_add_line... INFO @ Sat, 03 Apr 2021 07:56:51: start X-correlation... INFO @ Sat, 03 Apr 2021 07:56:51: end of X-cor INFO @ Sat, 03 Apr 2021 07:56:51: #2 finished! INFO @ Sat, 03 Apr 2021 07:56:51: #2 predicted fragment length is 72 bps INFO @ Sat, 03 Apr 2021 07:56:51: #2 alternative fragment length(s) may be 72 bps INFO @ Sat, 03 Apr 2021 07:56:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.20_model.r WARNING @ Sat, 03 Apr 2021 07:56:51: #2 Since the d (72) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:56:51: #2 You may need to consider one of the other alternative d(s): 72 WARNING @ Sat, 03 Apr 2021 07:56:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:56:51: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:56:51: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:56:57: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:57:16: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:57:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:57:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.05_summits.bed INFO @ Sat, 03 Apr 2021 07:57:16: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (13120 records, 4 fields): 30 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:57:26: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:57:44: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:57:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:57:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082389/SRX4082389.20_summits.bed INFO @ Sat, 03 Apr 2021 07:57:44: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (3524 records, 4 fields): 6 millis CompletedMACS2peakCalling