5'-end sequences of full-length cDNA clones generated from the budding yeast full-length cDNA library by the vector-capping method and the sequence quality score generated by the Phred software.
| Data name | README |
| Description of data contents | HTML file to describe "Budding yeast cDNA sequencing project" data. |
| File | README_e.html(English) |
| Data name | 5'-end sequences of budding yeast full-length cDNA clones and quality scores |
| Description of data contents |
5'-end sequences of full-length cDNA clones generated from the budding yeast full-length cDNA library by the vector-capping method, the sequence quality score generated by the Phred software, and links to SGD, dbEST and UCSC Genome Browser are provided. Links to the SGD are found only in the cDNAs mapped to the genome. Links to dbEST and UCSC Genome Browser are found only in the cDNAs possessing genuine 5'-end. The number of links to SGD is 51,027, the number of links to dbEST and UCSC Genome Browser is 31,847, and the total number of cDNAs is 83,707. The data are given in a CSV format text file. |
| File | yeast_seq_qual.zip (59.9MB) |
| Data item | Description |
|---|---|
| Clone ID | Clone ID, and name in the SGD. |
| Link to SGD | Link to SGD (Saccharomyces Genome Database, http://www.yeastgenome.org/) based on the clone ID of the cDNAs mapped to the genome. The link is found in the TogoDB edition, and only Clone ID is found in the archive file. |
| Link to dbEST | Link to NCBI's dbEST based on accession of the GenBank for the cDNAs possessing genuine 5'-end. The link is found in the TogoDB edition, and the archive file has accession only. |
| Link to UCSC Genome Browser | Link to the UCSC Genome Browser based on accession of the GenBank for the cDNAs possessing genuine 5'-end. The link is found in the TogoDB edition, and the archive file has accession only. |
| Sequence | 5'-end sequence data of budding yeast full-length cDNA clones. FASTA format. |
| Quality | Phred's quality score |
| Data name | 5'-end sequences of budding yeast full-length cDNA clones |
| Description of data contents |
cDNA sequence data of budding yeast. Sequence data in the FASTA format, one file for each cDNA, and compressed to a single file in the tar.gz format. 83,706 entries. |
| File | Sequence.tar.gz (21MB) |
| Data name | cDNA sequence quality data |
| Description of data contents |
Phred's quality score. PHD format, one file to a single cDNA data, and compressed to a single file in the tar.gz format. 83,706 entries. |
| File | Quality.tar.gz (45MB) |
| Data name | Vector sequences |
| Description of data contents |
Vector sequences used for sequencing. Multi FASTA format. 7 entries. |
| File | vector_seqeunce.fasta.gz (1KB) |
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GSFS - CB-06, Transdisciplinary Sciences, The University of Tokyo
5-1-5 Kashiwanoha, Kashiwa-shi, Chiba-ken
277-8561
Tel: +81-4-7136-3989
FAX: +81-4-7136-3979
E-mail : ito[at]bi[dot]s[dot].u-tokyo[dot]ac[dot]jp
You can freely provide links to all contents in this database. But, contents might be changed without notice.
| Date | Update contents |
| 2010/03/29 | Budding yeast cDNA sequencing project English archive site is opened. |
| 2006/11/14 | Budding yeast cDNA sequencing project(http://itolab.cb.k.u-tokyo.ac.jp/GCap/) is released. |
GSFS - CB-06, Transdisciplinary Sciences, The University of Tokyo
5-1-5 Kashiwanoha, Kashiwa-shi, Chiba-ken
277-8561
Tel: +81-4-7136-3989
FAX: +81-4-7136-3979
E-mail : ito[at]bi[dot]s[dot].u-tokyo[dot]ac[dot]jp