=== tag_cluster_coordinates.tbl.txt.bz2 ##ColumnVariable[id] = CAGE tag cluster id ##ColumnVariable[name] = CAGE cluster name ##ColumnVariable[strand] = strand ##ColumnVariable[chrom] = chromosome where the cluster is located ##ColumnVariable[start] = start position of the cluster ##ColumnVariable[stop] = end position of the cluster ##ColumnVariable[rep_pos] = representative position in the cluster === tag_cluster_expressions.tbl.txt.bz2 ##ColumnVariable[id] = CAGE tag cluster id ##ColumnVariable[library] = CAGE library name ##ColumnVariable[sample] = RNA sample id ##ColumnVariable[raw.single] = tag count for single mappers ##ColumnVariable[norm.single] = normalized tag count (tpm) for single mappers ##ColumnVariable[raw.multi] = tag count for multi mappers ##ColumnVariable[norm.multi] = normalized tag count (tpm) for multi mappers ##ColumnVariable[raw.rescue] = tag count for rescued mappers ##ColumnVariable[norm.rescue] = normalized tag count (tpm) for rescued mappers #sample_id sample_name #-1 UNDEFINED #BO liver #CG liver #DP liver #GW liver #IK liver #IL liver #IM liver #AU brain #AW brain #DO brain #II brain #IJ brain #BD cerebral cortex #GM cerebral cortex #GN cerebral cortex #GO cerebral cortex #GP cerebral cortex #GQ cerebral cortex #GG diencephalon #GH diencephalon #GI diencephalon #GJ diencephalon #GK diencephalon #GL diencephalon #GR diencephalon #GS diencephalon #GT diencephalon #GU diencephalon #GV diencephalon #BU amnion #CF amnion #CT amnion #EG amnion #EH amnion #EI amnion #EJ amnion #EK amnion #EL amnion #EM eye #EN eye #EO eye #EP eye #EQ eye #ER eye #ES eye #ET mammary gland #EU mammary gland #EV mammary gland #EW mammary gland #EX mammary gland #EY mammary gland #EZ mammary gland #FA mammary gland #FB mammary gland #BP placenta #BQ placenta #BR placenta #BS placenta #BT placenta #DX placenta #DY placenta #DZ placenta #EA placenta #GX liver #GY liver #GZ liver #HA liver #HB liver #HC liver #HD liver #HE liver #HF liver #HG liver #HH liver #FN cerebral cortex #FO cerebral cortex #FP cerebral cortex #FQ cerebral cortex #FR cerebral cortex #FS cerebral cortex #FT cerebral cortex #FU cerebral cortex #CAA visual cortex breed in dark room from embryo stage #CAB cerebral cortex breed in dark room from embryo stage #CAC visual cortex #CAD somatosensory cortex #CAE visual cortex #CAF somatosensory cortex #CAG visual cortex #CAH somatosensory cortex #CAI visual cortex #CAJ somatosensory cortex #FV medulla oblongata #FW medulla oblongata #FX medulla oblongata #FY medulla oblongata #FZ medulla oblongata #GA medulla oblongata #CAY lung cloned mouse #CBA lung cloned mouse #CBB lung cloned mouse #CBF lung #CAW lung cloned mouse #CAX lung cloned mouse #CAZ lung cloned mouse #CBC lung cloned mouse #CBD lung cloned mouse #CBE lung cloned mouse #CBG lung #CBH lung #CBI liver cloned mouse #CBJ liver cloned mouse #CBK liver cloned mouse #CBL liver cloned mouse #CBM liver cloned mouse #CBR liver #CBN liver cloned mouse #CBO liver cloned mouse #CBP liver cloned mouse #CBQ liver cloned mouse #CBS liver #CBT liver #CAK liver 0 hour under constant darkness condition #CAL liver 4 hours under constant darkness condition #CAM liver 8 hours under constant darkness condition #CAN liver 12 hours under constant darkness condition #CAO liver 16 hours under constant darkness condition #CAP liver 20 hours under constant darkness condition #CAQ liver 24 hours under constant darkness condition #CAS liver 32 hours under constant darkness condition #CAT liver 36 hours under constant darkness condition #CAU liver 40 hours under constant darkness condition #CAV liver 44 hours under constant darkness condition #CBU macrophage unstimulated sample #CCC blood 2 hours after CpG DNA stimulation #CCD blood 7 hours after CpG DNA stimulation #CCE blood 21 hours after CpG DNA stimulation #CCF macrophage cultured overnight in CSF-1(macrophage growth factor) 2hrs CpG #CCG macrophage cultured overnight in CSF-1(macrophage growth factor) 7hrs CpG #CCH macrophage cultured overnight in CSF-1(macrophage growth factor) 21hrs CpG #CBV macrophage 2 hours after LPS stimulation #CBW macrophage 7 hours after LPS stimulation #CBX macrophage 21 hours after LPS stimulation #CBY macrophage cultured overnight in CSF-1(macrophage growth factor) #CBZ macrophage cultured overnight in CSF-1(macrophage growth factor) 2 hrs LPS #CCA macrophage cultured overnight in CSF-1(macrophage growth factor) 7 hrs LPS #CCB macrophage cultured overnight in CSF-1(macrophage growth factor) 21hrs LPS #CCI liver CRL-1830 Hepa 1-6 36 hours after transformation #CCJ liver CRL-1830 Hepa 1-6 48 hours after transformation #CCK liver CRL-1830 Hepa 1-6 36 hours after transformation #CCL liver CRL-1830 Hepa 1-6 48 hours after transformation #CCM liver CRL-1830 Hepa 1-6 #CCN liver CRL-1830 Hepa 1-6 6 hours after transformation #CCO liver CRL-1830 Hepa 1-6 24 hours after transfromation #CCP liver CRL-1830 Hepa 1-6 48 hours after transformation #CCS liver CRL-1830 Hepa 1-6 36 hours after transformation #CCT liver CRL-1830 Hepa 1-6 48 hours after transformation #60 testis #ID testis #IE testis #IF testis #IG testis #IH testis #CDQ macrophage cultured overnight in CSF-1(macrophage growth factor) #CDR macrophage cultured overnight in CSF-1(macrophage growth factor) 30min LPS #CDS macrophage cultured overnight in CSF-1(macrophage growth factor) 2 hrs LPS #CDT macrophage cultured overnight in CSF-1(macrophage growth factor) 7 hrs LPS #CDU macrophage cultured overnight in CSF-1(macrophage growth factor) 21hrs LPS #CDV macrophage #CDW macrophage 4 hours after LPS stimulation #CDX macrophage 2 hours after CpG DNA stimulation #CDY macrophage 21 hours after LPS stimulation #CDZ macrophage 2 hours after IFN-gamma stimulation #CFC testis CRL-1715 TM4 untreated cells #CFD testis CRL-1715 TM4 DHT (final conc: 0.5 micro molar) treatment for 24hrs #CFE embryo CCL-226 C3H/10T1/2 untreated cells #CFF embryo CCL-226 C3H/10T1/2 DHT (final conc: 0.5 micro molar) treatment for 24hrs #CFS testis CRL-1715 TM4 DHT (final conc: 0.5 micro molar) treatment for 24hrs and 48hrs #CFA embryo CL-173 3T3-L1 untreated cells #CFB embryo CL-173 3T3-L1 DHT (final conc: 0.5 micro molar) treatment for 24hrs #CFR embryo CL-173 3T3-L1 DHT (final conc: 0.5 micro molar) treatment for 24hrs and 48hrs #CDH prostate gland #CFT embryo serum-starved cells were released into complete media for 24 hou #CFU embryo serum-starved cells were irradiated at 20 Gy and released into c #CFV embryo serum-starved cells were released into complete media for 24 hou #CFW embryo serum-starved cells were irradiated at 20 Gy and released into c #CFX heart #CFY muscle #CFZ heart #CGA muscle #CGB prostate gland #CGF macrophage cultured overnight in CSF-1(macrophage growth factor) 24 hrs LPS #CGG DFAT-D1 (mouse preadipocyte) untreated cells #CGH DFAT-D1 (mouse preadipocyte) 2 days after adipogenic induction #CGI DFAT-D1 (mouse preadipocyte) 4 days after adipogenic induction #CGJ DFAT-D1 (mouse preadipocyte) 6 days after adipogenic induction #CGK DFAT-D1 (mouse preadipocyte) 8 days after adipogenic induction #CFO brain CCL-131 Neuro-2a #CFP brain CCL-131 Neuro-2a treatment for 6 hours with MPP(+) #CFQ brain CCL-131 Neuro-2a treatment for 12 hours with MPP(+) #CGC brain CCL-131 Neuro-2a treatment for 48 hours with MPP(+) #CGD corpus striatum STHdh+ #CGE corpus striatum STHdhQ111 #CAR liver 28 hours under constant darkness condition #C6 hippocampus