DoBISCUIT

2024/09/27


Database of Streptomyces-derived Secondary Metabolites

README Content

  1. Database Component
  2. Data Description
  3. License
  4. Update History
  5. Literature
  6. Contact address

1. Database Component

  1. README
  2. DoBISCUIT HTML contents
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2. Data Description

2.1 README

Data name README
Description of data contents HTML file to describe "DoBISCUIT" data.
File README_e.html (English)
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2.2 DoBISCUIT HTML contents

Data name DoBISCUIT HTML contents
Description of data contents

These are static HTML contents converted from database system. You can see those contents in PC etc. without database system nor web server. (Recommended to view in Google Chrome)
File dobiscuit_arc.zip (104 MB)

Data items are the following:
Cluster
Data itemDescription
Compound Characteristics of secondary metabolites
Original source Sequence source of gene cluster
PKS/NRPS Module PKS/NRPS modules in the gene cluster, their domain composition, and literature-confirmed substrates
Reference Relevant literature
Data download Download file for BISCUIT registration information
History Update history

 

CDS
Data itemDescription
Location Position, orientation, length, etc. of CDS within the gene cluster
Annotation Annotation of CDS functions within the gene cluster and supporting information from the literature
Feature Domain structure of CDS within the gene cluster
Sequence Nucleotide and amino acid sequences of CDS within the gene cluster
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3. License

Last updated : 2024/09/26

You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.

 

Creative Commons License

The license for this database is specified in the Creative Commons Attribution 4.0 International.
If you use data from this database, please be sure attribute this database as follows: "DoBISCUIT © NITE licensed under CC Attribution 4.0 International".

The summary of the Creative Commons Attribution 4.0 International is found here.

With regard to this database, you are licensed to:

  1. freely access part or whole of this database, and acquire data;
  2. freely redistribute part or whole of the data from this database; and
  3. freely create and distribute database and other adapted materials based on part or whole of the data from this database,

under the license, as long as you comply with the following conditions:

  1. You must attribute this database in the manner specified by the author or licensor when distributing part or whole of this database or any adapted material.
  2. You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the license.

https://www.nite.go.jp/cgi-bin/contact/?cid=00000144&lang=1

About Providing Links to This Database

You can freely provide links to all contents in this database. But, contents might be changed without notice.

 

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4. Update History

DateUpdate contents
2024/09/30 English archive site is opened. (Archive V1)
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5. Literature

Ichikawa, N; Sasagawa, M; Yamamoto, M; Komaki, H; Yoshida, Y; Yamazaki, S and Fujita, N.
DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters.
Nucleic Acids Research (2013) Database Issue Nucleic Acids Res. 2012 Nov 26.
PMID: 23185043

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6. Contact address

When you have any question about "DoBISCUIT", contact the following:

https://www.nite.go.jp/cgi-bin/contact/?cid=00000144&lang=1

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