Job ID = 12264779 SRX = SRX4082385 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 37414145 spots for SRR7164203/SRR7164203.sra Written 37414145 spots for SRR7164203/SRR7164203.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265430 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:37:32 37414145 reads; of these: 37414145 (100.00%) were paired; of these: 3979693 (10.64%) aligned concordantly 0 times 30131540 (80.54%) aligned concordantly exactly 1 time 3302912 (8.83%) aligned concordantly >1 times ---- 3979693 pairs aligned concordantly 0 times; of these: 2487618 (62.51%) aligned discordantly 1 time ---- 1492075 pairs aligned 0 times concordantly or discordantly; of these: 2984150 mates make up the pairs; of these: 1735362 (58.15%) aligned 0 times 687955 (23.05%) aligned exactly 1 time 560833 (18.79%) aligned >1 times 97.68% overall alignment rate Time searching: 00:37:32 Overall time: 00:37:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 9741729 / 32046478 = 0.3040 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:56:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:56:31: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:56:31: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:56:38: 1000000 INFO @ Sat, 03 Apr 2021 06:56:45: 2000000 INFO @ Sat, 03 Apr 2021 06:56:52: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:56:59: 4000000 INFO @ Sat, 03 Apr 2021 06:57:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:57:01: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:57:01: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:57:07: 5000000 INFO @ Sat, 03 Apr 2021 06:57:08: 1000000 INFO @ Sat, 03 Apr 2021 06:57:14: 6000000 INFO @ Sat, 03 Apr 2021 06:57:16: 2000000 INFO @ Sat, 03 Apr 2021 06:57:21: 7000000 INFO @ Sat, 03 Apr 2021 06:57:23: 3000000 INFO @ Sat, 03 Apr 2021 06:57:28: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:57:30: 4000000 INFO @ Sat, 03 Apr 2021 06:57:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:57:31: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:57:31: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:57:35: 9000000 INFO @ Sat, 03 Apr 2021 06:57:37: 5000000 INFO @ Sat, 03 Apr 2021 06:57:38: 1000000 INFO @ Sat, 03 Apr 2021 06:57:43: 10000000 INFO @ Sat, 03 Apr 2021 06:57:45: 2000000 INFO @ Sat, 03 Apr 2021 06:57:45: 6000000 INFO @ Sat, 03 Apr 2021 06:57:50: 11000000 INFO @ Sat, 03 Apr 2021 06:57:51: 3000000 INFO @ Sat, 03 Apr 2021 06:57:52: 7000000 INFO @ Sat, 03 Apr 2021 06:57:58: 12000000 INFO @ Sat, 03 Apr 2021 06:57:59: 4000000 INFO @ Sat, 03 Apr 2021 06:57:59: 8000000 INFO @ Sat, 03 Apr 2021 06:58:05: 13000000 INFO @ Sat, 03 Apr 2021 06:58:07: 5000000 INFO @ Sat, 03 Apr 2021 06:58:07: 9000000 INFO @ Sat, 03 Apr 2021 06:58:13: 14000000 INFO @ Sat, 03 Apr 2021 06:58:14: 6000000 INFO @ Sat, 03 Apr 2021 06:58:15: 10000000 INFO @ Sat, 03 Apr 2021 06:58:20: 15000000 INFO @ Sat, 03 Apr 2021 06:58:22: 7000000 INFO @ Sat, 03 Apr 2021 06:58:22: 11000000 INFO @ Sat, 03 Apr 2021 06:58:28: 16000000 INFO @ Sat, 03 Apr 2021 06:58:30: 8000000 INFO @ Sat, 03 Apr 2021 06:58:30: 12000000 INFO @ Sat, 03 Apr 2021 06:58:36: 17000000 INFO @ Sat, 03 Apr 2021 06:58:37: 9000000 INFO @ Sat, 03 Apr 2021 06:58:38: 13000000 INFO @ Sat, 03 Apr 2021 06:58:44: 18000000 INFO @ Sat, 03 Apr 2021 06:58:45: 10000000 INFO @ Sat, 03 Apr 2021 06:58:46: 14000000 INFO @ Sat, 03 Apr 2021 06:58:52: 19000000 INFO @ Sat, 03 Apr 2021 06:58:53: 11000000 INFO @ Sat, 03 Apr 2021 06:58:53: 15000000 INFO @ Sat, 03 Apr 2021 06:59:00: 20000000 INFO @ Sat, 03 Apr 2021 06:59:01: 12000000 INFO @ Sat, 03 Apr 2021 06:59:01: 16000000 INFO @ Sat, 03 Apr 2021 06:59:07: 21000000 INFO @ Sat, 03 Apr 2021 06:59:09: 13000000 INFO @ Sat, 03 Apr 2021 06:59:09: 17000000 INFO @ Sat, 03 Apr 2021 06:59:15: 22000000 INFO @ Sat, 03 Apr 2021 06:59:16: 14000000 INFO @ Sat, 03 Apr 2021 06:59:17: 18000000 INFO @ Sat, 03 Apr 2021 06:59:23: 23000000 INFO @ Sat, 03 Apr 2021 06:59:24: 15000000 INFO @ Sat, 03 Apr 2021 06:59:25: 19000000 INFO @ Sat, 03 Apr 2021 06:59:31: 24000000 INFO @ Sat, 03 Apr 2021 06:59:33: 16000000 INFO @ Sat, 03 Apr 2021 06:59:33: 20000000 INFO @ Sat, 03 Apr 2021 06:59:39: 25000000 INFO @ Sat, 03 Apr 2021 06:59:41: 21000000 INFO @ Sat, 03 Apr 2021 06:59:41: 17000000 INFO @ Sat, 03 Apr 2021 06:59:47: 26000000 INFO @ Sat, 03 Apr 2021 06:59:49: 22000000 INFO @ Sat, 03 Apr 2021 06:59:49: 18000000 INFO @ Sat, 03 Apr 2021 06:59:55: 27000000 INFO @ Sat, 03 Apr 2021 06:59:57: 23000000 INFO @ Sat, 03 Apr 2021 06:59:57: 19000000 INFO @ Sat, 03 Apr 2021 07:00:04: 28000000 INFO @ Sat, 03 Apr 2021 07:00:05: 24000000 INFO @ Sat, 03 Apr 2021 07:00:05: 20000000 INFO @ Sat, 03 Apr 2021 07:00:12: 29000000 INFO @ Sat, 03 Apr 2021 07:00:13: 21000000 INFO @ Sat, 03 Apr 2021 07:00:13: 25000000 INFO @ Sat, 03 Apr 2021 07:00:20: 30000000 INFO @ Sat, 03 Apr 2021 07:00:21: 22000000 INFO @ Sat, 03 Apr 2021 07:00:21: 26000000 INFO @ Sat, 03 Apr 2021 07:00:28: 31000000 INFO @ Sat, 03 Apr 2021 07:00:29: 23000000 INFO @ Sat, 03 Apr 2021 07:00:29: 27000000 INFO @ Sat, 03 Apr 2021 07:00:36: 32000000 INFO @ Sat, 03 Apr 2021 07:00:37: 28000000 INFO @ Sat, 03 Apr 2021 07:00:37: 24000000 INFO @ Sat, 03 Apr 2021 07:00:44: 33000000 INFO @ Sat, 03 Apr 2021 07:00:44: 29000000 INFO @ Sat, 03 Apr 2021 07:00:45: 25000000 INFO @ Sat, 03 Apr 2021 07:00:52: 34000000 INFO @ Sat, 03 Apr 2021 07:00:52: 30000000 INFO @ Sat, 03 Apr 2021 07:00:52: 26000000 INFO @ Sat, 03 Apr 2021 07:00:59: 35000000 INFO @ Sat, 03 Apr 2021 07:01:00: 31000000 INFO @ Sat, 03 Apr 2021 07:01:00: 27000000 INFO @ Sat, 03 Apr 2021 07:01:07: 36000000 INFO @ Sat, 03 Apr 2021 07:01:08: 32000000 INFO @ Sat, 03 Apr 2021 07:01:08: 28000000 INFO @ Sat, 03 Apr 2021 07:01:15: 37000000 INFO @ Sat, 03 Apr 2021 07:01:15: 33000000 INFO @ Sat, 03 Apr 2021 07:01:15: 29000000 INFO @ Sat, 03 Apr 2021 07:01:22: 38000000 INFO @ Sat, 03 Apr 2021 07:01:22: 34000000 INFO @ Sat, 03 Apr 2021 07:01:22: 30000000 INFO @ Sat, 03 Apr 2021 07:01:30: 35000000 INFO @ Sat, 03 Apr 2021 07:01:30: 31000000 INFO @ Sat, 03 Apr 2021 07:01:30: 39000000 INFO @ Sat, 03 Apr 2021 07:01:37: 32000000 INFO @ Sat, 03 Apr 2021 07:01:37: 36000000 INFO @ Sat, 03 Apr 2021 07:01:37: 40000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:01:44: 33000000 INFO @ Sat, 03 Apr 2021 07:01:45: 37000000 INFO @ Sat, 03 Apr 2021 07:01:45: 41000000 INFO @ Sat, 03 Apr 2021 07:01:51: 34000000 INFO @ Sat, 03 Apr 2021 07:01:52: 38000000 INFO @ Sat, 03 Apr 2021 07:01:52: 42000000 INFO @ Sat, 03 Apr 2021 07:01:58: 35000000 INFO @ Sat, 03 Apr 2021 07:01:59: 39000000 INFO @ Sat, 03 Apr 2021 07:02:00: 43000000 INFO @ Sat, 03 Apr 2021 07:02:06: 36000000 INFO @ Sat, 03 Apr 2021 07:02:07: 44000000 INFO @ Sat, 03 Apr 2021 07:02:07: 40000000 INFO @ Sat, 03 Apr 2021 07:02:13: 37000000 INFO @ Sat, 03 Apr 2021 07:02:14: 45000000 INFO @ Sat, 03 Apr 2021 07:02:15: 41000000 INFO @ Sat, 03 Apr 2021 07:02:21: 38000000 INFO @ Sat, 03 Apr 2021 07:02:22: 46000000 INFO @ Sat, 03 Apr 2021 07:02:22: 42000000 INFO @ Sat, 03 Apr 2021 07:02:28: 47000000 INFO @ Sat, 03 Apr 2021 07:02:28: 39000000 INFO @ Sat, 03 Apr 2021 07:02:29: 43000000 INFO @ Sat, 03 Apr 2021 07:02:34: 48000000 INFO @ Sat, 03 Apr 2021 07:02:36: 40000000 INFO @ Sat, 03 Apr 2021 07:02:37: 44000000 INFO @ Sat, 03 Apr 2021 07:02:40: 49000000 INFO @ Sat, 03 Apr 2021 07:02:42: 41000000 INFO @ Sat, 03 Apr 2021 07:02:44: 45000000 INFO @ Sat, 03 Apr 2021 07:02:46: 50000000 INFO @ Sat, 03 Apr 2021 07:02:48: 42000000 INFO @ Sat, 03 Apr 2021 07:02:51: 46000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:02:52: 51000000 INFO @ Sat, 03 Apr 2021 07:02:55: 43000000 INFO @ Sat, 03 Apr 2021 07:02:58: 52000000 INFO @ Sat, 03 Apr 2021 07:02:58: 47000000 INFO @ Sat, 03 Apr 2021 07:03:01: 44000000 INFO @ Sat, 03 Apr 2021 07:03:04: 53000000 INFO @ Sat, 03 Apr 2021 07:03:06: 48000000 INFO @ Sat, 03 Apr 2021 07:03:07: 45000000 INFO @ Sat, 03 Apr 2021 07:03:07: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:03:07: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:03:07: #1 total tags in treatment: 23852768 INFO @ Sat, 03 Apr 2021 07:03:07: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:03:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:03:08: #1 tags after filtering in treatment: 14171049 INFO @ Sat, 03 Apr 2021 07:03:08: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:03:08: #1 finished! INFO @ Sat, 03 Apr 2021 07:03:08: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:03:08: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:03:09: #2 number of paired peaks: 418 WARNING @ Sat, 03 Apr 2021 07:03:09: Fewer paired peaks (418) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 418 pairs to build model! INFO @ Sat, 03 Apr 2021 07:03:09: start model_add_line... INFO @ Sat, 03 Apr 2021 07:03:09: start X-correlation... INFO @ Sat, 03 Apr 2021 07:03:09: end of X-cor INFO @ Sat, 03 Apr 2021 07:03:09: #2 finished! INFO @ Sat, 03 Apr 2021 07:03:09: #2 predicted fragment length is 79 bps INFO @ Sat, 03 Apr 2021 07:03:09: #2 alternative fragment length(s) may be 79 bps INFO @ Sat, 03 Apr 2021 07:03:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.05_model.r WARNING @ Sat, 03 Apr 2021 07:03:09: #2 Since the d (79) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:03:09: #2 You may need to consider one of the other alternative d(s): 79 WARNING @ Sat, 03 Apr 2021 07:03:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:03:09: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:03:09: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:03:13: 49000000 INFO @ Sat, 03 Apr 2021 07:03:13: 46000000 INFO @ Sat, 03 Apr 2021 07:03:19: 47000000 INFO @ Sat, 03 Apr 2021 07:03:20: 50000000 INFO @ Sat, 03 Apr 2021 07:03:25: 48000000 INFO @ Sat, 03 Apr 2021 07:03:27: 51000000 INFO @ Sat, 03 Apr 2021 07:03:32: 49000000 INFO @ Sat, 03 Apr 2021 07:03:33: 52000000 INFO @ Sat, 03 Apr 2021 07:03:36: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:03:38: 50000000 INFO @ Sat, 03 Apr 2021 07:03:40: 53000000 INFO @ Sat, 03 Apr 2021 07:03:43: 51000000 INFO @ Sat, 03 Apr 2021 07:03:44: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:03:44: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:03:44: #1 total tags in treatment: 23852768 INFO @ Sat, 03 Apr 2021 07:03:44: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:03:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:03:45: #1 tags after filtering in treatment: 14171049 INFO @ Sat, 03 Apr 2021 07:03:45: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:03:45: #1 finished! INFO @ Sat, 03 Apr 2021 07:03:45: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:03:45: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:03:46: #2 number of paired peaks: 418 WARNING @ Sat, 03 Apr 2021 07:03:46: Fewer paired peaks (418) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 418 pairs to build model! INFO @ Sat, 03 Apr 2021 07:03:46: start model_add_line... INFO @ Sat, 03 Apr 2021 07:03:46: start X-correlation... INFO @ Sat, 03 Apr 2021 07:03:46: end of X-cor INFO @ Sat, 03 Apr 2021 07:03:46: #2 finished! INFO @ Sat, 03 Apr 2021 07:03:46: #2 predicted fragment length is 79 bps INFO @ Sat, 03 Apr 2021 07:03:46: #2 alternative fragment length(s) may be 79 bps INFO @ Sat, 03 Apr 2021 07:03:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.10_model.r WARNING @ Sat, 03 Apr 2021 07:03:46: #2 Since the d (79) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:03:46: #2 You may need to consider one of the other alternative d(s): 79 WARNING @ Sat, 03 Apr 2021 07:03:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:03:46: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:03:46: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:03:49: 52000000 INFO @ Sat, 03 Apr 2021 07:03:51: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:03:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:03:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.05_summits.bed INFO @ Sat, 03 Apr 2021 07:03:51: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (9757 records, 4 fields): 23 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:03:54: 53000000 INFO @ Sat, 03 Apr 2021 07:03:58: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:03:58: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:03:58: #1 total tags in treatment: 23852768 INFO @ Sat, 03 Apr 2021 07:03:58: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:03:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:03:58: #1 tags after filtering in treatment: 14171049 INFO @ Sat, 03 Apr 2021 07:03:58: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:03:58: #1 finished! INFO @ Sat, 03 Apr 2021 07:03:58: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:03:58: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:03:59: #2 number of paired peaks: 418 WARNING @ Sat, 03 Apr 2021 07:03:59: Fewer paired peaks (418) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 418 pairs to build model! INFO @ Sat, 03 Apr 2021 07:03:59: start model_add_line... INFO @ Sat, 03 Apr 2021 07:03:59: start X-correlation... INFO @ Sat, 03 Apr 2021 07:03:59: end of X-cor INFO @ Sat, 03 Apr 2021 07:03:59: #2 finished! INFO @ Sat, 03 Apr 2021 07:03:59: #2 predicted fragment length is 79 bps INFO @ Sat, 03 Apr 2021 07:03:59: #2 alternative fragment length(s) may be 79 bps INFO @ Sat, 03 Apr 2021 07:03:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.20_model.r WARNING @ Sat, 03 Apr 2021 07:03:59: #2 Since the d (79) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:03:59: #2 You may need to consider one of the other alternative d(s): 79 WARNING @ Sat, 03 Apr 2021 07:03:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:03:59: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:03:59: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:04:13: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:04:26: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:04:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:04:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:04:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.10_summits.bed INFO @ Sat, 03 Apr 2021 07:04:28: Done! pass1 - making usageList (7 chroms): 15 millis pass2 - checking and writing primary data (5968 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:04:40: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:04:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:04:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082385/SRX4082385.20_summits.bed INFO @ Sat, 03 Apr 2021 07:04:40: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (2753 records, 4 fields): 8 millis CompletedMACS2peakCalling