Job ID = 10714370 sra ファイルのダウンロード中... Completed: 1200143K bytes transferred in 120 seconds (81254K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 73178255 spots for /home/okishinya/chipatlas/results/ce10/SRX2985929/SRR5807079.sra Written 73178255 spots for /home/okishinya/chipatlas/results/ce10/SRX2985929/SRR5807079.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:19:57 73178255 reads; of these: 73178255 (100.00%) were unpaired; of these: 1292673 (1.77%) aligned 0 times 55283832 (75.55%) aligned exactly 1 time 16601750 (22.69%) aligned >1 times 98.23% overall alignment rate Time searching: 00:19:57 Overall time: 00:19:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 22832284 / 71885582 = 0.3176 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 03 Jun 2018 13:07:23: # Command line: callpeak -t SRX2985929.bam -f BAM -g ce -n SRX2985929.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2985929.05 # format = BAM # ChIP-seq file = ['SRX2985929.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 13:07:23: #1 read tag files... INFO @ Sun, 03 Jun 2018 13:07:23: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 13:07:23: # Command line: callpeak -t SRX2985929.bam -f BAM -g ce -n SRX2985929.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2985929.20 # format = BAM # ChIP-seq file = ['SRX2985929.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 13:07:23: #1 read tag files... INFO @ Sun, 03 Jun 2018 13:07:23: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 13:07:23: # Command line: callpeak -t SRX2985929.bam -f BAM -g ce -n SRX2985929.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2985929.10 # format = BAM # ChIP-seq file = ['SRX2985929.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 13:07:23: #1 read tag files... INFO @ Sun, 03 Jun 2018 13:07:23: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 13:07:31: 1000000 INFO @ Sun, 03 Jun 2018 13:07:31: 1000000 INFO @ Sun, 03 Jun 2018 13:07:31: 1000000 INFO @ Sun, 03 Jun 2018 13:07:39: 2000000 INFO @ Sun, 03 Jun 2018 13:07:39: 2000000 INFO @ Sun, 03 Jun 2018 13:07:39: 2000000 INFO @ Sun, 03 Jun 2018 13:07:46: 3000000 INFO @ Sun, 03 Jun 2018 13:07:46: 3000000 INFO @ Sun, 03 Jun 2018 13:07:46: 3000000 INFO @ Sun, 03 Jun 2018 13:07:54: 4000000 INFO @ Sun, 03 Jun 2018 13:07:54: 4000000 INFO @ Sun, 03 Jun 2018 13:07:54: 4000000 INFO @ Sun, 03 Jun 2018 13:08:01: 5000000 INFO @ Sun, 03 Jun 2018 13:08:01: 5000000 INFO @ Sun, 03 Jun 2018 13:08:01: 5000000 INFO @ Sun, 03 Jun 2018 13:08:09: 6000000 INFO @ Sun, 03 Jun 2018 13:08:09: 6000000 INFO @ Sun, 03 Jun 2018 13:08:09: 6000000 INFO @ Sun, 03 Jun 2018 13:08:16: 7000000 INFO @ Sun, 03 Jun 2018 13:08:16: 7000000 INFO @ Sun, 03 Jun 2018 13:08:16: 7000000 INFO @ Sun, 03 Jun 2018 13:08:24: 8000000 INFO @ Sun, 03 Jun 2018 13:08:24: 8000000 INFO @ Sun, 03 Jun 2018 13:08:24: 8000000 INFO @ Sun, 03 Jun 2018 13:08:31: 9000000 INFO @ Sun, 03 Jun 2018 13:08:31: 9000000 INFO @ Sun, 03 Jun 2018 13:08:31: 9000000 INFO @ Sun, 03 Jun 2018 13:08:39: 10000000 INFO @ Sun, 03 Jun 2018 13:08:39: 10000000 INFO @ Sun, 03 Jun 2018 13:08:39: 10000000 INFO @ Sun, 03 Jun 2018 13:08:46: 11000000 INFO @ Sun, 03 Jun 2018 13:08:46: 11000000 INFO @ Sun, 03 Jun 2018 13:08:46: 11000000 INFO @ Sun, 03 Jun 2018 13:08:54: 12000000 INFO @ Sun, 03 Jun 2018 13:08:54: 12000000 INFO @ Sun, 03 Jun 2018 13:08:54: 12000000 INFO @ Sun, 03 Jun 2018 13:09:01: 13000000 INFO @ Sun, 03 Jun 2018 13:09:01: 13000000 INFO @ Sun, 03 Jun 2018 13:09:01: 13000000 INFO @ Sun, 03 Jun 2018 13:09:09: 14000000 INFO @ Sun, 03 Jun 2018 13:09:09: 14000000 INFO @ Sun, 03 Jun 2018 13:09:09: 14000000 INFO @ Sun, 03 Jun 2018 13:09:17: 15000000 INFO @ Sun, 03 Jun 2018 13:09:17: 15000000 INFO @ Sun, 03 Jun 2018 13:09:17: 15000000 INFO @ Sun, 03 Jun 2018 13:09:24: 16000000 INFO @ Sun, 03 Jun 2018 13:09:24: 16000000 INFO @ Sun, 03 Jun 2018 13:09:24: 16000000 INFO @ Sun, 03 Jun 2018 13:09:32: 17000000 INFO @ Sun, 03 Jun 2018 13:09:32: 17000000 INFO @ Sun, 03 Jun 2018 13:09:32: 17000000 INFO @ Sun, 03 Jun 2018 13:09:39: 18000000 INFO @ Sun, 03 Jun 2018 13:09:39: 18000000 INFO @ Sun, 03 Jun 2018 13:09:39: 18000000 INFO @ Sun, 03 Jun 2018 13:09:47: 19000000 INFO @ Sun, 03 Jun 2018 13:09:47: 19000000 INFO @ Sun, 03 Jun 2018 13:09:47: 19000000 INFO @ Sun, 03 Jun 2018 13:09:55: 20000000 INFO @ Sun, 03 Jun 2018 13:09:55: 20000000 INFO @ Sun, 03 Jun 2018 13:09:55: 20000000 INFO @ Sun, 03 Jun 2018 13:10:02: 21000000 INFO @ Sun, 03 Jun 2018 13:10:02: 21000000 INFO @ Sun, 03 Jun 2018 13:10:02: 21000000 INFO @ Sun, 03 Jun 2018 13:10:10: 22000000 INFO @ Sun, 03 Jun 2018 13:10:10: 22000000 INFO @ Sun, 03 Jun 2018 13:10:10: 22000000 INFO @ Sun, 03 Jun 2018 13:10:18: 23000000 INFO @ Sun, 03 Jun 2018 13:10:18: 23000000 INFO @ Sun, 03 Jun 2018 13:10:18: 23000000 INFO @ Sun, 03 Jun 2018 13:10:25: 24000000 INFO @ Sun, 03 Jun 2018 13:10:25: 24000000 INFO @ Sun, 03 Jun 2018 13:10:25: 24000000 INFO @ Sun, 03 Jun 2018 13:10:33: 25000000 INFO @ Sun, 03 Jun 2018 13:10:33: 25000000 INFO @ Sun, 03 Jun 2018 13:10:33: 25000000 INFO @ Sun, 03 Jun 2018 13:10:41: 26000000 INFO @ Sun, 03 Jun 2018 13:10:41: 26000000 INFO @ Sun, 03 Jun 2018 13:10:41: 26000000 INFO @ Sun, 03 Jun 2018 13:10:48: 27000000 INFO @ Sun, 03 Jun 2018 13:10:48: 27000000 INFO @ Sun, 03 Jun 2018 13:10:48: 27000000 INFO @ Sun, 03 Jun 2018 13:10:56: 28000000 INFO @ Sun, 03 Jun 2018 13:10:56: 28000000 INFO @ Sun, 03 Jun 2018 13:10:56: 28000000 INFO @ Sun, 03 Jun 2018 13:11:03: 29000000 INFO @ Sun, 03 Jun 2018 13:11:03: 29000000 INFO @ Sun, 03 Jun 2018 13:11:04: 29000000 INFO @ Sun, 03 Jun 2018 13:11:11: 30000000 INFO @ Sun, 03 Jun 2018 13:11:11: 30000000 INFO @ Sun, 03 Jun 2018 13:11:11: 30000000 INFO @ Sun, 03 Jun 2018 13:11:19: 31000000 INFO @ Sun, 03 Jun 2018 13:11:19: 31000000 INFO @ Sun, 03 Jun 2018 13:11:19: 31000000 INFO @ Sun, 03 Jun 2018 13:11:26: 32000000 INFO @ Sun, 03 Jun 2018 13:11:27: 32000000 INFO @ Sun, 03 Jun 2018 13:11:27: 32000000 INFO @ Sun, 03 Jun 2018 13:11:34: 33000000 INFO @ Sun, 03 Jun 2018 13:11:34: 33000000 INFO @ Sun, 03 Jun 2018 13:11:35: 33000000 INFO @ Sun, 03 Jun 2018 13:11:42: 34000000 INFO @ Sun, 03 Jun 2018 13:11:42: 34000000 INFO @ Sun, 03 Jun 2018 13:11:42: 34000000 INFO @ Sun, 03 Jun 2018 13:11:50: 35000000 INFO @ Sun, 03 Jun 2018 13:11:50: 35000000 INFO @ Sun, 03 Jun 2018 13:11:50: 35000000 INFO @ Sun, 03 Jun 2018 13:11:58: 36000000 INFO @ Sun, 03 Jun 2018 13:11:58: 36000000 INFO @ Sun, 03 Jun 2018 13:11:58: 36000000 INFO @ Sun, 03 Jun 2018 13:12:05: 37000000 INFO @ Sun, 03 Jun 2018 13:12:06: 37000000 INFO @ Sun, 03 Jun 2018 13:12:06: 37000000 INFO @ Sun, 03 Jun 2018 13:12:13: 38000000 INFO @ Sun, 03 Jun 2018 13:12:13: 38000000 INFO @ Sun, 03 Jun 2018 13:12:13: 38000000 INFO @ Sun, 03 Jun 2018 13:12:21: 39000000 INFO @ Sun, 03 Jun 2018 13:12:21: 39000000 INFO @ Sun, 03 Jun 2018 13:12:21: 39000000 INFO @ Sun, 03 Jun 2018 13:12:29: 40000000 INFO @ Sun, 03 Jun 2018 13:12:29: 40000000 INFO @ Sun, 03 Jun 2018 13:12:29: 40000000 INFO @ Sun, 03 Jun 2018 13:12:36: 41000000 INFO @ Sun, 03 Jun 2018 13:12:36: 41000000 INFO @ Sun, 03 Jun 2018 13:12:37: 41000000 INFO @ Sun, 03 Jun 2018 13:12:44: 42000000 INFO @ Sun, 03 Jun 2018 13:12:44: 42000000 INFO @ Sun, 03 Jun 2018 13:12:44: 42000000 INFO @ Sun, 03 Jun 2018 13:12:52: 43000000 INFO @ Sun, 03 Jun 2018 13:12:52: 43000000 INFO @ Sun, 03 Jun 2018 13:12:52: 43000000 INFO @ Sun, 03 Jun 2018 13:13:00: 44000000 INFO @ Sun, 03 Jun 2018 13:13:00: 44000000 INFO @ Sun, 03 Jun 2018 13:13:00: 44000000 INFO @ Sun, 03 Jun 2018 13:13:07: 45000000 INFO @ Sun, 03 Jun 2018 13:13:07: 45000000 INFO @ Sun, 03 Jun 2018 13:13:07: 45000000 INFO @ Sun, 03 Jun 2018 13:13:15: 46000000 INFO @ Sun, 03 Jun 2018 13:13:15: 46000000 INFO @ Sun, 03 Jun 2018 13:13:15: 46000000 INFO @ Sun, 03 Jun 2018 13:13:23: 47000000 INFO @ Sun, 03 Jun 2018 13:13:23: 47000000 INFO @ Sun, 03 Jun 2018 13:13:23: 47000000 INFO @ Sun, 03 Jun 2018 13:13:31: 48000000 INFO @ Sun, 03 Jun 2018 13:13:31: 48000000 INFO @ Sun, 03 Jun 2018 13:13:31: 48000000 INFO @ Sun, 03 Jun 2018 13:13:38: 49000000 INFO @ Sun, 03 Jun 2018 13:13:39: 49000000 INFO @ Sun, 03 Jun 2018 13:13:39: 49000000 INFO @ Sun, 03 Jun 2018 13:13:39: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 13:13:39: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 13:13:39: #1 total tags in treatment: 49053298 INFO @ Sun, 03 Jun 2018 13:13:39: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 13:13:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 13:13:39: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 13:13:39: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 13:13:39: #1 total tags in treatment: 49053298 INFO @ Sun, 03 Jun 2018 13:13:39: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 13:13:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 13:13:39: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 13:13:39: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 13:13:39: #1 total tags in treatment: 49053298 INFO @ Sun, 03 Jun 2018 13:13:39: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 13:13:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 13:13:40: #1 tags after filtering in treatment: 49053298 INFO @ Sun, 03 Jun 2018 13:13:40: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 03 Jun 2018 13:13:40: #1 finished! INFO @ Sun, 03 Jun 2018 13:13:40: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 13:13:40: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 13:13:40: #1 tags after filtering in treatment: 49053298 INFO @ Sun, 03 Jun 2018 13:13:40: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 03 Jun 2018 13:13:40: #1 finished! INFO @ Sun, 03 Jun 2018 13:13:40: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 13:13:40: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 13:13:40: #1 tags after filtering in treatment: 49053298 INFO @ Sun, 03 Jun 2018 13:13:40: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 03 Jun 2018 13:13:40: #1 finished! INFO @ Sun, 03 Jun 2018 13:13:40: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 13:13:40: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 13:13:43: #2 number of paired peaks: 0 WARNING @ Sun, 03 Jun 2018 13:13:43: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 03 Jun 2018 13:13:43: Process for pairing-model is terminated! INFO @ Sun, 03 Jun 2018 13:13:43: #2 number of paired peaks: 0 WARNING @ Sun, 03 Jun 2018 13:13:43: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 03 Jun 2018 13:13:43: Process for pairing-model is terminated! cat: SRX2985929.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX2985929.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2985929.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2985929.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2985929.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2985929.20_model.r': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling rm: cannot remove `SRX2985929.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2985929.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sun, 03 Jun 2018 13:13:43: #2 number of paired peaks: 0 WARNING @ Sun, 03 Jun 2018 13:13:43: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 03 Jun 2018 13:13:43: Process for pairing-model is terminated! cat: SRX2985929.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2985929.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2985929.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2985929.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。