Job ID = 11171113 sra ファイルのダウンロード中... Completed: 955639K bytes transferred in 14 seconds (524983K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 33116848 spots for /home/okishinya/chipatlas/results/ce10/SRX3583353/SRR6494009.sra Written 33116848 spots for /home/okishinya/chipatlas/results/ce10/SRX3583353/SRR6494009.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:13:54 33116848 reads; of these: 33116848 (100.00%) were unpaired; of these: 679657 (2.05%) aligned 0 times 27017855 (81.58%) aligned exactly 1 time 5419336 (16.36%) aligned >1 times 97.95% overall alignment rate Time searching: 00:13:55 Overall time: 00:13:55 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 16 files... [bam_rmdupse_core] 4672108 / 32437191 = 0.1440 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 12:16:40: # Command line: callpeak -t SRX3583353.bam -f BAM -g ce -n SRX3583353.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3583353.10 # format = BAM # ChIP-seq file = ['SRX3583353.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:16:40: # Command line: callpeak -t SRX3583353.bam -f BAM -g ce -n SRX3583353.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3583353.20 # format = BAM # ChIP-seq file = ['SRX3583353.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:16:40: # Command line: callpeak -t SRX3583353.bam -f BAM -g ce -n SRX3583353.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3583353.05 # format = BAM # ChIP-seq file = ['SRX3583353.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:16:40: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:16:40: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:16:40: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:16:40: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:16:40: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:16:40: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:16:47: 1000000 INFO @ Sat, 08 Sep 2018 12:16:48: 1000000 INFO @ Sat, 08 Sep 2018 12:16:48: 1000000 INFO @ Sat, 08 Sep 2018 12:16:55: 2000000 INFO @ Sat, 08 Sep 2018 12:16:57: 2000000 INFO @ Sat, 08 Sep 2018 12:16:57: 2000000 INFO @ Sat, 08 Sep 2018 12:17:03: 3000000 INFO @ Sat, 08 Sep 2018 12:17:06: 3000000 INFO @ Sat, 08 Sep 2018 12:17:06: 3000000 INFO @ Sat, 08 Sep 2018 12:17:10: 4000000 INFO @ Sat, 08 Sep 2018 12:17:15: 4000000 INFO @ Sat, 08 Sep 2018 12:17:15: 4000000 INFO @ Sat, 08 Sep 2018 12:17:18: 5000000 INFO @ Sat, 08 Sep 2018 12:17:23: 5000000 INFO @ Sat, 08 Sep 2018 12:17:23: 5000000 INFO @ Sat, 08 Sep 2018 12:17:25: 6000000 INFO @ Sat, 08 Sep 2018 12:17:32: 6000000 INFO @ Sat, 08 Sep 2018 12:17:32: 6000000 INFO @ Sat, 08 Sep 2018 12:17:33: 7000000 INFO @ Sat, 08 Sep 2018 12:17:40: 8000000 INFO @ Sat, 08 Sep 2018 12:17:41: 7000000 INFO @ Sat, 08 Sep 2018 12:17:41: 7000000 INFO @ Sat, 08 Sep 2018 12:17:48: 9000000 INFO @ Sat, 08 Sep 2018 12:17:49: 8000000 INFO @ Sat, 08 Sep 2018 12:17:49: 8000000 INFO @ Sat, 08 Sep 2018 12:17:55: 10000000 INFO @ Sat, 08 Sep 2018 12:17:58: 9000000 INFO @ Sat, 08 Sep 2018 12:17:58: 9000000 INFO @ Sat, 08 Sep 2018 12:18:03: 11000000 INFO @ Sat, 08 Sep 2018 12:18:07: 10000000 INFO @ Sat, 08 Sep 2018 12:18:07: 10000000 INFO @ Sat, 08 Sep 2018 12:18:10: 12000000 INFO @ Sat, 08 Sep 2018 12:18:16: 11000000 INFO @ Sat, 08 Sep 2018 12:18:16: 11000000 INFO @ Sat, 08 Sep 2018 12:18:18: 13000000 INFO @ Sat, 08 Sep 2018 12:18:24: 12000000 INFO @ Sat, 08 Sep 2018 12:18:24: 12000000 INFO @ Sat, 08 Sep 2018 12:18:26: 14000000 INFO @ Sat, 08 Sep 2018 12:18:33: 13000000 INFO @ Sat, 08 Sep 2018 12:18:33: 13000000 INFO @ Sat, 08 Sep 2018 12:18:34: 15000000 INFO @ Sat, 08 Sep 2018 12:18:41: 14000000 INFO @ Sat, 08 Sep 2018 12:18:41: 14000000 INFO @ Sat, 08 Sep 2018 12:18:42: 16000000 INFO @ Sat, 08 Sep 2018 12:18:49: 15000000 INFO @ Sat, 08 Sep 2018 12:18:49: 15000000 INFO @ Sat, 08 Sep 2018 12:18:50: 17000000 INFO @ Sat, 08 Sep 2018 12:18:57: 16000000 INFO @ Sat, 08 Sep 2018 12:18:57: 16000000 INFO @ Sat, 08 Sep 2018 12:18:58: 18000000 INFO @ Sat, 08 Sep 2018 12:19:06: 17000000 INFO @ Sat, 08 Sep 2018 12:19:06: 17000000 INFO @ Sat, 08 Sep 2018 12:19:06: 19000000 INFO @ Sat, 08 Sep 2018 12:19:14: 20000000 INFO @ Sat, 08 Sep 2018 12:19:14: 18000000 INFO @ Sat, 08 Sep 2018 12:19:14: 18000000 INFO @ Sat, 08 Sep 2018 12:19:22: 21000000 INFO @ Sat, 08 Sep 2018 12:19:22: 19000000 INFO @ Sat, 08 Sep 2018 12:19:22: 19000000 INFO @ Sat, 08 Sep 2018 12:19:30: 22000000 INFO @ Sat, 08 Sep 2018 12:19:30: 20000000 INFO @ Sat, 08 Sep 2018 12:19:30: 20000000 INFO @ Sat, 08 Sep 2018 12:19:38: 23000000 INFO @ Sat, 08 Sep 2018 12:19:38: 21000000 INFO @ Sat, 08 Sep 2018 12:19:38: 21000000 INFO @ Sat, 08 Sep 2018 12:19:46: 24000000 INFO @ Sat, 08 Sep 2018 12:19:47: 22000000 INFO @ Sat, 08 Sep 2018 12:19:47: 22000000 INFO @ Sat, 08 Sep 2018 12:19:54: 25000000 INFO @ Sat, 08 Sep 2018 12:19:55: 23000000 INFO @ Sat, 08 Sep 2018 12:19:55: 23000000 INFO @ Sat, 08 Sep 2018 12:20:02: 26000000 INFO @ Sat, 08 Sep 2018 12:20:03: 24000000 INFO @ Sat, 08 Sep 2018 12:20:03: 24000000 INFO @ Sat, 08 Sep 2018 12:20:10: 27000000 INFO @ Sat, 08 Sep 2018 12:20:11: 25000000 INFO @ Sat, 08 Sep 2018 12:20:11: 25000000 INFO @ Sat, 08 Sep 2018 12:20:16: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:20:16: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:20:16: #1 total tags in treatment: 27765083 INFO @ Sat, 08 Sep 2018 12:20:16: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:20:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:20:17: #1 tags after filtering in treatment: 27765083 INFO @ Sat, 08 Sep 2018 12:20:17: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:20:17: #1 finished! INFO @ Sat, 08 Sep 2018 12:20:17: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:20:17: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:20:18: #2 number of paired peaks: 77 WARNING @ Sat, 08 Sep 2018 12:20:18: Too few paired peaks (77) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:20:18: Process for pairing-model is terminated! cat: SRX3583353.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3583353.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3583353.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3583353.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 12:20:19: 26000000 INFO @ Sat, 08 Sep 2018 12:20:19: 26000000 INFO @ Sat, 08 Sep 2018 12:20:27: 27000000 INFO @ Sat, 08 Sep 2018 12:20:27: 27000000 INFO @ Sat, 08 Sep 2018 12:20:34: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:20:34: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:20:34: #1 total tags in treatment: 27765083 INFO @ Sat, 08 Sep 2018 12:20:34: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:20:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:20:34: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:20:34: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:20:34: #1 total tags in treatment: 27765083 INFO @ Sat, 08 Sep 2018 12:20:34: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:20:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:20:34: #1 tags after filtering in treatment: 27765083 INFO @ Sat, 08 Sep 2018 12:20:34: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:20:34: #1 finished! INFO @ Sat, 08 Sep 2018 12:20:34: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:20:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:20:34: #1 tags after filtering in treatment: 27765083 INFO @ Sat, 08 Sep 2018 12:20:34: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:20:34: #1 finished! INFO @ Sat, 08 Sep 2018 12:20:34: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:20:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:20:36: #2 number of paired peaks: 77 WARNING @ Sat, 08 Sep 2018 12:20:36: Too few paired peaks (77) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:20:36: Process for pairing-model is terminated! INFO @ Sat, 08 Sep 2018 12:20:36: #2 number of paired peaks: 77 WARNING @ Sat, 08 Sep 2018 12:20:36: Too few paired peaks (77) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:20:36: Process for pairing-model is terminated! cat: SRX3583353.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX3583353.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) pass1 - making usageList (0 chroms): 1 millis rm: cannot remove `SRX3583353.10_model.r': そのようなファイルやディレクトリはありません needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3583353.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3583353.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling rm: cannot remove `SRX3583353.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3583353.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3583353.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。