Mascot Search Results

Protein View

Match to: gi|28077067 Score: 149
tubulin-specific chaperone d [Mus musculus]
Found in search of C:\Xcalibur\sequest\060_B072704_2.txt

Nominal mass (Mr): 133321; Calculated pI value: 6.08
NCBI BLAST search of gi|28077067 against nr
Unformatted sequence string for pasting into other applications

Taxonomy: Mus musculus
Links to retrieve other entries containing this sequence from NCBI Entrez:
gi|26334501 from Mus musculus
gi|37604160 from Mus musculus

Variable modifications: Acetyl (N-term),Oxidation (M),Propionamide (C),Sulphone (M)
Cleavage by Trypsin: cuts C-term side of KR unless next residue is P
Sequence Coverage: 2%

Matched peptides shown in Bold Red

     1 MVLSNEPAAS AAEEEVEDDA LVRASALEAF GESAETRALL RSLPAVHRER 
    51 ASREVAEERF RVIMDKYQEQ PHLLDPHLEW MMNSLLDLVQ DETSLPDLVH 
   101 LAFKFLYIIT KVRGYKVFLR LFPHEVANVQ PVLDMFTGQN PKDHETWETR 
   151 YMLLLWLSVT CLIPFDFSRL DGNLSTQTGE TRVPTMDRIL QIAESYLVVS 
   201 DKARDAAAVL VSKFITRPDV KQRKMASFLD WSLCTLAHSS FQTIEGVITM 
   251 DGMLQALAQI FKHGKREDCL PYANTVLQCL DGCRLPESSH TSLRKLGVKL 
   301 VQRLGLTFLK PKVATWRYQR GCRSLAANLK LCAPGKSDQK LLSDSLTSDG 
   351 DEDYDVPEGV ETVIEQLLVG LKDKDTVVRW SAAKGIGRMA GRLPRELADD 
   401 VVGSVLDCFS FQETDKAWHG GCLALAELGR RGLLLPSRLS EVVTVILKAL 
   451 TYDEKRGACS VGANVRDAAC YVCWAFARAY EPQELTPFVT AISSALVIAA 
   501 VFDRNVNCRR AASAAFQENV GRQGTFPHGI DILTTADYFA VGNISNCFLI 
   551 ISVFIAGFQE YTKPMIDHLV SMKINHWDGA IRELSAKALH NLTPQVPEYI 
   601 AMHVFPALLL MTQSPDLHTR HGAILACAEV TYALYKLATQ SNRLVTDYLD 
   651 EKAVQSLKQI HQQLCDRHLY RGLGGELMRQ AVCILIEKLS LSRMPFKGDA 
   701 TVEGWQWLIN DTLRSLHLVS SHSRQQIKEV AVSALTALCS EYYVKEPGEA 
   751 GSSIAKELIP QYLAELQSPE EMARCGFSSA LGALPGFLLR GHLQQVLSGL 
   801 RRVTCISPND VSFAEARRDG LKAISRICQT VGVNTRGPPD EVICKENISE 
   851 VYAALLGCMS DYTTDSRGDV GAWVREAAMT SLMDLMLLLA RTEPVLIEAH 
   901 ICERVMCCVA QQASEKIDRF RAHAARVFLT LLHFDSPPIP HVPHRQELES 
   951 LFPRSDVATV NWNAPSQAFP LITQLLGLPT YRYHVLLGLA VSVGGLTEST 
  1001 VRHSTQSLFE YMKGIQKDAQ VLQSFSETLL KVFEDNLLND RVSVSLLKML 
  1051 DQLLANGCFD IFTAEENHPF CVKLLTLCKE EIKKSKDIQK LRSSIAVLCG 
  1101 MVQFNGDVRK KILLQLFLLL GHPFPVIRKS TASQVYEMVL TYSDLVDAEV 
  1151 LDEVMSVLSD TAWDAELPVV REQRNRLCDL LGVPRPQLVP KPIPGS

  Residue Number  Increasing Mass  Decreasing Mass 

 Start - End   Observed  Mr(expt) Mr(calc)   Delta   Miss Sequence
    24 - 37      720.36  1438.70  1438.51     0.19     0  ASALEAFGESAETR  (Ions score 92)
   170 - 182     696.84  1391.66  1391.46     0.20     0  LDGNLSTQTGETR  (Ions score 65)

Error Distribution


LOCUS NP_084154 1196 aa linear ROD 16-MAR-2004 DEFINITION tubulin-specific chaperone d [Mus musculus]. ACCESSION NP_084154 VERSION NP_084154.1 GI:28077067 DBSOURCE REFSEQ: accession NM_029878.1 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus. REFERENCE 1 (residues 1 to 1196) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 AUTHORS The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I & II Team. TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 3 AUTHORS The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium. TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AK041464.1. FEATURES Location/Qualifiers source 1..1196 /organism="Mus musculus" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="11" Protein 1..1196 /product="tubulin-specific chaperone d" Region 26..1193 /region_name="Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]" /note="KOG1943" /db_xref="CDD:19729" Region 63..921 /region_name="Beta-tubulin cofactor D" /note="B-tub_coD" /db_xref="CDD:16369" CDS 1..1196 /gene="Tbcd" /coded_by="NM_029878.1:45..3635" /db_xref="GeneID:108903" /db_xref="LocusID:108903" /db_xref="MGI:1919686"

Mascot:  http://www.matrixscience.com/