CREATE portal
2016/03/16HTTPS Site: https://dbarchive.biosciencedbc.jp/data/create-portal/
The database consists of InGap and InCep. InGap is the analysis of 274 mKIAA genes' expressions. InCep is the analysis of 50 mKIAA proteins' interactions.
README Content
1. Database Component
2. Data Description
2.1 README
| Data name | README |
| Description of data contents | HTML file to describe "CREATE portal" data. |
| File | README_e.html(English) |
2.2 InGaP
| Data name | InGaP |
| Description of data contents | Expression of mKIAA genes in mouse organs and cell lines. |
| File | create_portal_ingap.zip (57.6 KB) |
Data items are the following:
| Data item | Description |
|---|---|
| mKIAA No. | Gene number of mouse KIAA |
| Clone name | Name of the clone |
| Accession No. | Accession number for DDBJ/GenBank/EMBL database |
| Alias Name | Gene name |
| Antigen size | Size of the antigen |
| Antigen solubility | Solubility of the antigen |
| Homolog human clone | Clone name for the human homolog |
| Reference protein | Reference protein |
| Predicted molecular weight | Predicted molecular weight |
| Predicted gene function | Predicted gene function (Gene Ontology number) |
| Antigen sequence name | Name of the antigen |
| Antigen sequence | Amino acids sequence of the antigen |
| Purification tag | Status of the purification tag |
| Western blot (adult organs) | Results of the Western blot (adult mouse organs) |
| Western blot (cell lines) | Results of the Western blot (Cultured cell lines) |
| Infrared Fluorescence scanner (cerebellum) | Observation by Infrared Fluorescence scanner (cerebellum) |
| Infrared Fluorescence scanner (forebrain 1) | Observation by Infrared Fluorescence scanner (forebrain 1) |
| Infrared Fluorescence scanner (forebrain 2) | Observation by Infrared Fluorescence scanner (forebrain 2) |
| Confocal laser scanning microscope (neocortex 1) | Observation by Confocal laser scanning microscope (neocortex 1) |
| Confocal laser scanning microscope (neocortex 2) | Observation by Confocal laser scanning microscope (neocortex 2) |
| Confocal laser scanning microscope (hippocampus) | Observation by Confocal laser scanning microscope (hippocampus) |
| Confocal laser scanning microscope (cerebellum) | Observation by Confocal laser scanning microscope (cerebellum) |
| Immunoprecipitation | Results of the immunoprecipitation |
| Mascot search results | Results of the Mascot search in MS |
| Ectopic expression (phase) | Expression of KIAA gene in HEK293 cells (phase) |
| Ectopic expression (fluoro) | Expression of KIAA gene in HEK293 cells (fluoro) |
| mKIAA cDNA array analysis | Results of mKIAA cDNA array analysis |
2.3 InCeP
| Data name | InCeP |
| Description of data contents | mKIAA intracellular signaling pathway. |
| File | create_portal_incep.zip (1 KB) |
Data items are the following:
| Data item | Description |
|---|---|
| mKIAA No. | Gene number of mouse KIAA |
| Pathway image | Image for the signal transduction pathway |
| KeyMolnet file | File derived from KeyMolnet software |
| Reference | Related research paper |
2.4 InCeP images
| Data name | InCeP images |
| Description of data contents | Image files of mKIAA intracellular signaling pathway. |
| File | create_portal_images.zip (13.4 MB) |
2.5 KeyMolnet data
| Data name | KeyMolnet data |
| Description of data contents | KeyMolnet files of mKIAA intracellular signaling pathway. |
| File | create_portal_keymolnet.zip (7.1 MB) |
2.6 Mascot search results
| Data name | Mascot search results |
| Description of data contents | Mascot search result files. |
| File | create_portal_mascot.zip (321 KB) |
3. License
Last updated : 2016/03/16
You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.
The license for this database is specified in the Creative Commons Attribution-Share Alike 4.0 International.
If you use data from this database, please be sure attribute this database as follows: "CREATE portal © Hisashi Koga (Kazusa DNA Research Institute) licensed under CC Attribution-Share Alike 4.0 International".
The summary of the Creative Commons Attribution-Share Alike 4.0 International is found here.
With regard to this database, you are licensed to:
- freely access part or whole of this database, and acquire data;
- freely redistribute part or whole of the data from this database; and
- freely create and distribute database and other adapted materials based on part or whole of the data from this database,
under the license, as long as you comply with the following conditions:
- You must attribute this database in the manner specified by the author or licensor when distributing part or whole of this database or any adapted material.
- You must distribute any adapted material based on part or whole of the data from this database under CC Attribution-Share Alike 4.0 (or later), or CC Attribution-Share Alike Compatible License (the list is here).
- You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the license.
2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan
Kazusa DNA Research Institute
4. Update History
| Date | Update contents |
|---|---|
| 2016/03/16 | CREATE portal English archive site is opened. |
5. Literature
Koga H, Yuasa S, Nagase T, Shimada K, Nagano M, Imai K, Ohara R, Nakajima D, Murakami M, Kawai M, Miki F, Magae J, Inamoto S, Okazaki N, Ohara O.A comprehensive approach for establishment of the platform to analyze functions of KIAA proteins II: public release of inaugural version of InGaP database containing gene/protein expression profiles for 127 mouse KIAA genes/proteins
DNA Res. 2004 Aug 31;11(4):293-304.
PMID: 15500254
Murakami M, Shimada K, Kawai M, Koga H.
InCeP: intracellular pathway based on mKIAA protein-protein interactions
DNA Res. 2005;12(5):379-87.
PMID: 16769695
6. Contact address
When you have any question about "CREATE portal", contact the following:
2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan
Kazusa DNA Research Institute