Match to: gi|28893521 Score: 130 gem (nuclear organelle) associated protein 4 [Mus musculus] Found in search of C:\Xcalibur\sequest\059_B071604_6.txt Nominal mass (Mr): 120210; Calculated pI value: 5.05 NCBI BLAST search of gi|28893521 against nr Unformatted sequence string for pasting into other applications Taxonomy: Mus musculus Links to retrieve other entries containing this sequence from NCBI Entrez: gi|21619389 from Mus musculus Variable modifications: Acetyl (N-term),Oxidation (M),Propionamide (C),Sulphone (M) Cleavage by Trypsin: cuts C-term side of KR unless next residue is P Sequence Coverage: 2% Matched peptides shown in Bold Red 1 MDLGPLNICE EMTILHGGFL MAEQLFHPKA LVQLTKSDWE HVGQPIVEAL 51 KEISSATAHS QPFAWKKKAL IIIWTKVLQP SPVSPSDTDT RWQEDVFFSV 101 GSMIPTINHT VLFELLKSLE ASGLFIQLLM ALPTTIGRSE LQSFLEHMTV 151 DTSSKDVAFF LDVWWEMMKH KGDQQDPLLS QFRTMAHKYL PSSDEFSHPP 201 KRFKSDPDVG PTMPLLAMLL TGLKQIQKRI LSLEMKCCAL ANLADMLSVF 251 ALLEDDTQEV SATVYLDKLA TVISVWNSDT QNPYHRQALA DKVKEAERDV 301 SLTSLAKLPS ETVFMGFELM YNLLQEWGAE LQDMLNSSQG TNYDTYRLCD 351 SLTSFSQNLE LYLDTTNMPK EEREVVSELA ECVRDFLRKT SRMLNDKGLE 401 DITASIAMAI IEQKMDRHME MCYIFASEKK WAFSDEWVAC LVNNRSLFRE 451 PDLVLSLLET VMEVISSDRV IPQPQIKQVI CLTLECYEDL SLPDKNKVLS 501 GVLHYLGPKG LSDRLSDYLE GFQEDLNTTF NQLAQSTSEQ GLAKAVASVA 551 HLVILNPEVV VKKMCSLAVT NLGTHRFLAQ ILTAFPALKF TEEQGANPCT 601 SFMVSCLKET VWTKFSTPKE EKQFLELVSC LTNPVKPQGI PVAALLEPDE 651 VLKEFVLPFL MLDMEEVGLS LKLFIQTLEA NAGLEEYWLQ TCSPFPLLFS 701 LCQLLDSFSK FWQLPREKRY LTLDSKDLVT HILELLCEIV LANTETFSPD 751 TWAKSLSWLH RKLDQLDWTV GLRLKNFFEG HFKCEVPATL FDICKLSEAQ 801 WTSQVHEGYG PGTGLLAWME CCSVSSSISD QMLSLLVMDV GNPEEVRLFS 851 KGFLVALVQV MPWCSPQEWQ YLQQLTRKLL EKQLLHVPYS LEYIQFVPLL 901 NLKPFAQELQ LSVLSLRVFQ FLCSQSCCNW LPLDGWSHVV KLLCNSLTSV 951 LDAVRLMQSV GPWAQGQKGD LTQETLFVYT QMFCHVLHIM AMLPQEVCEP 1001 LYVLALEILT CYETLSKSNP SVSSLLQKVD EQRFLKSIAK NISPEERRQT 1051 LLQKINNF
Residue Number Increasing Mass Decreasing Mass
Start - End Observed Mr(expt) Mr(calc) Delta Miss Sequence 77 - 91 800.38 1598.74 1598.73 0.01 0 VLQPSPVSPSDTDTR (Ions score 71) 1018 - 1028 580.64 1159.27 1159.31 -0.03 0 SNPSVSSLLQK (Ions score 62) LOCUS NP_796341 1058 aa linear ROD 22-DEC-2003 DEFINITION gem (nuclear organelle) associated protein 4 [Mus musculus]. ACCESSION NP_796341 VERSION NP_796341.1 GI:28893521 DBSOURCE REFSEQ: accession NM_177367.2 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus. REFERENCE 1 (residues 1 to 1058) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (residues 1 to 1058) AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y., Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S., Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I., Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R., Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T., Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H., Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G., Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M., Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H., Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N., Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C., Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D., Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P., Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P., Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H., Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H., Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L., Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S. and Hayashizaki,Y. TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409 (6821), 685-690 (2001) PUBMED 11217851 REFERENCE 3 (residues 1 to 1058) AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K. and Togawa,Y. TITLE RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10 (11), 1757-1771 (2000) PUBMED 11076861 REFERENCE 4 (residues 1 to 1058) AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10 (10), 1617-1630 (2000) PUBMED 11042159 REFERENCE 5 (residues 1 to 1058) AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) PUBMED 10349636 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC031425.1. FEATURES Location/Qualifiers source 1..1058 /organism="Mus musculus" /strain="CZECHII" /db_xref="taxon:10090" /chromosome="11" Protein 1..1058 /product="gem (nuclear organelle) associated protein 4" CDS 1..1058 /gene="Gemin4" /coded_by="NM_177367.2:26..3202" /db_xref="GeneID:276919" /db_xref="LocusID:276919" /db_xref="MGI:2449313"