Job ID = 1292011 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 30,618,210 reads read : 61,236,420 reads written : 61,236,420 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:33:16 30618210 reads; of these: 30618210 (100.00%) were paired; of these: 1501514 (4.90%) aligned concordantly 0 times 24460693 (79.89%) aligned concordantly exactly 1 time 4656003 (15.21%) aligned concordantly >1 times ---- 1501514 pairs aligned concordantly 0 times; of these: 504520 (33.60%) aligned discordantly 1 time ---- 996994 pairs aligned 0 times concordantly or discordantly; of these: 1993988 mates make up the pairs; of these: 1452033 (72.82%) aligned 0 times 334056 (16.75%) aligned exactly 1 time 207899 (10.43%) aligned >1 times 97.63% overall alignment rate Time searching: 00:33:16 Overall time: 00:33:16 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 783893 / 29598325 = 0.0265 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 02 Jun 2019 18:24:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 18:24:04: #1 read tag files... INFO @ Sun, 02 Jun 2019 18:24:04: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 18:24:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 18:24:04: #1 read tag files... INFO @ Sun, 02 Jun 2019 18:24:04: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 18:24:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 18:24:04: #1 read tag files... INFO @ Sun, 02 Jun 2019 18:24:04: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 18:24:12: 1000000 INFO @ Sun, 02 Jun 2019 18:24:13: 1000000 INFO @ Sun, 02 Jun 2019 18:24:13: 1000000 INFO @ Sun, 02 Jun 2019 18:24:18: 2000000 INFO @ Sun, 02 Jun 2019 18:24:21: 2000000 INFO @ Sun, 02 Jun 2019 18:24:22: 2000000 INFO @ Sun, 02 Jun 2019 18:24:25: 3000000 INFO @ Sun, 02 Jun 2019 18:24:28: 3000000 INFO @ Sun, 02 Jun 2019 18:24:31: 3000000 INFO @ Sun, 02 Jun 2019 18:24:32: 4000000 INFO @ Sun, 02 Jun 2019 18:24:37: 4000000 INFO @ Sun, 02 Jun 2019 18:24:39: 5000000 INFO @ Sun, 02 Jun 2019 18:24:40: 4000000 INFO @ Sun, 02 Jun 2019 18:24:45: 6000000 INFO @ Sun, 02 Jun 2019 18:24:46: 5000000 INFO @ Sun, 02 Jun 2019 18:24:49: 5000000 INFO @ Sun, 02 Jun 2019 18:24:52: 7000000 INFO @ Sun, 02 Jun 2019 18:24:53: 6000000 INFO @ Sun, 02 Jun 2019 18:24:58: 6000000 INFO @ Sun, 02 Jun 2019 18:24:59: 8000000 INFO @ Sun, 02 Jun 2019 18:25:01: 7000000 INFO @ Sun, 02 Jun 2019 18:25:06: 9000000 INFO @ Sun, 02 Jun 2019 18:25:07: 7000000 INFO @ Sun, 02 Jun 2019 18:25:09: 8000000 INFO @ Sun, 02 Jun 2019 18:25:12: 10000000 INFO @ Sun, 02 Jun 2019 18:25:15: 8000000 INFO @ Sun, 02 Jun 2019 18:25:16: 9000000 INFO @ Sun, 02 Jun 2019 18:25:19: 11000000 INFO @ Sun, 02 Jun 2019 18:25:23: 9000000 INFO @ Sun, 02 Jun 2019 18:25:25: 10000000 INFO @ Sun, 02 Jun 2019 18:25:26: 12000000 INFO @ Sun, 02 Jun 2019 18:25:31: 10000000 INFO @ Sun, 02 Jun 2019 18:25:32: 11000000 INFO @ Sun, 02 Jun 2019 18:25:33: 13000000 INFO @ Sun, 02 Jun 2019 18:25:39: 11000000 INFO @ Sun, 02 Jun 2019 18:25:39: 14000000 INFO @ Sun, 02 Jun 2019 18:25:40: 12000000 INFO @ Sun, 02 Jun 2019 18:25:46: 15000000 INFO @ Sun, 02 Jun 2019 18:25:48: 13000000 INFO @ Sun, 02 Jun 2019 18:25:48: 12000000 INFO @ Sun, 02 Jun 2019 18:25:53: 16000000 INFO @ Sun, 02 Jun 2019 18:25:55: 14000000 INFO @ Sun, 02 Jun 2019 18:25:56: 13000000 INFO @ Sun, 02 Jun 2019 18:26:00: 17000000 INFO @ Sun, 02 Jun 2019 18:26:03: 15000000 INFO @ Sun, 02 Jun 2019 18:26:04: 14000000 INFO @ Sun, 02 Jun 2019 18:26:06: 18000000 INFO @ Sun, 02 Jun 2019 18:26:10: 16000000 INFO @ Sun, 02 Jun 2019 18:26:11: 15000000 INFO @ Sun, 02 Jun 2019 18:26:13: 19000000 INFO @ Sun, 02 Jun 2019 18:26:18: 17000000 INFO @ Sun, 02 Jun 2019 18:26:19: 16000000 INFO @ Sun, 02 Jun 2019 18:26:20: 20000000 INFO @ Sun, 02 Jun 2019 18:26:26: 18000000 INFO @ Sun, 02 Jun 2019 18:26:26: 17000000 INFO @ Sun, 02 Jun 2019 18:26:27: 21000000 INFO @ Sun, 02 Jun 2019 18:26:33: 22000000 INFO @ Sun, 02 Jun 2019 18:26:34: 18000000 INFO @ Sun, 02 Jun 2019 18:26:35: 19000000 INFO @ Sun, 02 Jun 2019 18:26:40: 23000000 INFO @ Sun, 02 Jun 2019 18:26:42: 19000000 INFO @ Sun, 02 Jun 2019 18:26:43: 20000000 INFO @ Sun, 02 Jun 2019 18:26:47: 24000000 INFO @ Sun, 02 Jun 2019 18:26:49: 20000000 INFO @ Sun, 02 Jun 2019 18:26:51: 21000000 INFO @ Sun, 02 Jun 2019 18:26:53: 25000000 INFO @ Sun, 02 Jun 2019 18:26:57: 21000000 INFO @ Sun, 02 Jun 2019 18:26:59: 22000000 INFO @ Sun, 02 Jun 2019 18:27:00: 26000000 INFO @ Sun, 02 Jun 2019 18:27:04: 22000000 INFO @ Sun, 02 Jun 2019 18:27:06: 23000000 INFO @ Sun, 02 Jun 2019 18:27:07: 27000000 INFO @ Sun, 02 Jun 2019 18:27:12: 23000000 INFO @ Sun, 02 Jun 2019 18:27:14: 28000000 INFO @ Sun, 02 Jun 2019 18:27:14: 24000000 INFO @ Sun, 02 Jun 2019 18:27:19: 24000000 INFO @ Sun, 02 Jun 2019 18:27:20: 29000000 INFO @ Sun, 02 Jun 2019 18:27:21: 25000000 INFO @ Sun, 02 Jun 2019 18:27:27: 25000000 INFO @ Sun, 02 Jun 2019 18:27:27: 30000000 INFO @ Sun, 02 Jun 2019 18:27:29: 26000000 INFO @ Sun, 02 Jun 2019 18:27:34: 31000000 INFO @ Sun, 02 Jun 2019 18:27:34: 26000000 INFO @ Sun, 02 Jun 2019 18:27:36: 27000000 INFO @ Sun, 02 Jun 2019 18:27:41: 32000000 INFO @ Sun, 02 Jun 2019 18:27:42: 27000000 INFO @ Sun, 02 Jun 2019 18:27:44: 28000000 INFO @ Sun, 02 Jun 2019 18:27:47: 33000000 INFO @ Sun, 02 Jun 2019 18:27:50: 28000000 INFO @ Sun, 02 Jun 2019 18:27:52: 29000000 INFO @ Sun, 02 Jun 2019 18:27:54: 34000000 INFO @ Sun, 02 Jun 2019 18:27:57: 29000000 INFO @ Sun, 02 Jun 2019 18:28:00: 30000000 INFO @ Sun, 02 Jun 2019 18:28:01: 35000000 INFO @ Sun, 02 Jun 2019 18:28:05: 30000000 INFO @ Sun, 02 Jun 2019 18:28:08: 36000000 INFO @ Sun, 02 Jun 2019 18:28:08: 31000000 INFO @ Sun, 02 Jun 2019 18:28:13: 31000000 INFO @ Sun, 02 Jun 2019 18:28:15: 37000000 INFO @ Sun, 02 Jun 2019 18:28:16: 32000000 INFO @ Sun, 02 Jun 2019 18:28:21: 32000000 INFO @ Sun, 02 Jun 2019 18:28:22: 38000000 INFO @ Sun, 02 Jun 2019 18:28:25: 33000000 INFO @ Sun, 02 Jun 2019 18:28:30: 39000000 INFO @ Sun, 02 Jun 2019 18:28:30: 33000000 INFO @ Sun, 02 Jun 2019 18:28:34: 34000000 INFO @ Sun, 02 Jun 2019 18:28:37: 40000000 INFO @ Sun, 02 Jun 2019 18:28:38: 34000000 INFO @ Sun, 02 Jun 2019 18:28:42: 35000000 INFO @ Sun, 02 Jun 2019 18:28:44: 41000000 INFO @ Sun, 02 Jun 2019 18:28:47: 35000000 INFO @ Sun, 02 Jun 2019 18:28:51: 36000000 INFO @ Sun, 02 Jun 2019 18:28:51: 42000000 INFO @ Sun, 02 Jun 2019 18:28:54: 36000000 INFO @ Sun, 02 Jun 2019 18:28:58: 43000000 INFO @ Sun, 02 Jun 2019 18:28:59: 37000000 INFO @ Sun, 02 Jun 2019 18:29:03: 37000000 INFO @ Sun, 02 Jun 2019 18:29:05: 44000000 INFO @ Sun, 02 Jun 2019 18:29:07: 38000000 INFO @ Sun, 02 Jun 2019 18:29:11: 38000000 INFO @ Sun, 02 Jun 2019 18:29:13: 45000000 INFO @ Sun, 02 Jun 2019 18:29:15: 39000000 INFO @ Sun, 02 Jun 2019 18:29:19: 39000000 INFO @ Sun, 02 Jun 2019 18:29:21: 46000000 INFO @ Sun, 02 Jun 2019 18:29:23: 40000000 INFO @ Sun, 02 Jun 2019 18:29:27: 40000000 INFO @ Sun, 02 Jun 2019 18:29:27: 47000000 INFO @ Sun, 02 Jun 2019 18:29:32: 41000000 INFO @ Sun, 02 Jun 2019 18:29:34: 41000000 INFO @ Sun, 02 Jun 2019 18:29:34: 48000000 INFO @ Sun, 02 Jun 2019 18:29:40: 42000000 INFO @ Sun, 02 Jun 2019 18:29:41: 49000000 INFO @ Sun, 02 Jun 2019 18:29:41: 42000000 INFO @ Sun, 02 Jun 2019 18:29:48: 43000000 INFO @ Sun, 02 Jun 2019 18:29:48: 50000000 INFO @ Sun, 02 Jun 2019 18:29:49: 43000000 INFO @ Sun, 02 Jun 2019 18:29:54: 51000000 INFO @ Sun, 02 Jun 2019 18:29:55: 44000000 INFO @ Sun, 02 Jun 2019 18:29:56: 44000000 INFO @ Sun, 02 Jun 2019 18:30:01: 52000000 INFO @ Sun, 02 Jun 2019 18:30:03: 45000000 INFO @ Sun, 02 Jun 2019 18:30:04: 45000000 INFO @ Sun, 02 Jun 2019 18:30:08: 53000000 INFO @ Sun, 02 Jun 2019 18:30:11: 46000000 INFO @ Sun, 02 Jun 2019 18:30:11: 46000000 INFO @ Sun, 02 Jun 2019 18:30:14: 54000000 INFO @ Sun, 02 Jun 2019 18:30:19: 47000000 INFO @ Sun, 02 Jun 2019 18:30:19: 47000000 INFO @ Sun, 02 Jun 2019 18:30:21: 55000000 INFO @ Sun, 02 Jun 2019 18:30:27: 48000000 INFO @ Sun, 02 Jun 2019 18:30:27: 48000000 INFO @ Sun, 02 Jun 2019 18:30:28: 56000000 INFO @ Sun, 02 Jun 2019 18:30:34: 57000000 INFO @ Sun, 02 Jun 2019 18:30:34: 49000000 INFO @ Sun, 02 Jun 2019 18:30:35: 49000000 INFO @ Sun, 02 Jun 2019 18:30:41: 58000000 INFO @ Sun, 02 Jun 2019 18:30:42: 50000000 INFO @ Sun, 02 Jun 2019 18:30:43: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 18:30:43: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 18:30:43: #1 total tags in treatment: 28335224 INFO @ Sun, 02 Jun 2019 18:30:43: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 18:30:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 18:30:43: 50000000 INFO @ Sun, 02 Jun 2019 18:30:44: #1 tags after filtering in treatment: 24255604 INFO @ Sun, 02 Jun 2019 18:30:44: #1 Redundant rate of treatment: 0.14 INFO @ Sun, 02 Jun 2019 18:30:44: #1 finished! INFO @ Sun, 02 Jun 2019 18:30:44: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 18:30:44: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 18:30:46: #2 number of paired peaks: 169 WARNING @ Sun, 02 Jun 2019 18:30:46: Fewer paired peaks (169) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 169 pairs to build model! INFO @ Sun, 02 Jun 2019 18:30:46: start model_add_line... INFO @ Sun, 02 Jun 2019 18:30:47: start X-correlation... INFO @ Sun, 02 Jun 2019 18:30:47: end of X-cor INFO @ Sun, 02 Jun 2019 18:30:47: #2 finished! INFO @ Sun, 02 Jun 2019 18:30:47: #2 predicted fragment length is 51 bps INFO @ Sun, 02 Jun 2019 18:30:47: #2 alternative fragment length(s) may be 2,51 bps INFO @ Sun, 02 Jun 2019 18:30:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.20_model.r WARNING @ Sun, 02 Jun 2019 18:30:47: #2 Since the d (51) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 18:30:47: #2 You may need to consider one of the other alternative d(s): 2,51 WARNING @ Sun, 02 Jun 2019 18:30:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 18:30:47: #3 Call peaks... INFO @ Sun, 02 Jun 2019 18:30:47: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 18:30:49: 51000000 INFO @ Sun, 02 Jun 2019 18:30:51: 51000000 INFO @ Sun, 02 Jun 2019 18:30:56: 52000000 INFO @ Sun, 02 Jun 2019 18:30:59: 52000000 INFO @ Sun, 02 Jun 2019 18:31:04: 53000000 INFO @ Sun, 02 Jun 2019 18:31:07: 53000000 INFO @ Sun, 02 Jun 2019 18:31:11: 54000000 INFO @ Sun, 02 Jun 2019 18:31:14: 54000000 INFO @ Sun, 02 Jun 2019 18:31:19: 55000000 INFO @ Sun, 02 Jun 2019 18:31:22: 55000000 INFO @ Sun, 02 Jun 2019 18:31:26: 56000000 INFO @ Sun, 02 Jun 2019 18:31:29: 56000000 INFO @ Sun, 02 Jun 2019 18:31:34: 57000000 INFO @ Sun, 02 Jun 2019 18:31:37: 57000000 INFO @ Sun, 02 Jun 2019 18:31:41: 58000000 INFO @ Sun, 02 Jun 2019 18:31:43: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 18:31:43: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 18:31:43: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 18:31:43: #1 total tags in treatment: 28335224 INFO @ Sun, 02 Jun 2019 18:31:43: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 18:31:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 18:31:44: #1 tags after filtering in treatment: 24255604 INFO @ Sun, 02 Jun 2019 18:31:44: #1 Redundant rate of treatment: 0.14 INFO @ Sun, 02 Jun 2019 18:31:44: #1 finished! INFO @ Sun, 02 Jun 2019 18:31:44: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 18:31:44: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 18:31:44: 58000000 INFO @ Sun, 02 Jun 2019 18:31:46: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 18:31:46: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 18:31:46: #1 total tags in treatment: 28335224 INFO @ Sun, 02 Jun 2019 18:31:46: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 18:31:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 18:31:47: #2 number of paired peaks: 169 WARNING @ Sun, 02 Jun 2019 18:31:47: Fewer paired peaks (169) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 169 pairs to build model! INFO @ Sun, 02 Jun 2019 18:31:47: start model_add_line... INFO @ Sun, 02 Jun 2019 18:31:47: start X-correlation... INFO @ Sun, 02 Jun 2019 18:31:47: end of X-cor INFO @ Sun, 02 Jun 2019 18:31:47: #2 finished! INFO @ Sun, 02 Jun 2019 18:31:47: #2 predicted fragment length is 51 bps INFO @ Sun, 02 Jun 2019 18:31:47: #2 alternative fragment length(s) may be 2,51 bps INFO @ Sun, 02 Jun 2019 18:31:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.10_model.r WARNING @ Sun, 02 Jun 2019 18:31:47: #2 Since the d (51) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 18:31:47: #2 You may need to consider one of the other alternative d(s): 2,51 WARNING @ Sun, 02 Jun 2019 18:31:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 18:31:47: #3 Call peaks... INFO @ Sun, 02 Jun 2019 18:31:47: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 18:31:47: #1 tags after filtering in treatment: 24255604 INFO @ Sun, 02 Jun 2019 18:31:47: #1 Redundant rate of treatment: 0.14 INFO @ Sun, 02 Jun 2019 18:31:47: #1 finished! INFO @ Sun, 02 Jun 2019 18:31:47: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 18:31:47: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 18:31:50: #2 number of paired peaks: 169 WARNING @ Sun, 02 Jun 2019 18:31:50: Fewer paired peaks (169) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 169 pairs to build model! INFO @ Sun, 02 Jun 2019 18:31:50: start model_add_line... INFO @ Sun, 02 Jun 2019 18:31:50: start X-correlation... INFO @ Sun, 02 Jun 2019 18:31:50: end of X-cor INFO @ Sun, 02 Jun 2019 18:31:50: #2 finished! INFO @ Sun, 02 Jun 2019 18:31:50: #2 predicted fragment length is 51 bps INFO @ Sun, 02 Jun 2019 18:31:50: #2 alternative fragment length(s) may be 2,51 bps INFO @ Sun, 02 Jun 2019 18:31:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.05_model.r WARNING @ Sun, 02 Jun 2019 18:31:50: #2 Since the d (51) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 18:31:50: #2 You may need to consider one of the other alternative d(s): 2,51 WARNING @ Sun, 02 Jun 2019 18:31:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 18:31:50: #3 Call peaks... INFO @ Sun, 02 Jun 2019 18:31:50: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 18:32:10: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.20_peaks.xls INFO @ Sun, 02 Jun 2019 18:32:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.20_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 18:32:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.20_summits.bed INFO @ Sun, 02 Jun 2019 18:32:10: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (129 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 18:32:43: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 18:32:47: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 18:33:10: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.10_peaks.xls INFO @ Sun, 02 Jun 2019 18:33:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.10_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 18:33:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.10_summits.bed INFO @ Sun, 02 Jun 2019 18:33:10: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (408 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 18:33:13: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.05_peaks.xls INFO @ Sun, 02 Jun 2019 18:33:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.05_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 18:33:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX2978707/SRX2978707.05_summits.bed INFO @ Sun, 02 Jun 2019 18:33:13: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (2383 records, 4 fields): 8 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。