Job ID = 11170817 sra ファイルのダウンロード中... Completed: 1458474K bytes transferred in 180 seconds (66169K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 50760011 spots for /home/okishinya/chipatlas/results/ce10/SRX2973382/SRR5786987.sra Written 50760011 spots for /home/okishinya/chipatlas/results/ce10/SRX2973382/SRR5786987.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:20:32 50760011 reads; of these: 50760011 (100.00%) were unpaired; of these: 1385705 (2.73%) aligned 0 times 41652569 (82.06%) aligned exactly 1 time 7721737 (15.21%) aligned >1 times 97.27% overall alignment rate Time searching: 00:20:32 Overall time: 00:20:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 9879671 / 49374306 = 0.2001 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 12:04:11: # Command line: callpeak -t SRX2973382.bam -f BAM -g ce -n SRX2973382.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2973382.05 # format = BAM # ChIP-seq file = ['SRX2973382.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:04:11: # Command line: callpeak -t SRX2973382.bam -f BAM -g ce -n SRX2973382.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2973382.20 # format = BAM # ChIP-seq file = ['SRX2973382.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:04:11: # Command line: callpeak -t SRX2973382.bam -f BAM -g ce -n SRX2973382.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2973382.10 # format = BAM # ChIP-seq file = ['SRX2973382.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:04:11: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:04:11: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:04:11: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:04:11: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:04:11: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:04:11: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:04:19: 1000000 INFO @ Sat, 08 Sep 2018 12:04:19: 1000000 INFO @ Sat, 08 Sep 2018 12:04:19: 1000000 INFO @ Sat, 08 Sep 2018 12:04:27: 2000000 INFO @ Sat, 08 Sep 2018 12:04:27: 2000000 INFO @ Sat, 08 Sep 2018 12:04:27: 2000000 INFO @ Sat, 08 Sep 2018 12:04:34: 3000000 INFO @ Sat, 08 Sep 2018 12:04:35: 3000000 INFO @ Sat, 08 Sep 2018 12:04:35: 3000000 INFO @ Sat, 08 Sep 2018 12:04:42: 4000000 INFO @ Sat, 08 Sep 2018 12:04:43: 4000000 INFO @ Sat, 08 Sep 2018 12:04:43: 4000000 INFO @ Sat, 08 Sep 2018 12:04:50: 5000000 INFO @ Sat, 08 Sep 2018 12:04:51: 5000000 INFO @ Sat, 08 Sep 2018 12:04:51: 5000000 INFO @ Sat, 08 Sep 2018 12:04:58: 6000000 INFO @ Sat, 08 Sep 2018 12:04:59: 6000000 INFO @ Sat, 08 Sep 2018 12:04:59: 6000000 INFO @ Sat, 08 Sep 2018 12:05:05: 7000000 INFO @ Sat, 08 Sep 2018 12:05:07: 7000000 INFO @ Sat, 08 Sep 2018 12:05:07: 7000000 INFO @ Sat, 08 Sep 2018 12:05:13: 8000000 INFO @ Sat, 08 Sep 2018 12:05:14: 8000000 INFO @ Sat, 08 Sep 2018 12:05:14: 8000000 INFO @ Sat, 08 Sep 2018 12:05:21: 9000000 INFO @ Sat, 08 Sep 2018 12:05:22: 9000000 INFO @ Sat, 08 Sep 2018 12:05:22: 9000000 INFO @ Sat, 08 Sep 2018 12:05:29: 10000000 INFO @ Sat, 08 Sep 2018 12:05:30: 10000000 INFO @ Sat, 08 Sep 2018 12:05:30: 10000000 INFO @ Sat, 08 Sep 2018 12:05:37: 11000000 INFO @ Sat, 08 Sep 2018 12:05:38: 11000000 INFO @ Sat, 08 Sep 2018 12:05:38: 11000000 INFO @ Sat, 08 Sep 2018 12:05:45: 12000000 INFO @ Sat, 08 Sep 2018 12:05:45: 12000000 INFO @ Sat, 08 Sep 2018 12:05:45: 12000000 INFO @ Sat, 08 Sep 2018 12:05:53: 13000000 INFO @ Sat, 08 Sep 2018 12:05:53: 13000000 INFO @ Sat, 08 Sep 2018 12:05:53: 13000000 INFO @ Sat, 08 Sep 2018 12:06:01: 14000000 INFO @ Sat, 08 Sep 2018 12:06:01: 14000000 INFO @ Sat, 08 Sep 2018 12:06:01: 14000000 INFO @ Sat, 08 Sep 2018 12:06:08: 15000000 INFO @ Sat, 08 Sep 2018 12:06:09: 15000000 INFO @ Sat, 08 Sep 2018 12:06:09: 15000000 INFO @ Sat, 08 Sep 2018 12:06:16: 16000000 INFO @ Sat, 08 Sep 2018 12:06:16: 16000000 INFO @ Sat, 08 Sep 2018 12:06:16: 16000000 INFO @ Sat, 08 Sep 2018 12:06:24: 17000000 INFO @ Sat, 08 Sep 2018 12:06:24: 17000000 INFO @ Sat, 08 Sep 2018 12:06:24: 17000000 INFO @ Sat, 08 Sep 2018 12:06:32: 18000000 INFO @ Sat, 08 Sep 2018 12:06:32: 18000000 INFO @ Sat, 08 Sep 2018 12:06:32: 18000000 INFO @ Sat, 08 Sep 2018 12:06:40: 19000000 INFO @ Sat, 08 Sep 2018 12:06:40: 19000000 INFO @ Sat, 08 Sep 2018 12:06:40: 19000000 INFO @ Sat, 08 Sep 2018 12:06:48: 20000000 INFO @ Sat, 08 Sep 2018 12:06:48: 20000000 INFO @ Sat, 08 Sep 2018 12:06:48: 20000000 INFO @ Sat, 08 Sep 2018 12:06:55: 21000000 INFO @ Sat, 08 Sep 2018 12:06:55: 21000000 INFO @ Sat, 08 Sep 2018 12:06:56: 21000000 INFO @ Sat, 08 Sep 2018 12:07:03: 22000000 INFO @ Sat, 08 Sep 2018 12:07:03: 22000000 INFO @ Sat, 08 Sep 2018 12:07:04: 22000000 INFO @ Sat, 08 Sep 2018 12:07:11: 23000000 INFO @ Sat, 08 Sep 2018 12:07:11: 23000000 INFO @ Sat, 08 Sep 2018 12:07:12: 23000000 INFO @ Sat, 08 Sep 2018 12:07:19: 24000000 INFO @ Sat, 08 Sep 2018 12:07:19: 24000000 INFO @ Sat, 08 Sep 2018 12:07:20: 24000000 INFO @ Sat, 08 Sep 2018 12:07:26: 25000000 INFO @ Sat, 08 Sep 2018 12:07:27: 25000000 INFO @ Sat, 08 Sep 2018 12:07:27: 25000000 INFO @ Sat, 08 Sep 2018 12:07:34: 26000000 INFO @ Sat, 08 Sep 2018 12:07:35: 26000000 INFO @ Sat, 08 Sep 2018 12:07:35: 26000000 INFO @ Sat, 08 Sep 2018 12:07:42: 27000000 INFO @ Sat, 08 Sep 2018 12:07:43: 27000000 INFO @ Sat, 08 Sep 2018 12:07:43: 27000000 INFO @ Sat, 08 Sep 2018 12:07:50: 28000000 INFO @ Sat, 08 Sep 2018 12:07:51: 28000000 INFO @ Sat, 08 Sep 2018 12:07:51: 28000000 INFO @ Sat, 08 Sep 2018 12:07:58: 29000000 INFO @ Sat, 08 Sep 2018 12:07:59: 29000000 INFO @ Sat, 08 Sep 2018 12:07:59: 29000000 INFO @ Sat, 08 Sep 2018 12:08:06: 30000000 INFO @ Sat, 08 Sep 2018 12:08:07: 30000000 INFO @ Sat, 08 Sep 2018 12:08:07: 30000000 INFO @ Sat, 08 Sep 2018 12:08:14: 31000000 INFO @ Sat, 08 Sep 2018 12:08:15: 31000000 INFO @ Sat, 08 Sep 2018 12:08:15: 31000000 INFO @ Sat, 08 Sep 2018 12:08:22: 32000000 INFO @ Sat, 08 Sep 2018 12:08:23: 32000000 INFO @ Sat, 08 Sep 2018 12:08:24: 32000000 INFO @ Sat, 08 Sep 2018 12:08:30: 33000000 INFO @ Sat, 08 Sep 2018 12:08:31: 33000000 INFO @ Sat, 08 Sep 2018 12:08:32: 33000000 INFO @ Sat, 08 Sep 2018 12:08:38: 34000000 INFO @ Sat, 08 Sep 2018 12:08:39: 34000000 INFO @ Sat, 08 Sep 2018 12:08:40: 34000000 INFO @ Sat, 08 Sep 2018 12:08:46: 35000000 INFO @ Sat, 08 Sep 2018 12:08:46: 35000000 INFO @ Sat, 08 Sep 2018 12:08:48: 35000000 INFO @ Sat, 08 Sep 2018 12:08:54: 36000000 INFO @ Sat, 08 Sep 2018 12:08:55: 36000000 INFO @ Sat, 08 Sep 2018 12:08:56: 36000000 INFO @ Sat, 08 Sep 2018 12:09:02: 37000000 INFO @ Sat, 08 Sep 2018 12:09:03: 37000000 INFO @ Sat, 08 Sep 2018 12:09:04: 37000000 INFO @ Sat, 08 Sep 2018 12:09:10: 38000000 INFO @ Sat, 08 Sep 2018 12:09:11: 38000000 INFO @ Sat, 08 Sep 2018 12:09:12: 38000000 INFO @ Sat, 08 Sep 2018 12:09:18: 39000000 INFO @ Sat, 08 Sep 2018 12:09:19: 39000000 INFO @ Sat, 08 Sep 2018 12:09:21: 39000000 INFO @ Sat, 08 Sep 2018 12:09:22: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:09:22: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:09:22: #1 total tags in treatment: 39494635 INFO @ Sat, 08 Sep 2018 12:09:22: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:09:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:09:23: #1 tags after filtering in treatment: 39494635 INFO @ Sat, 08 Sep 2018 12:09:23: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:09:23: #1 finished! INFO @ Sat, 08 Sep 2018 12:09:23: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:09:23: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:09:23: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:09:23: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:09:23: #1 total tags in treatment: 39494635 INFO @ Sat, 08 Sep 2018 12:09:23: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:09:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:09:24: #1 tags after filtering in treatment: 39494635 INFO @ Sat, 08 Sep 2018 12:09:24: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:09:24: #1 finished! INFO @ Sat, 08 Sep 2018 12:09:24: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:09:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:09:25: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:09:25: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:09:25: #1 total tags in treatment: 39494635 INFO @ Sat, 08 Sep 2018 12:09:25: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:09:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:09:25: #1 tags after filtering in treatment: 39494635 INFO @ Sat, 08 Sep 2018 12:09:25: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:09:25: #1 finished! INFO @ Sat, 08 Sep 2018 12:09:25: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:09:25: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:09:25: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:09:25: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:09:25: Process for pairing-model is terminated! cat: SRX2973382.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2973382.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973382.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973382.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 12:09:26: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:09:26: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:09:26: Process for pairing-model is terminated! cat: SRX2973382.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2973382.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973382.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973382.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 12:09:28: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:09:28: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:09:28: Process for pairing-model is terminated! cat: SRX2973382.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 5 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2973382.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973382.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973382.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。