Proteins	Positions within proteins	Leading proteins	Protein	Protein names	Gene names	Fasta headers	Localization prob	Score diff	PEP	Score	Delta score	Score for localization	Localization prob Sh-c-flag-1	Score diff Sh-c-flag-1	PEP Sh-c-flag-1	Score Sh-c-flag-1	Localization prob Sh-c-flag-2	Score diff Sh-c-flag-2	PEP Sh-c-flag-2	Score Sh-c-flag-2	Localization prob Sh-c-flag-3	Score diff Sh-c-flag-3	PEP Sh-c-flag-3	Score Sh-c-flag-3	Localization prob Sh-c-G-1	Score diff Sh-c-G-1	PEP Sh-c-G-1	Score Sh-c-G-1	Localization prob Sh-c-G-2	Score diff Sh-c-G-2	PEP Sh-c-G-2	Score Sh-c-G-2	Localization prob Sh-c-G-3	Score diff Sh-c-G-3	PEP Sh-c-G-3	Score Sh-c-G-3	Localization prob Sh-H9-Flag-1	Score diff Sh-H9-Flag-1	PEP Sh-H9-Flag-1	Score Sh-H9-Flag-1	Localization prob Sh-H9-Flag-2	Score diff Sh-H9-Flag-2	PEP Sh-H9-Flag-2	Score Sh-H9-Flag-2	Localization prob Sh-H9-Flag-3	Score diff Sh-H9-Flag-3	PEP Sh-H9-Flag-3	Score Sh-H9-Flag-3	Localization prob Sh-H9-G-1	Score diff Sh-H9-G-1	PEP Sh-H9-G-1	Score Sh-H9-G-1	Localization prob Sh-H9-G-2	Score diff Sh-H9-G-2	PEP Sh-H9-G-2	Score Sh-H9-G-2	Localization prob Sh-H9-G-3	Score diff Sh-H9-G-3	PEP Sh-H9-G-3	Score Sh-H9-G-3	Diagnostic peak	Number of QQTGG (K)	Amino acid	Sequence window	Modification window	Peptide window coverage	QQTGG (K) Probabilities	QQTGG (K) Score diffs	Position in peptide	Charge	Mass error [ppm]	Identification type Sh-c-flag-1	Identification type Sh-c-flag-2	Identification type Sh-c-flag-3	Identification type Sh-c-G-1	Identification type Sh-c-G-2	Identification type Sh-c-G-3	Identification type Sh-H9-Flag-1	Identification type Sh-H9-Flag-2	Identification type Sh-H9-Flag-3	Identification type Sh-H9-G-1	Identification type Sh-H9-G-2	Identification type Sh-H9-G-3	Intensity	Intensity___1	Intensity___2	Intensity___3	Ratio mod/base	Intensity Sh-c-flag-1	Intensity Sh-c-flag-2	Intensity Sh-c-flag-3	Intensity Sh-c-G-1	Intensity Sh-c-G-2	Intensity Sh-c-G-3	Intensity Sh-H9-Flag-1	Intensity Sh-H9-Flag-2	Intensity Sh-H9-Flag-3	Intensity Sh-H9-G-1	Intensity Sh-H9-G-2	Intensity Sh-H9-G-3	Ratio mod/base Sh-c-flag-1	Ratio mod/base Sh-c-flag-2	Ratio mod/base Sh-c-flag-3	Ratio mod/base Sh-c-G-1	Ratio mod/base Sh-c-G-2	Ratio mod/base Sh-c-G-3	Ratio mod/base Sh-H9-Flag-1	Ratio mod/base Sh-H9-Flag-2	Ratio mod/base Sh-H9-Flag-3	Ratio mod/base Sh-H9-G-1	Ratio mod/base Sh-H9-G-2	Ratio mod/base Sh-H9-G-3	Intensity Sh-c-flag-1___1	Intensity Sh-c-flag-1___2	Intensity Sh-c-flag-1___3	Intensity Sh-c-flag-2___1	Intensity Sh-c-flag-2___2	Intensity Sh-c-flag-2___3	Intensity Sh-c-flag-3___1	Intensity Sh-c-flag-3___2	Intensity Sh-c-flag-3___3	Intensity Sh-c-G-1___1	Intensity Sh-c-G-1___2	Intensity Sh-c-G-1___3	Intensity Sh-c-G-2___1	Intensity Sh-c-G-2___2	Intensity Sh-c-G-2___3	Intensity Sh-c-G-3___1	Intensity Sh-c-G-3___2	Intensity Sh-c-G-3___3	Intensity Sh-H9-Flag-1___1	Intensity Sh-H9-Flag-1___2	Intensity Sh-H9-Flag-1___3	Intensity Sh-H9-Flag-2___1	Intensity Sh-H9-Flag-2___2	Intensity Sh-H9-Flag-2___3	Intensity Sh-H9-Flag-3___1	Intensity Sh-H9-Flag-3___2	Intensity Sh-H9-Flag-3___3	Intensity Sh-H9-G-1___1	Intensity Sh-H9-G-1___2	Intensity Sh-H9-G-1___3	Intensity Sh-H9-G-2___1	Intensity Sh-H9-G-2___2	Intensity Sh-H9-G-2___3	Intensity Sh-H9-G-3___1	Intensity Sh-H9-G-3___2	Intensity Sh-H9-G-3___3	Occupancy Sh-c-flag-1	Occupancy ratioSh-c-flag-1	Occupancy error scale Sh-c-flag-1	Occupancy Sh-c-flag-2	Occupancy ratioSh-c-flag-2	Occupancy error scale Sh-c-flag-2	Occupancy Sh-c-flag-3	Occupancy ratioSh-c-flag-3	Occupancy error scale Sh-c-flag-3	Occupancy Sh-c-G-1	Occupancy ratioSh-c-G-1	Occupancy error scale Sh-c-G-1	Occupancy Sh-c-G-2	Occupancy ratioSh-c-G-2	Occupancy error scale Sh-c-G-2	Occupancy Sh-c-G-3	Occupancy ratioSh-c-G-3	Occupancy error scale Sh-c-G-3	Occupancy Sh-H9-Flag-1	Occupancy ratioSh-H9-Flag-1	Occupancy error scale Sh-H9-Flag-1	Occupancy Sh-H9-Flag-2	Occupancy ratioSh-H9-Flag-2	Occupancy error scale Sh-H9-Flag-2	Occupancy Sh-H9-Flag-3	Occupancy ratioSh-H9-Flag-3	Occupancy error scale Sh-H9-Flag-3	Occupancy Sh-H9-G-1	Occupancy ratioSh-H9-G-1	Occupancy error scale Sh-H9-G-1	Occupancy Sh-H9-G-2	Occupancy ratioSh-H9-G-2	Occupancy error scale Sh-H9-G-2	Occupancy Sh-H9-G-3	Occupancy ratioSh-H9-G-3	Occupancy error scale Sh-H9-G-3	Reverse	Potential contaminant	id	Protein group IDs	Positions	Position	Peptide IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best localization evidence ID	Best localization MS/MS ID	Best localization raw file	Best localization scan number	Best score evidence ID	Best score MS/MS ID	Best score raw file	Best score scan number	Best PEP evidence ID	Best PEP MS/MS ID	Best PEP raw file	Best PEP scan number
Q8WWI1;Q8WWI1-3;Q8WWI1-2;H0YDQ3;E9PMP7;H0Y424;E9PMS6;E9PMT2;F8WD26;J3KP06;E9PLH4;Q8WWI1-4	1361;1027;1361;245;975;985;953;1076;1361;1361;1076;1361	Q8WWI1	Q8WWI1	LIM domain only protein 7	LMO7	>sp|Q8WWI1|LMO7_HUMAN LIM domain only protein 7 OS=Homo sapiens GN=LMO7 PE=1 SV=3;>sp|Q8WWI1-3|LMO7_HUMAN Isoform 3 of LIM domain only protein 7 OS=Homo sapiens GN=LMO7;>sp|Q8WWI1-2|LMO7_HUMAN Isoform 2 of LIM domain only protein 7 OS=Homo sapiens GN=LMO7;	1	83.2447	1.60563E-05	83.823	55.468	83.823																									0.999995	53.3452	0.00278338	53.924									1	83.2447	1.60563E-05	83.823									+	1	K	RERKWEQQLQEEQEQKRLQAEAEEQKRPAEE	X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;QQTGG (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXPPPPPPPPPPPPPPXXXXXXXXXXXXXX	KWEQQLQEEQEQK(1)R	K(-83.24)WEQQLQEEQEQK(83.24)R	13	3	3.2316	By matching	By matching	By matching	By matching	By matching	By matching	By MS/MS	By matching	By matching	By MS/MS	By matching	By matching	0	0	0	0	NaN	0	0	0	0	0	0	0	0	0	0	0	0	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN			0	148	1361	1361	1536	1562	14731;14732;14733	15951;15952;15953	14733	15953	Miao_Sh-H9_proteinG_mass3_141226_01	26617	14733	15953	Miao_Sh-H9_proteinG_mass3_141226_01	26617	14733	15953	Miao_Sh-H9_proteinG_mass3_141226_01	26617
O60678;O60678-2	395;333	O60678	O60678	Protein arginine N-methyltransferase 3	PRMT3	>sp|O60678|ANM3_HUMAN Protein arginine N-methyltransferase 3 OS=Homo sapiens GN=PRMT3 PE=1 SV=3;>sp|O60678-2|ANM3_HUMAN Isoform 2 of Protein arginine N-methyltransferase 3 OS=Homo sapiens GN=PRMT3	0.993975	25.095	0.016454	40.616	32.61	40.616													0.993975	25.095	0.016454	40.616																																	+	1	K	IAFWDDVYGFKMSCMKKAVIPEAVVEVLDPK	X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;QQTGG (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX	IAFWDDVYGFK(0.006)MSCMK(0.994)K	IAFWDDVYGFK(-25.1)MSCMK(25.1)K(-40.62)	16	3	-4.3356	By matching	By matching	By matching	By MS/MS	By matching	By matching	By matching	By matching	By matching	By matching	By matching	By matching	0	0	0	0	NaN	0	0	0	0	0	0	0	0	0	0	0	0	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN			1	287	395	395	1248	1269	11664	12708	11664	12708	Miao_Sh-c_proteinG_mass3_141226_01	27617	11664	12708	Miao_Sh-c_proteinG_mass3_141226_01	27617	11664	12708	Miao_Sh-c_proteinG_mass3_141226_01	27617
P25189-2	278	P25189-2	P25189-2			>sp|P25189-2|MYP0_HUMAN Isoform L-MPZ of Myelin protein P0 OS=Homo sapiens GN=MPZ	1	64.82	0.0129293	64.82	7.2882	64.82	0	0		NaN	0	0		NaN					1	43.4185	0.03535	48.284	1	48.9809	0.03419	48.981					0	0		NaN					0	0		NaN					1	64.82	0.0129293	64.82					+	1	K	SAKGPKVMVIEMELRKDEQSPELRPAVKSPS	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;QQTGG (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXPPPPPPPPPXXXXXXX	K(1)DEQSPELR	K(64.82)DEQSPELR	1	4	5.4423	By matching	By matching	By matching	By MS/MS	By MS/MS	By matching	By matching	By matching	By matching	By matching	By MS/MS	By matching	22517	22517	0	0	NaN	1285.5	1187.2	0	4199.4	3499.5	0	1459.3	0	2662.2	0	5610.4	0	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1285.5	0	0	1187.2	0	0	0	0	0	4199.4	0	0	3499.5	0	0	0	0	0	1459.3	0	0	0	0	0	2662.2	0	0	0	0	0	5610.4	0	0	0	0	0	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN			2	407	278	278	1496	1522	14257;14258;14259;14260;14261;14262;14263;14264;14265	15431;15432;15433;15434	14260	15434	Miao_Sh-H9_proteinG_mass3_141226_02	38468	14260	15434	Miao_Sh-H9_proteinG_mass3_141226_02	38468	14260	15434	Miao_Sh-H9_proteinG_mass3_141226_02	38468
Q16206;Q16206-2	494;465	Q16206	Q16206	Ecto-NOX disulfide-thiol exchanger 2;Hydroquinone [NADH] oxidase;Protein disulfide-thiol oxidoreductase	ENOX2	>sp|Q16206|ENOX2_HUMAN Ecto-NOX disulfide-thiol exchanger 2 OS=Homo sapiens GN=ENOX2 PE=1 SV=2;>sp|Q16206-2|ENOX2_HUMAN Isoform 2 of Ecto-NOX disulfide-thiol exchanger 2 OS=Homo sapiens GN=ENOX2	1	62.298	0.00146378	93.162	41.593	62.298																									1	62.298	0.00146378	93.162																					+	1	K	EAELEKLKDDKLQVEKMLENLKEKESCASRL	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;QQTGG (K);Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X	XXXXXXXXXXXPPPPPPPPPPPXXXXXXXXX	LQVEK(1)MLENLK	LQVEK(62.3)MLENLK(-62.3)	5	2	-2.8238	By matching	By matching	By matching	By matching	By matching	By matching	By MS/MS	By matching	By matching	By matching	By matching	By matching	0	0	0	0	NaN	0	0	0	0	0	0	0	0	0	0	0	0	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN			3	584	494	494	1859	1888	17675;17676;17677	19348;19349;19350	17677	19350	Miao_Sh-H9_Flag_mass3_141226_01	18857	17676	19349	Miao_Sh-H9_Flag_mass3_141226_01	18841	17676	19349	Miao_Sh-H9_Flag_mass3_141226_01	18841
Q92901	154	Q92901	Q92901	60S ribosomal protein L3-like	RPL3L	>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3	0.999817	37.3634	0.00290984	66.267	45.828	66.267	0.999817	37.3634	0.00290984	66.267																	0	0		NaN	0.998257	27.5798	0.0146811	55.261																					+	1	K	DTDGKKQLQKDFAAMKKYCKVIRVIVHTQMK	X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;QQTGG (K);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXPPPPPPPPPPPXXXXXXXXXXXXXX	QLQKDFAAMK(1)K	QLQK(-37.36)DFAAMK(37.36)K(-66.27)	10	3	-7.6266	By MS/MS	By matching	By matching	By matching	By matching	By matching	By MS/MS	By matching	By matching	By matching	By matching	By matching	11391	11391	0	0	NaN	4106.7	0	0	0	0	1662.5	5622.1	0	0	0	0	0	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4106.7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1662.5	0	0	5622.1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN			4	628	154	154	2250	2294	21304;21305;21306	23165;23166	21304	23165	Miao_Sh-c_Flag_mass3_141226_01	18801	21304	23165	Miao_Sh-c_Flag_mass3_141226_01	18801	21304	23165	Miao_Sh-c_Flag_mass3_141226_01	18801