Job ID = 1292004 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 35,676,356 reads read : 71,352,712 reads written : 71,352,712 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:36:44 35676356 reads; of these: 35676356 (100.00%) were paired; of these: 3817010 (10.70%) aligned concordantly 0 times 27422868 (76.87%) aligned concordantly exactly 1 time 4436478 (12.44%) aligned concordantly >1 times ---- 3817010 pairs aligned concordantly 0 times; of these: 989697 (25.93%) aligned discordantly 1 time ---- 2827313 pairs aligned 0 times concordantly or discordantly; of these: 5654626 mates make up the pairs; of these: 3668290 (64.87%) aligned 0 times 1435307 (25.38%) aligned exactly 1 time 551029 (9.74%) aligned >1 times 94.86% overall alignment rate Time searching: 00:36:44 Overall time: 00:36:44 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 5541006 / 32778353 = 0.1690 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 02 Jun 2019 18:28:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 18:28:37: #1 read tag files... INFO @ Sun, 02 Jun 2019 18:28:37: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 18:28:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 18:28:37: #1 read tag files... INFO @ Sun, 02 Jun 2019 18:28:37: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 18:28:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 18:28:37: #1 read tag files... INFO @ Sun, 02 Jun 2019 18:28:37: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 18:28:44: 1000000 INFO @ Sun, 02 Jun 2019 18:28:45: 1000000 INFO @ Sun, 02 Jun 2019 18:28:45: 1000000 INFO @ Sun, 02 Jun 2019 18:28:50: 2000000 INFO @ Sun, 02 Jun 2019 18:28:52: 2000000 INFO @ Sun, 02 Jun 2019 18:28:52: 2000000 INFO @ Sun, 02 Jun 2019 18:28:56: 3000000 INFO @ Sun, 02 Jun 2019 18:28:59: 3000000 INFO @ Sun, 02 Jun 2019 18:29:00: 3000000 INFO @ Sun, 02 Jun 2019 18:29:02: 4000000 INFO @ Sun, 02 Jun 2019 18:29:07: 4000000 INFO @ Sun, 02 Jun 2019 18:29:07: 4000000 INFO @ Sun, 02 Jun 2019 18:29:09: 5000000 INFO @ Sun, 02 Jun 2019 18:29:14: 5000000 INFO @ Sun, 02 Jun 2019 18:29:14: 5000000 INFO @ Sun, 02 Jun 2019 18:29:15: 6000000 INFO @ Sun, 02 Jun 2019 18:29:21: 6000000 INFO @ Sun, 02 Jun 2019 18:29:21: 7000000 INFO @ Sun, 02 Jun 2019 18:29:22: 6000000 INFO @ Sun, 02 Jun 2019 18:29:27: 8000000 INFO @ Sun, 02 Jun 2019 18:29:28: 7000000 INFO @ Sun, 02 Jun 2019 18:29:29: 7000000 INFO @ Sun, 02 Jun 2019 18:29:34: 9000000 INFO @ Sun, 02 Jun 2019 18:29:35: 8000000 INFO @ Sun, 02 Jun 2019 18:29:36: 8000000 INFO @ Sun, 02 Jun 2019 18:29:40: 10000000 INFO @ Sun, 02 Jun 2019 18:29:42: 9000000 INFO @ Sun, 02 Jun 2019 18:29:43: 9000000 INFO @ Sun, 02 Jun 2019 18:29:46: 11000000 INFO @ Sun, 02 Jun 2019 18:29:49: 10000000 INFO @ Sun, 02 Jun 2019 18:29:50: 10000000 INFO @ Sun, 02 Jun 2019 18:29:52: 12000000 INFO @ Sun, 02 Jun 2019 18:29:56: 11000000 INFO @ Sun, 02 Jun 2019 18:29:57: 11000000 INFO @ Sun, 02 Jun 2019 18:29:58: 13000000 INFO @ Sun, 02 Jun 2019 18:30:03: 12000000 INFO @ Sun, 02 Jun 2019 18:30:05: 12000000 INFO @ Sun, 02 Jun 2019 18:30:05: 14000000 INFO @ Sun, 02 Jun 2019 18:30:11: 13000000 INFO @ Sun, 02 Jun 2019 18:30:12: 13000000 INFO @ Sun, 02 Jun 2019 18:30:12: 15000000 INFO @ Sun, 02 Jun 2019 18:30:19: 14000000 INFO @ Sun, 02 Jun 2019 18:30:19: 14000000 INFO @ Sun, 02 Jun 2019 18:30:20: 16000000 INFO @ Sun, 02 Jun 2019 18:30:26: 17000000 INFO @ Sun, 02 Jun 2019 18:30:26: 15000000 INFO @ Sun, 02 Jun 2019 18:30:27: 15000000 INFO @ Sun, 02 Jun 2019 18:30:32: 18000000 INFO @ Sun, 02 Jun 2019 18:30:33: 16000000 INFO @ Sun, 02 Jun 2019 18:30:34: 16000000 INFO @ Sun, 02 Jun 2019 18:30:38: 19000000 INFO @ Sun, 02 Jun 2019 18:30:40: 17000000 INFO @ Sun, 02 Jun 2019 18:30:41: 17000000 INFO @ Sun, 02 Jun 2019 18:30:44: 20000000 INFO @ Sun, 02 Jun 2019 18:30:47: 18000000 INFO @ Sun, 02 Jun 2019 18:30:48: 18000000 INFO @ Sun, 02 Jun 2019 18:30:51: 21000000 INFO @ Sun, 02 Jun 2019 18:30:54: 19000000 INFO @ Sun, 02 Jun 2019 18:30:55: 19000000 INFO @ Sun, 02 Jun 2019 18:30:57: 22000000 INFO @ Sun, 02 Jun 2019 18:31:01: 20000000 INFO @ Sun, 02 Jun 2019 18:31:02: 20000000 INFO @ Sun, 02 Jun 2019 18:31:03: 23000000 INFO @ Sun, 02 Jun 2019 18:31:08: 21000000 INFO @ Sun, 02 Jun 2019 18:31:09: 24000000 INFO @ Sun, 02 Jun 2019 18:31:09: 21000000 INFO @ Sun, 02 Jun 2019 18:31:15: 22000000 INFO @ Sun, 02 Jun 2019 18:31:15: 25000000 INFO @ Sun, 02 Jun 2019 18:31:16: 22000000 INFO @ Sun, 02 Jun 2019 18:31:21: 26000000 INFO @ Sun, 02 Jun 2019 18:31:22: 23000000 INFO @ Sun, 02 Jun 2019 18:31:23: 23000000 INFO @ Sun, 02 Jun 2019 18:31:27: 27000000 INFO @ Sun, 02 Jun 2019 18:31:28: 24000000 INFO @ Sun, 02 Jun 2019 18:31:31: 24000000 INFO @ Sun, 02 Jun 2019 18:31:34: 28000000 INFO @ Sun, 02 Jun 2019 18:31:35: 25000000 INFO @ Sun, 02 Jun 2019 18:31:38: 25000000 INFO @ Sun, 02 Jun 2019 18:31:40: 29000000 INFO @ Sun, 02 Jun 2019 18:31:42: 26000000 INFO @ Sun, 02 Jun 2019 18:31:45: 26000000 INFO @ Sun, 02 Jun 2019 18:31:46: 30000000 INFO @ Sun, 02 Jun 2019 18:31:49: 27000000 INFO @ Sun, 02 Jun 2019 18:31:51: 27000000 INFO @ Sun, 02 Jun 2019 18:31:52: 31000000 INFO @ Sun, 02 Jun 2019 18:31:56: 28000000 INFO @ Sun, 02 Jun 2019 18:31:58: 32000000 INFO @ Sun, 02 Jun 2019 18:31:58: 28000000 INFO @ Sun, 02 Jun 2019 18:32:03: 29000000 INFO @ Sun, 02 Jun 2019 18:32:04: 33000000 INFO @ Sun, 02 Jun 2019 18:32:05: 29000000 INFO @ Sun, 02 Jun 2019 18:32:10: 30000000 INFO @ Sun, 02 Jun 2019 18:32:10: 34000000 INFO @ Sun, 02 Jun 2019 18:32:12: 30000000 INFO @ Sun, 02 Jun 2019 18:32:17: 31000000 INFO @ Sun, 02 Jun 2019 18:32:17: 35000000 INFO @ Sun, 02 Jun 2019 18:32:19: 31000000 INFO @ Sun, 02 Jun 2019 18:32:23: 36000000 INFO @ Sun, 02 Jun 2019 18:32:23: 32000000 INFO @ Sun, 02 Jun 2019 18:32:26: 32000000 INFO @ Sun, 02 Jun 2019 18:32:29: 37000000 INFO @ Sun, 02 Jun 2019 18:32:30: 33000000 INFO @ Sun, 02 Jun 2019 18:32:33: 33000000 INFO @ Sun, 02 Jun 2019 18:32:35: 38000000 INFO @ Sun, 02 Jun 2019 18:32:37: 34000000 INFO @ Sun, 02 Jun 2019 18:32:40: 34000000 INFO @ Sun, 02 Jun 2019 18:32:41: 39000000 INFO @ Sun, 02 Jun 2019 18:32:44: 35000000 INFO @ Sun, 02 Jun 2019 18:32:47: 35000000 INFO @ Sun, 02 Jun 2019 18:32:47: 40000000 INFO @ Sun, 02 Jun 2019 18:32:50: 36000000 INFO @ Sun, 02 Jun 2019 18:32:53: 36000000 INFO @ Sun, 02 Jun 2019 18:32:54: 41000000 INFO @ Sun, 02 Jun 2019 18:32:57: 37000000 INFO @ Sun, 02 Jun 2019 18:33:00: 42000000 INFO @ Sun, 02 Jun 2019 18:33:00: 37000000 INFO @ Sun, 02 Jun 2019 18:33:04: 38000000 INFO @ Sun, 02 Jun 2019 18:33:06: 43000000 INFO @ Sun, 02 Jun 2019 18:33:07: 38000000 INFO @ Sun, 02 Jun 2019 18:33:10: 39000000 INFO @ Sun, 02 Jun 2019 18:33:12: 44000000 INFO @ Sun, 02 Jun 2019 18:33:14: 39000000 INFO @ Sun, 02 Jun 2019 18:33:17: 40000000 INFO @ Sun, 02 Jun 2019 18:33:18: 45000000 INFO @ Sun, 02 Jun 2019 18:33:20: 40000000 INFO @ Sun, 02 Jun 2019 18:33:24: 41000000 INFO @ Sun, 02 Jun 2019 18:33:24: 46000000 INFO @ Sun, 02 Jun 2019 18:33:27: 41000000 INFO @ Sun, 02 Jun 2019 18:33:30: 47000000 INFO @ Sun, 02 Jun 2019 18:33:30: 42000000 INFO @ Sun, 02 Jun 2019 18:33:34: 42000000 INFO @ Sun, 02 Jun 2019 18:33:36: 48000000 INFO @ Sun, 02 Jun 2019 18:33:37: 43000000 INFO @ Sun, 02 Jun 2019 18:33:41: 43000000 INFO @ Sun, 02 Jun 2019 18:33:42: 49000000 INFO @ Sun, 02 Jun 2019 18:33:44: 44000000 INFO @ Sun, 02 Jun 2019 18:33:48: 44000000 INFO @ Sun, 02 Jun 2019 18:33:48: 50000000 INFO @ Sun, 02 Jun 2019 18:33:51: 45000000 INFO @ Sun, 02 Jun 2019 18:33:54: 51000000 INFO @ Sun, 02 Jun 2019 18:33:55: 45000000 INFO @ Sun, 02 Jun 2019 18:33:57: 46000000 INFO @ Sun, 02 Jun 2019 18:34:00: 52000000 INFO @ Sun, 02 Jun 2019 18:34:01: 46000000 INFO @ Sun, 02 Jun 2019 18:34:04: 47000000 INFO @ Sun, 02 Jun 2019 18:34:06: 53000000 INFO @ Sun, 02 Jun 2019 18:34:08: 47000000 INFO @ Sun, 02 Jun 2019 18:34:11: 48000000 INFO @ Sun, 02 Jun 2019 18:34:12: 54000000 INFO @ Sun, 02 Jun 2019 18:34:15: 48000000 INFO @ Sun, 02 Jun 2019 18:34:17: 49000000 INFO @ Sun, 02 Jun 2019 18:34:18: 55000000 INFO @ Sun, 02 Jun 2019 18:34:22: 49000000 INFO @ Sun, 02 Jun 2019 18:34:24: 50000000 INFO @ Sun, 02 Jun 2019 18:34:24: 56000000 INFO @ Sun, 02 Jun 2019 18:34:28: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 18:34:28: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 18:34:28: #1 total tags in treatment: 26406720 INFO @ Sun, 02 Jun 2019 18:34:28: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 18:34:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 18:34:28: 50000000 INFO @ Sun, 02 Jun 2019 18:34:29: #1 tags after filtering in treatment: 23434359 INFO @ Sun, 02 Jun 2019 18:34:29: #1 Redundant rate of treatment: 0.11 INFO @ Sun, 02 Jun 2019 18:34:29: #1 finished! INFO @ Sun, 02 Jun 2019 18:34:29: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 18:34:29: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 18:34:30: 51000000 INFO @ Sun, 02 Jun 2019 18:34:31: #2 number of paired peaks: 210 WARNING @ Sun, 02 Jun 2019 18:34:31: Fewer paired peaks (210) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 210 pairs to build model! INFO @ Sun, 02 Jun 2019 18:34:31: start model_add_line... INFO @ Sun, 02 Jun 2019 18:34:31: start X-correlation... INFO @ Sun, 02 Jun 2019 18:34:31: end of X-cor INFO @ Sun, 02 Jun 2019 18:34:31: #2 finished! INFO @ Sun, 02 Jun 2019 18:34:31: #2 predicted fragment length is 90 bps INFO @ Sun, 02 Jun 2019 18:34:31: #2 alternative fragment length(s) may be 2,54,78,83,90 bps INFO @ Sun, 02 Jun 2019 18:34:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.05_model.r WARNING @ Sun, 02 Jun 2019 18:34:31: #2 Since the d (90) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 18:34:31: #2 You may need to consider one of the other alternative d(s): 2,54,78,83,90 WARNING @ Sun, 02 Jun 2019 18:34:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 18:34:31: #3 Call peaks... INFO @ Sun, 02 Jun 2019 18:34:31: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 18:34:35: 51000000 INFO @ Sun, 02 Jun 2019 18:34:37: 52000000 INFO @ Sun, 02 Jun 2019 18:34:42: 52000000 INFO @ Sun, 02 Jun 2019 18:34:44: 53000000 INFO @ Sun, 02 Jun 2019 18:34:48: 53000000 INFO @ Sun, 02 Jun 2019 18:34:51: 54000000 INFO @ Sun, 02 Jun 2019 18:34:55: 54000000 INFO @ Sun, 02 Jun 2019 18:34:57: 55000000 INFO @ Sun, 02 Jun 2019 18:35:02: 55000000 INFO @ Sun, 02 Jun 2019 18:35:04: 56000000 INFO @ Sun, 02 Jun 2019 18:35:08: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 18:35:08: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 18:35:08: #1 total tags in treatment: 26406720 INFO @ Sun, 02 Jun 2019 18:35:08: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 18:35:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 18:35:08: 56000000 INFO @ Sun, 02 Jun 2019 18:35:09: #1 tags after filtering in treatment: 23434359 INFO @ Sun, 02 Jun 2019 18:35:09: #1 Redundant rate of treatment: 0.11 INFO @ Sun, 02 Jun 2019 18:35:09: #1 finished! INFO @ Sun, 02 Jun 2019 18:35:09: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 18:35:09: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 18:35:10: #2 number of paired peaks: 210 WARNING @ Sun, 02 Jun 2019 18:35:10: Fewer paired peaks (210) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 210 pairs to build model! INFO @ Sun, 02 Jun 2019 18:35:10: start model_add_line... INFO @ Sun, 02 Jun 2019 18:35:11: start X-correlation... INFO @ Sun, 02 Jun 2019 18:35:11: end of X-cor INFO @ Sun, 02 Jun 2019 18:35:11: #2 finished! INFO @ Sun, 02 Jun 2019 18:35:11: #2 predicted fragment length is 90 bps INFO @ Sun, 02 Jun 2019 18:35:11: #2 alternative fragment length(s) may be 2,54,78,83,90 bps INFO @ Sun, 02 Jun 2019 18:35:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.20_model.r WARNING @ Sun, 02 Jun 2019 18:35:11: #2 Since the d (90) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 18:35:11: #2 You may need to consider one of the other alternative d(s): 2,54,78,83,90 WARNING @ Sun, 02 Jun 2019 18:35:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 18:35:11: #3 Call peaks... INFO @ Sun, 02 Jun 2019 18:35:11: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 18:35:13: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 18:35:13: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 18:35:13: #1 total tags in treatment: 26406720 INFO @ Sun, 02 Jun 2019 18:35:13: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 18:35:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 18:35:13: #1 tags after filtering in treatment: 23434359 INFO @ Sun, 02 Jun 2019 18:35:13: #1 Redundant rate of treatment: 0.11 INFO @ Sun, 02 Jun 2019 18:35:13: #1 finished! INFO @ Sun, 02 Jun 2019 18:35:13: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 18:35:13: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 18:35:15: #2 number of paired peaks: 210 WARNING @ Sun, 02 Jun 2019 18:35:15: Fewer paired peaks (210) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 210 pairs to build model! INFO @ Sun, 02 Jun 2019 18:35:15: start model_add_line... INFO @ Sun, 02 Jun 2019 18:35:15: start X-correlation... INFO @ Sun, 02 Jun 2019 18:35:15: end of X-cor INFO @ Sun, 02 Jun 2019 18:35:15: #2 finished! INFO @ Sun, 02 Jun 2019 18:35:15: #2 predicted fragment length is 90 bps INFO @ Sun, 02 Jun 2019 18:35:15: #2 alternative fragment length(s) may be 2,54,78,83,90 bps INFO @ Sun, 02 Jun 2019 18:35:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.10_model.r WARNING @ Sun, 02 Jun 2019 18:35:15: #2 Since the d (90) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 18:35:15: #2 You may need to consider one of the other alternative d(s): 2,54,78,83,90 WARNING @ Sun, 02 Jun 2019 18:35:15: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 18:35:15: #3 Call peaks... INFO @ Sun, 02 Jun 2019 18:35:15: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 18:35:21: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 18:35:44: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.05_peaks.xls INFO @ Sun, 02 Jun 2019 18:35:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.05_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 18:35:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.05_summits.bed INFO @ Sun, 02 Jun 2019 18:35:44: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (554 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 18:36:01: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 18:36:06: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 18:36:24: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.20_peaks.xls INFO @ Sun, 02 Jun 2019 18:36:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.20_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 18:36:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.20_summits.bed INFO @ Sun, 02 Jun 2019 18:36:24: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (218 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 18:36:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.10_peaks.xls INFO @ Sun, 02 Jun 2019 18:36:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.10_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 18:36:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX2978700/SRX2978700.10_summits.bed INFO @ Sun, 02 Jun 2019 18:36:28: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (383 records, 4 fields): 2 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。