Job ID = 14520947 SRX = SRX9431253 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 5474566 spots for SRR12979547/SRR12979547.sra Written 5474566 spots for SRR12979547/SRR12979547.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:08 5474566 reads; of these: 5474566 (100.00%) were unpaired; of these: 622099 (11.36%) aligned 0 times 4181209 (76.38%) aligned exactly 1 time 671258 (12.26%) aligned >1 times 88.64% overall alignment rate Time searching: 00:01:08 Overall time: 00:01:08 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 992796 / 4852467 = 0.2046 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 20:12:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 20:12:32: #1 read tag files... INFO @ Sat, 15 Jan 2022 20:12:32: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 20:12:38: 1000000 INFO @ Sat, 15 Jan 2022 20:12:43: 2000000 INFO @ Sat, 15 Jan 2022 20:12:48: 3000000 INFO @ Sat, 15 Jan 2022 20:12:52: #1 tag size is determined as 68 bps INFO @ Sat, 15 Jan 2022 20:12:52: #1 tag size = 68 INFO @ Sat, 15 Jan 2022 20:12:52: #1 total tags in treatment: 3859671 INFO @ Sat, 15 Jan 2022 20:12:52: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 20:12:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 20:12:52: #1 tags after filtering in treatment: 3859671 INFO @ Sat, 15 Jan 2022 20:12:52: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 20:12:52: #1 finished! INFO @ Sat, 15 Jan 2022 20:12:52: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 20:12:52: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 20:12:52: #2 number of paired peaks: 36 WARNING @ Sat, 15 Jan 2022 20:12:52: Too few paired peaks (36) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 20:12:52: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 20:13:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 20:13:02: #1 read tag files... INFO @ Sat, 15 Jan 2022 20:13:02: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 20:13:07: 1000000 INFO @ Sat, 15 Jan 2022 20:13:12: 2000000 INFO @ Sat, 15 Jan 2022 20:13:17: 3000000 INFO @ Sat, 15 Jan 2022 20:13:21: #1 tag size is determined as 68 bps INFO @ Sat, 15 Jan 2022 20:13:21: #1 tag size = 68 INFO @ Sat, 15 Jan 2022 20:13:21: #1 total tags in treatment: 3859671 INFO @ Sat, 15 Jan 2022 20:13:21: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 20:13:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 20:13:21: #1 tags after filtering in treatment: 3859671 INFO @ Sat, 15 Jan 2022 20:13:21: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 20:13:21: #1 finished! INFO @ Sat, 15 Jan 2022 20:13:21: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 20:13:21: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 20:13:22: #2 number of paired peaks: 36 WARNING @ Sat, 15 Jan 2022 20:13:22: Too few paired peaks (36) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 20:13:22: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 20:13:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 20:13:32: #1 read tag files... INFO @ Sat, 15 Jan 2022 20:13:32: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 20:13:37: 1000000 INFO @ Sat, 15 Jan 2022 20:13:42: 2000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 20:13:47: 3000000 INFO @ Sat, 15 Jan 2022 20:13:51: #1 tag size is determined as 68 bps INFO @ Sat, 15 Jan 2022 20:13:51: #1 tag size = 68 INFO @ Sat, 15 Jan 2022 20:13:51: #1 total tags in treatment: 3859671 INFO @ Sat, 15 Jan 2022 20:13:51: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 20:13:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 20:13:52: #1 tags after filtering in treatment: 3859671 INFO @ Sat, 15 Jan 2022 20:13:52: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 20:13:52: #1 finished! INFO @ Sat, 15 Jan 2022 20:13:52: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 20:13:52: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 20:13:52: #2 number of paired peaks: 36 WARNING @ Sat, 15 Jan 2022 20:13:52: Too few paired peaks (36) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 20:13:52: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431253/SRX9431253.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BigWig に変換しました。