Job ID = 9157378 sra ファイルのダウンロード中... Completed: 4293429K bytes transferred in 35 seconds (985616K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 98384435 spots for /home/okishinya/chipatlas/results/ce10/SRX1674088/SRR3320134.sra Written 98384435 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:51:27 98384435 reads; of these: 98384435 (100.00%) were unpaired; of these: 11007235 (11.19%) aligned 0 times 73674778 (74.88%) aligned exactly 1 time 13702422 (13.93%) aligned >1 times 88.81% overall alignment rate Time searching: 00:51:27 Overall time: 00:51:27 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 42225945 / 87377200 = 0.4833 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Tue, 27 Jun 2017 12:55:26: # Command line: callpeak -t SRX1674088.bam -f BAM -g ce -n SRX1674088.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1674088.10 # format = BAM # ChIP-seq file = ['SRX1674088.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 12:55:26: #1 read tag files... INFO @ Tue, 27 Jun 2017 12:55:26: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 12:55:26: # Command line: callpeak -t SRX1674088.bam -f BAM -g ce -n SRX1674088.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1674088.20 # format = BAM # ChIP-seq file = ['SRX1674088.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 12:55:26: #1 read tag files... INFO @ Tue, 27 Jun 2017 12:55:26: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 12:55:26: # Command line: callpeak -t SRX1674088.bam -f BAM -g ce -n SRX1674088.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1674088.05 # format = BAM # ChIP-seq file = ['SRX1674088.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 12:55:26: #1 read tag files... INFO @ Tue, 27 Jun 2017 12:55:26: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 12:55:37: 1000000 INFO @ Tue, 27 Jun 2017 12:55:37: 1000000 INFO @ Tue, 27 Jun 2017 12:55:37: 1000000 INFO @ Tue, 27 Jun 2017 12:55:48: 2000000 INFO @ Tue, 27 Jun 2017 12:55:48: 2000000 INFO @ Tue, 27 Jun 2017 12:55:48: 2000000 INFO @ Tue, 27 Jun 2017 12:55:58: 3000000 INFO @ Tue, 27 Jun 2017 12:55:58: 3000000 INFO @ Tue, 27 Jun 2017 12:55:59: 3000000 INFO @ Tue, 27 Jun 2017 12:56:09: 4000000 INFO @ Tue, 27 Jun 2017 12:56:09: 4000000 INFO @ Tue, 27 Jun 2017 12:56:09: 4000000 INFO @ Tue, 27 Jun 2017 12:56:18: 5000000 INFO @ Tue, 27 Jun 2017 12:56:20: 5000000 INFO @ Tue, 27 Jun 2017 12:56:20: 5000000 INFO @ Tue, 27 Jun 2017 12:56:26: 6000000 INFO @ Tue, 27 Jun 2017 12:56:29: 6000000 INFO @ Tue, 27 Jun 2017 12:56:29: 6000000 INFO @ Tue, 27 Jun 2017 12:56:35: 7000000 INFO @ Tue, 27 Jun 2017 12:56:38: 7000000 INFO @ Tue, 27 Jun 2017 12:56:38: 7000000 INFO @ Tue, 27 Jun 2017 12:56:43: 8000000 INFO @ Tue, 27 Jun 2017 12:56:47: 8000000 INFO @ Tue, 27 Jun 2017 12:56:47: 8000000 INFO @ Tue, 27 Jun 2017 12:56:52: 9000000 INFO @ Tue, 27 Jun 2017 12:56:56: 9000000 INFO @ Tue, 27 Jun 2017 12:56:56: 9000000 INFO @ Tue, 27 Jun 2017 12:57:00: 10000000 INFO @ Tue, 27 Jun 2017 12:57:05: 10000000 INFO @ Tue, 27 Jun 2017 12:57:05: 10000000 INFO @ Tue, 27 Jun 2017 12:57:09: 11000000 INFO @ Tue, 27 Jun 2017 12:57:14: 11000000 INFO @ Tue, 27 Jun 2017 12:57:14: 11000000 INFO @ Tue, 27 Jun 2017 12:57:17: 12000000 INFO @ Tue, 27 Jun 2017 12:57:23: 12000000 INFO @ Tue, 27 Jun 2017 12:57:23: 12000000 INFO @ Tue, 27 Jun 2017 12:57:26: 13000000 INFO @ Tue, 27 Jun 2017 12:57:33: 13000000 INFO @ Tue, 27 Jun 2017 12:57:33: 13000000 INFO @ Tue, 27 Jun 2017 12:57:35: 14000000 INFO @ Tue, 27 Jun 2017 12:57:42: 14000000 INFO @ Tue, 27 Jun 2017 12:57:43: 14000000 INFO @ Tue, 27 Jun 2017 12:57:44: 15000000 INFO @ Tue, 27 Jun 2017 12:57:52: 15000000 INFO @ Tue, 27 Jun 2017 12:57:53: 16000000 INFO @ Tue, 27 Jun 2017 12:57:54: 15000000 INFO @ Tue, 27 Jun 2017 12:58:01: 17000000 INFO @ Tue, 27 Jun 2017 12:58:02: 16000000 INFO @ Tue, 27 Jun 2017 12:58:04: 16000000 INFO @ Tue, 27 Jun 2017 12:58:10: 18000000 INFO @ Tue, 27 Jun 2017 12:58:12: 17000000 INFO @ Tue, 27 Jun 2017 12:58:13: 17000000 INFO @ Tue, 27 Jun 2017 12:58:18: 19000000 INFO @ Tue, 27 Jun 2017 12:58:22: 18000000 INFO @ Tue, 27 Jun 2017 12:58:24: 18000000 INFO @ Tue, 27 Jun 2017 12:58:27: 20000000 INFO @ Tue, 27 Jun 2017 12:58:32: 19000000 INFO @ Tue, 27 Jun 2017 12:58:34: 19000000 INFO @ Tue, 27 Jun 2017 12:58:36: 21000000 INFO @ Tue, 27 Jun 2017 12:58:43: 20000000 INFO @ Tue, 27 Jun 2017 12:58:47: 20000000 INFO @ Tue, 27 Jun 2017 12:58:48: 22000000 INFO @ Tue, 27 Jun 2017 12:58:54: 21000000 INFO @ Tue, 27 Jun 2017 12:58:59: 23000000 INFO @ Tue, 27 Jun 2017 12:58:59: 21000000 INFO @ Tue, 27 Jun 2017 12:59:05: 22000000 INFO @ Tue, 27 Jun 2017 12:59:09: 24000000 INFO @ Tue, 27 Jun 2017 12:59:12: 22000000 INFO @ Tue, 27 Jun 2017 12:59:16: 23000000 INFO @ Tue, 27 Jun 2017 12:59:20: 25000000 INFO @ Tue, 27 Jun 2017 12:59:24: 23000000 INFO @ Tue, 27 Jun 2017 12:59:27: 24000000 INFO @ Tue, 27 Jun 2017 12:59:30: 26000000 INFO @ Tue, 27 Jun 2017 12:59:36: 24000000 INFO @ Tue, 27 Jun 2017 12:59:38: 25000000 INFO @ Tue, 27 Jun 2017 12:59:41: 27000000 INFO @ Tue, 27 Jun 2017 12:59:48: 25000000 INFO @ Tue, 27 Jun 2017 12:59:49: 26000000 INFO @ Tue, 27 Jun 2017 12:59:51: 28000000 INFO @ Tue, 27 Jun 2017 13:00:00: 26000000 INFO @ Tue, 27 Jun 2017 13:00:00: 27000000 INFO @ Tue, 27 Jun 2017 13:00:02: 29000000 INFO @ Tue, 27 Jun 2017 13:00:11: 28000000 INFO @ Tue, 27 Jun 2017 13:00:12: 27000000 INFO @ Tue, 27 Jun 2017 13:00:12: 30000000 INFO @ Tue, 27 Jun 2017 13:00:21: 29000000 INFO @ Tue, 27 Jun 2017 13:00:23: 31000000 INFO @ Tue, 27 Jun 2017 13:00:24: 28000000 INFO @ Tue, 27 Jun 2017 13:00:32: 30000000 INFO @ Tue, 27 Jun 2017 13:00:33: 32000000 INFO @ Tue, 27 Jun 2017 13:00:36: 29000000 INFO @ Tue, 27 Jun 2017 13:00:43: 31000000 INFO @ Tue, 27 Jun 2017 13:00:43: 33000000 INFO @ Tue, 27 Jun 2017 13:00:48: 30000000 INFO @ Tue, 27 Jun 2017 13:00:53: 34000000 INFO @ Tue, 27 Jun 2017 13:00:54: 32000000 INFO @ Tue, 27 Jun 2017 13:01:01: 31000000 INFO @ Tue, 27 Jun 2017 13:01:02: 35000000 INFO @ Tue, 27 Jun 2017 13:01:05: 33000000 INFO @ Tue, 27 Jun 2017 13:01:11: 36000000 INFO @ Tue, 27 Jun 2017 13:01:14: 32000000 INFO @ Tue, 27 Jun 2017 13:01:17: 34000000 INFO @ Tue, 27 Jun 2017 13:01:21: 37000000 INFO @ Tue, 27 Jun 2017 13:01:28: 33000000 INFO @ Tue, 27 Jun 2017 13:01:28: 35000000 INFO @ Tue, 27 Jun 2017 13:01:33: 38000000 INFO @ Tue, 27 Jun 2017 13:01:40: 36000000 INFO @ Tue, 27 Jun 2017 13:01:42: 34000000 INFO @ Tue, 27 Jun 2017 13:01:44: 39000000 INFO @ Tue, 27 Jun 2017 13:01:51: 37000000 INFO @ Tue, 27 Jun 2017 13:01:56: 35000000 INFO @ Tue, 27 Jun 2017 13:01:56: 40000000 INFO @ Tue, 27 Jun 2017 13:02:03: 38000000 INFO @ Tue, 27 Jun 2017 13:02:08: 41000000 INFO @ Tue, 27 Jun 2017 13:02:09: 36000000 INFO @ Tue, 27 Jun 2017 13:02:16: 39000000 INFO @ Tue, 27 Jun 2017 13:02:20: 42000000 INFO @ Tue, 27 Jun 2017 13:02:23: 37000000 INFO @ Tue, 27 Jun 2017 13:02:28: 40000000 INFO @ Tue, 27 Jun 2017 13:02:34: 43000000 INFO @ Tue, 27 Jun 2017 13:02:38: 38000000 INFO @ Tue, 27 Jun 2017 13:02:40: 41000000 INFO @ Tue, 27 Jun 2017 13:02:48: 44000000 INFO @ Tue, 27 Jun 2017 13:02:52: 42000000 INFO @ Tue, 27 Jun 2017 13:02:53: 39000000 INFO @ Tue, 27 Jun 2017 13:03:00: 45000000 INFO @ Tue, 27 Jun 2017 13:03:02: #1 tag size is determined as 101 bps INFO @ Tue, 27 Jun 2017 13:03:02: #1 tag size = 101 INFO @ Tue, 27 Jun 2017 13:03:02: #1 total tags in treatment: 45151255 INFO @ Tue, 27 Jun 2017 13:03:02: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 13:03:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 13:03:03: #1 tags after filtering in treatment: 45151255 INFO @ Tue, 27 Jun 2017 13:03:03: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 13:03:03: #1 finished! INFO @ Tue, 27 Jun 2017 13:03:03: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 13:03:03: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 13:03:04: 43000000 INFO @ Tue, 27 Jun 2017 13:03:06: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 13:03:06: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 13:03:06: Process for pairing-model is terminated! cat: SRX1674088.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674088.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674088.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674088.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 13:03:07: 40000000 INFO @ Tue, 27 Jun 2017 13:03:16: 44000000 INFO @ Tue, 27 Jun 2017 13:03:22: 41000000 INFO @ Tue, 27 Jun 2017 13:03:28: 45000000 INFO @ Tue, 27 Jun 2017 13:03:29: #1 tag size is determined as 101 bps INFO @ Tue, 27 Jun 2017 13:03:29: #1 tag size = 101 INFO @ Tue, 27 Jun 2017 13:03:29: #1 total tags in treatment: 45151255 INFO @ Tue, 27 Jun 2017 13:03:29: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 13:03:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 13:03:30: #1 tags after filtering in treatment: 45151255 INFO @ Tue, 27 Jun 2017 13:03:30: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 13:03:30: #1 finished! INFO @ Tue, 27 Jun 2017 13:03:30: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 13:03:30: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 13:03:33: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 13:03:33: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 13:03:33: Process for pairing-model is terminated! cat: SRX1674088.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674088.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674088.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674088.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 13:03:35: 42000000 INFO @ Tue, 27 Jun 2017 13:03:47: 43000000 INFO @ Tue, 27 Jun 2017 13:03:58: 44000000 INFO @ Tue, 27 Jun 2017 13:04:10: 45000000 INFO @ Tue, 27 Jun 2017 13:04:12: #1 tag size is determined as 101 bps INFO @ Tue, 27 Jun 2017 13:04:12: #1 tag size = 101 INFO @ Tue, 27 Jun 2017 13:04:12: #1 total tags in treatment: 45151255 INFO @ Tue, 27 Jun 2017 13:04:12: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 13:04:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 13:04:13: #1 tags after filtering in treatment: 45151255 INFO @ Tue, 27 Jun 2017 13:04:13: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 13:04:13: #1 finished! INFO @ Tue, 27 Jun 2017 13:04:13: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 13:04:13: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 13:04:16: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 13:04:16: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 13:04:16: Process for pairing-model is terminated! cat: SRX1674088.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674088.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674088.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674088.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。