The database that hosts a large collection of non-coding transcripts including annotated/non-annotated sequences.
Data name | README |
Description of data contents | HTML file to describe "fRNAdb" data. |
File | README_e.html(English) |
Data name | fRNAdb Summary |
Description of data contents | Functional RNA Database is a human curated catalog of functional RNAs acquired from journal papers. Each RNA is associated to a base sequence, genomic locus, putative secondary structure, citation, etc. |
File | frnadb_summary.zip (46.5 MB) |
Data item | Description |
---|---|
ID | Entry ID |
Accession | Accession |
Description | Description |
SO name | Sequence Ontology |
Organism | Organism |
Xref | Cross Reference |
Length | Sequence Length |
Sequence | Sequence |
Second Structure Thumbnail | Thumbnail of RNA secondary structure image |
Second Structure (PNG) | RNA secondary structure image (PNG) |
Second Structure (PDF) | RNA secondary structure image (PDF) |
Data name | Database Dump |
Description of data contents |
Dump data from database in the original site: |
File | Database Dump (673 MB) |
Data name | Sequence Data |
Description of data contents |
Functional RNA sequence files (FASTA) |
File | Sequence Data (102 MB) |
Data name | Mapping Information |
Description of data contents |
Mapping results on genomes of 4 species |
File | Mapping_Information (120 MB) |
Data name | RNA secondary structure image |
Description of data contents |
RNA secondary structure images |
File | RNA_secondary_structure_image (9.6 GB) |
Data name | Supplementary Data |
Description of data contents |
- xref.zip: Entry ID, Accession, Mapping Position in genome (only Homo sapiens) |
File | Supplementary_Data (3.8 MB) |
You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.
The license for this database is specified in the Creative Commons Attribution-Share Alike 4.0 International.
If you use data from this database, please be sure attribute this database as follows: "fRNAdb © Toutai Mituyama (National Institute of Advanced Industrial Science and Technology) licensed under CC Attribution-Share Alike 4.0 International".
The summary of the Creative Commons Attribution-Share Alike 4.0 International is found here.
With regard to this database, you are licensed to:
under the license, as long as you comply with the following conditions:
Toutai Mituyama
E-mail: mituyama-toutai[at]aist[dot]go[dot]jp
Date | Update contents |
---|---|
2016/03/29 | fRNAdb English archive site is opened. |
2006/12 | fRNdb (http://www.ncrna.org/) is opened. |
Toutai Mituyama
E-mail: mituyama-toutai[at]aist[dot]go[dot]jp