Q-TARO
2014/10/20Web Site: http://qtaro.abr.affrc.go.jp/
HTTPS Site: https://dbarchive.biosciencedbc.jp/data/qtaro/
The database of Rice QTL information extracted from published research papers.
README Content
1. Database Component
2. Data Description
2.1 README
| Data name | README |
| Description of data contents | HTML file to describe "Q-TARO" data. |
| File | README_e.html(English) |
2.2 QTL Information Table
| Data name | QTL Information Table |
| Description of data contents | 1051 QTLs extracted from 463 reports are recorded as representative QTLs (As of March 31, 2008). |
| File | qtaro_sjis.zip (89 KB) qtaro_utf8.zip (89 KB) |
Data items are the following:
| Data item | Description |
|---|---|
| id | ID number of QTL |
| QTL/Gene | Name of QTL |
| Major category | Major category of quantitative character |
| Category of object character | Category of object character |
| Character | Character |
| Marker | Type of marker |
| No. of marker for position determination | Number of the markers used for position determination |
| Chr | Chromosome number |
| Genome start | QTL start position on the genome |
| Genome end | QTL end position on the genome |
| Mapping method | Mapping method |
| Population | Population of plants |
| No. of plants | Number of plants |
| LOD | LOD score |
| Parent A | Parent A |
| Parent B | Parent B |
| Direction (Parent) | Direction (Parent) |
| a) Physical | Marker of physical mapping |
| b) Fine1; interval | Flanking marker of fine mapping A |
| b) Fine2; interval | Flanking marker of fine mapping B |
| b) Fine3; co-segregated | Co-segregated marker of fine mapping |
| c) Interval1; interval | Flanking marker of interval mapping A |
| c) Interval2; interval | Flanking marker of interval mapping B |
| c) Interval3; co-segregated | Co-segregated marker of interval mapping |
| d) Co-segregated | Co-segregated marker |
| Explained variance | Explained variance |
| Additive effect | Additive effect |
| Year | Year the reference was published |
| Reference source | Search method of the reference. Journals were searched within the following websites. - Jsa (Jstage) - Pha (PubMed, HighWire) - RGN (Rice Genetics Newsletter) |
| Reference no. | Number assigned to the reference serially within each reference source |
| Reference | Reference |
| Reference location | URL of the reference |
3. License
You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.
The license for this database is specified in the Creative Commons Attribution-Share Alike 2.1 Japan.
If you use data from this database, please be sure attribute this database as follows: "Q-TARO © Junichi Yonemaru (National Institute of Agrobiological Sciences) licensed under CC Attribution-Share Alike 2.1 Japan".
The summary of the Creative Commons Attribution-Share Alike 2.1 Japan is found here.
With regard to this database, you are licensed to:
- freely access part or whole of this database, and acquire data;
- freely redistribute part or whole of the data from this database; and
- freely create and distribute database and other derivative works based on part or whole of the data from this database,
under the license, as long as you comply with the following conditions:
- You must attribute this database in the manner specified by the author or licensor when distributing part or whole of this database or any derivative work.
- You must distribute any derivative work based on part or whole of the data from this database under the license.
- You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the license.
2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
National Institute of Agrobiological Sciences
Rice Applied Genomics Research Unit
Junichi Yonemaru
E-mail: yonemaru[at]affrc[dot]go[dot]jp
4. Update History
| Date | Update contents |
|---|---|
| 2014/10/20 | The URL of the portal site is changed. |
| 2013/12/17 | The URL of the portal site is changed. |
| 2013/12/13 | Q-TARO English archive site is opened. |
| 2009/11/15 | Q-TARO (http://qtaro.abr.affrc.go.jp/) is opened. |
5. Literature
Jun-ichi Yonemaru, Toshio Yamamoto, Shuichi Fukuoka, Yusaku Uga, Kiyosumi Hori, Masahiro YanoQ-TARO: QTL Annotation Rice Online Database
Rice, September 2010, Volume 3, Issue 2-3, pp 194-203
6. Contact address
When you have any question about "Q-TARO", contact the following:
2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
National Institute of Agrobiological Sciences
Junichi Yonemaru
E-mail: yonemaru[at]affrc[dot]go[dot]jp