Job ID = 2641249 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 21,795,806 reads read : 43,591,612 reads written : 43,591,612 2019-08-24T13:24:31 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-08-24T13:24:31 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-08-24T13:24:31 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-08-24T13:24:31 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-08-24T13:24:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-08-24T13:24:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 21,617,601 reads read : 43,235,202 reads written : 43,235,202 spots read : 22,522,824 reads read : 45,045,648 reads written : 45,045,648 2019-08-24T13:43:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-08-24T13:44:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 22,163,913 reads read : 44,327,826 reads written : 44,327,826 fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:30:32 88100144 reads; of these: 88100144 (100.00%) were paired; of these: 43509628 (49.39%) aligned concordantly 0 times 42428938 (48.16%) aligned concordantly exactly 1 time 2161578 (2.45%) aligned concordantly >1 times ---- 43509628 pairs aligned concordantly 0 times; of these: 442461 (1.02%) aligned discordantly 1 time ---- 43067167 pairs aligned 0 times concordantly or discordantly; of these: 86134334 mates make up the pairs; of these: 76896290 (89.27%) aligned 0 times 8689937 (10.09%) aligned exactly 1 time 548107 (0.64%) aligned >1 times 56.36% overall alignment rate Time searching: 00:30:32 Overall time: 00:30:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrIX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrVI... [bam_rmdup_core] processing reference chrVII... [bam_rmdup_core] processing reference chrVIII... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXI... [bam_rmdup_core] processing reference chrXII... [bam_rmdup_core] processing reference chrXIII... [bam_rmdup_core] processing reference chrXIV... [bam_rmdup_core] processing reference chrXV... [bam_rmdup_core] processing reference chrXVI... [bam_rmdup_core] 11109488 / 45025174 = 0.2467 in library ' ' BAM に変換しました。 Bed ファイルを作成中... INFO @ Sat, 24 Aug 2019 23:50:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 24 Aug 2019 23:50:48: #1 read tag files... INFO @ Sat, 24 Aug 2019 23:50:48: #1 read treatment tags... INFO @ Sat, 24 Aug 2019 23:50:54: 1000000 INFO @ Sat, 24 Aug 2019 23:51:01: 2000000 INFO @ Sat, 24 Aug 2019 23:51:07: 3000000 INFO @ Sat, 24 Aug 2019 23:51:14: 4000000 INFO @ Sat, 24 Aug 2019 23:51:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 24 Aug 2019 23:51:17: #1 read tag files... INFO @ Sat, 24 Aug 2019 23:51:17: #1 read treatment tags... INFO @ Sat, 24 Aug 2019 23:51:20: 5000000 INFO @ Sat, 24 Aug 2019 23:51:23: 1000000 INFO @ Sat, 24 Aug 2019 23:51:27: 6000000 INFO @ Sat, 24 Aug 2019 23:51:29: 2000000 INFO @ Sat, 24 Aug 2019 23:51:33: 7000000 INFO @ Sat, 24 Aug 2019 23:51:36: 3000000 INFO @ Sat, 24 Aug 2019 23:51:39: 8000000 INFO @ Sat, 24 Aug 2019 23:51:42: 4000000 BedGraph に変換中... INFO @ Sat, 24 Aug 2019 23:51:46: 9000000 INFO @ Sat, 24 Aug 2019 23:51:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 24 Aug 2019 23:51:47: #1 read tag files... INFO @ Sat, 24 Aug 2019 23:51:47: #1 read treatment tags... INFO @ Sat, 24 Aug 2019 23:51:48: 5000000 INFO @ Sat, 24 Aug 2019 23:51:53: 10000000 INFO @ Sat, 24 Aug 2019 23:51:53: 1000000 INFO @ Sat, 24 Aug 2019 23:51:55: 6000000 INFO @ Sat, 24 Aug 2019 23:51:59: 11000000 INFO @ Sat, 24 Aug 2019 23:52:00: 2000000 INFO @ Sat, 24 Aug 2019 23:52:01: 7000000 INFO @ Sat, 24 Aug 2019 23:52:05: 12000000 INFO @ Sat, 24 Aug 2019 23:52:06: 3000000 INFO @ Sat, 24 Aug 2019 23:52:07: 8000000 INFO @ Sat, 24 Aug 2019 23:52:11: 13000000 INFO @ Sat, 24 Aug 2019 23:52:12: 4000000 INFO @ Sat, 24 Aug 2019 23:52:14: 9000000 INFO @ Sat, 24 Aug 2019 23:52:18: 14000000 INFO @ Sat, 24 Aug 2019 23:52:19: 5000000 INFO @ Sat, 24 Aug 2019 23:52:20: 10000000 INFO @ Sat, 24 Aug 2019 23:52:24: 15000000 INFO @ Sat, 24 Aug 2019 23:52:25: 6000000 INFO @ Sat, 24 Aug 2019 23:52:26: 11000000 INFO @ Sat, 24 Aug 2019 23:52:30: 16000000 INFO @ Sat, 24 Aug 2019 23:52:31: 7000000 INFO @ Sat, 24 Aug 2019 23:52:32: 12000000 INFO @ Sat, 24 Aug 2019 23:52:36: 17000000 INFO @ Sat, 24 Aug 2019 23:52:37: 8000000 INFO @ Sat, 24 Aug 2019 23:52:39: 13000000 INFO @ Sat, 24 Aug 2019 23:52:42: 18000000 INFO @ Sat, 24 Aug 2019 23:52:43: 9000000 INFO @ Sat, 24 Aug 2019 23:52:45: 14000000 INFO @ Sat, 24 Aug 2019 23:52:48: 19000000 INFO @ Sat, 24 Aug 2019 23:52:50: 10000000 INFO @ Sat, 24 Aug 2019 23:52:51: 15000000 INFO @ Sat, 24 Aug 2019 23:52:55: 20000000 INFO @ Sat, 24 Aug 2019 23:52:56: 11000000 INFO @ Sat, 24 Aug 2019 23:52:57: 16000000 INFO @ Sat, 24 Aug 2019 23:53:01: 21000000 INFO @ Sat, 24 Aug 2019 23:53:02: 12000000 INFO @ Sat, 24 Aug 2019 23:53:03: 17000000 INFO @ Sat, 24 Aug 2019 23:53:07: 22000000 INFO @ Sat, 24 Aug 2019 23:53:08: 13000000 INFO @ Sat, 24 Aug 2019 23:53:10: 18000000 INFO @ Sat, 24 Aug 2019 23:53:14: 23000000 INFO @ Sat, 24 Aug 2019 23:53:14: 14000000 INFO @ Sat, 24 Aug 2019 23:53:16: 19000000 INFO @ Sat, 24 Aug 2019 23:53:20: 24000000 INFO @ Sat, 24 Aug 2019 23:53:20: 15000000 INFO @ Sat, 24 Aug 2019 23:53:22: 20000000 INFO @ Sat, 24 Aug 2019 23:53:27: 25000000 INFO @ Sat, 24 Aug 2019 23:53:27: 16000000 INFO @ Sat, 24 Aug 2019 23:53:28: 21000000 INFO @ Sat, 24 Aug 2019 23:53:33: 17000000 INFO @ Sat, 24 Aug 2019 23:53:33: 26000000 INFO @ Sat, 24 Aug 2019 23:53:34: 22000000 INFO @ Sat, 24 Aug 2019 23:53:39: 18000000 INFO @ Sat, 24 Aug 2019 23:53:39: 27000000 INFO @ Sat, 24 Aug 2019 23:53:40: 23000000 INFO @ Sat, 24 Aug 2019 23:53:45: 19000000 INFO @ Sat, 24 Aug 2019 23:53:46: 28000000 INFO @ Sat, 24 Aug 2019 23:53:46: 24000000 INFO @ Sat, 24 Aug 2019 23:53:51: 20000000 INFO @ Sat, 24 Aug 2019 23:53:52: 29000000 INFO @ Sat, 24 Aug 2019 23:53:52: 25000000 INFO @ Sat, 24 Aug 2019 23:53:57: 21000000 INFO @ Sat, 24 Aug 2019 23:53:58: 30000000 INFO @ Sat, 24 Aug 2019 23:53:59: 26000000 INFO @ Sat, 24 Aug 2019 23:54:03: 22000000 INFO @ Sat, 24 Aug 2019 23:54:05: 31000000 INFO @ Sat, 24 Aug 2019 23:54:05: 27000000 INFO @ Sat, 24 Aug 2019 23:54:09: 23000000 INFO @ Sat, 24 Aug 2019 23:54:11: 32000000 INFO @ Sat, 24 Aug 2019 23:54:11: 28000000 INFO @ Sat, 24 Aug 2019 23:54:15: 24000000 INFO @ Sat, 24 Aug 2019 23:54:17: 33000000 INFO @ Sat, 24 Aug 2019 23:54:17: 29000000 INFO @ Sat, 24 Aug 2019 23:54:22: 25000000 INFO @ Sat, 24 Aug 2019 23:54:23: 30000000 INFO @ Sat, 24 Aug 2019 23:54:23: 34000000 INFO @ Sat, 24 Aug 2019 23:54:28: 26000000 INFO @ Sat, 24 Aug 2019 23:54:29: 31000000 INFO @ Sat, 24 Aug 2019 23:54:30: 35000000 INFO @ Sat, 24 Aug 2019 23:54:34: 27000000 INFO @ Sat, 24 Aug 2019 23:54:35: 32000000 INFO @ Sat, 24 Aug 2019 23:54:36: 36000000 INFO @ Sat, 24 Aug 2019 23:54:40: 28000000 INFO @ Sat, 24 Aug 2019 23:54:41: 33000000 INFO @ Sat, 24 Aug 2019 23:54:42: 37000000 INFO @ Sat, 24 Aug 2019 23:54:46: 29000000 INFO @ Sat, 24 Aug 2019 23:54:47: 34000000 INFO @ Sat, 24 Aug 2019 23:54:48: 38000000 INFO @ Sat, 24 Aug 2019 23:54:52: 30000000 INFO @ Sat, 24 Aug 2019 23:54:53: 35000000 INFO @ Sat, 24 Aug 2019 23:54:55: 39000000 INFO @ Sat, 24 Aug 2019 23:54:58: 31000000 INFO @ Sat, 24 Aug 2019 23:54:59: 36000000 INFO @ Sat, 24 Aug 2019 23:55:01: 40000000 INFO @ Sat, 24 Aug 2019 23:55:04: 32000000 INFO @ Sat, 24 Aug 2019 23:55:05: 37000000 INFO @ Sat, 24 Aug 2019 23:55:07: 41000000 INFO @ Sat, 24 Aug 2019 23:55:10: 33000000 INFO @ Sat, 24 Aug 2019 23:55:11: 38000000 INFO @ Sat, 24 Aug 2019 23:55:13: 42000000 INFO @ Sat, 24 Aug 2019 23:55:16: 34000000 INFO @ Sat, 24 Aug 2019 23:55:17: 39000000 INFO @ Sat, 24 Aug 2019 23:55:20: 43000000 INFO @ Sat, 24 Aug 2019 23:55:22: 35000000 INFO @ Sat, 24 Aug 2019 23:55:23: 40000000 INFO @ Sat, 24 Aug 2019 23:55:26: 44000000 INFO @ Sat, 24 Aug 2019 23:55:28: 36000000 INFO @ Sat, 24 Aug 2019 23:55:29: 41000000 INFO @ Sat, 24 Aug 2019 23:55:32: 45000000 INFO @ Sat, 24 Aug 2019 23:55:34: 37000000 INFO @ Sat, 24 Aug 2019 23:55:36: 42000000 INFO @ Sat, 24 Aug 2019 23:55:38: 46000000 INFO @ Sat, 24 Aug 2019 23:55:40: 38000000 INFO @ Sat, 24 Aug 2019 23:55:42: 43000000 INFO @ Sat, 24 Aug 2019 23:55:45: 47000000 INFO @ Sat, 24 Aug 2019 23:55:46: 39000000 INFO @ Sat, 24 Aug 2019 23:55:48: 44000000 INFO @ Sat, 24 Aug 2019 23:55:50: 48000000 INFO @ Sat, 24 Aug 2019 23:55:52: 40000000 INFO @ Sat, 24 Aug 2019 23:55:54: 45000000 INFO @ Sat, 24 Aug 2019 23:55:56: 49000000 INFO @ Sat, 24 Aug 2019 23:55:58: 41000000 INFO @ Sat, 24 Aug 2019 23:56:00: 46000000 INFO @ Sat, 24 Aug 2019 23:56:02: 50000000 INFO @ Sat, 24 Aug 2019 23:56:04: 42000000 INFO @ Sat, 24 Aug 2019 23:56:06: 47000000 INFO @ Sat, 24 Aug 2019 23:56:08: 51000000 INFO @ Sat, 24 Aug 2019 23:56:10: 43000000 INFO @ Sat, 24 Aug 2019 23:56:12: 48000000 INFO @ Sat, 24 Aug 2019 23:56:14: 52000000 INFO @ Sat, 24 Aug 2019 23:56:16: 44000000 INFO @ Sat, 24 Aug 2019 23:56:18: 49000000 INFO @ Sat, 24 Aug 2019 23:56:20: 53000000 INFO @ Sat, 24 Aug 2019 23:56:22: 45000000 INFO @ Sat, 24 Aug 2019 23:56:24: 50000000 INFO @ Sat, 24 Aug 2019 23:56:26: 54000000 INFO @ Sat, 24 Aug 2019 23:56:28: 46000000 INFO @ Sat, 24 Aug 2019 23:56:30: 51000000 INFO @ Sat, 24 Aug 2019 23:56:31: 55000000 INFO @ Sat, 24 Aug 2019 23:56:34: 47000000 INFO @ Sat, 24 Aug 2019 23:56:36: 52000000 INFO @ Sat, 24 Aug 2019 23:56:37: 56000000 INFO @ Sat, 24 Aug 2019 23:56:40: 48000000 INFO @ Sat, 24 Aug 2019 23:56:42: 53000000 INFO @ Sat, 24 Aug 2019 23:56:43: 57000000 INFO @ Sat, 24 Aug 2019 23:56:46: 49000000 INFO @ Sat, 24 Aug 2019 23:56:48: 54000000 INFO @ Sat, 24 Aug 2019 23:56:49: 58000000 INFO @ Sat, 24 Aug 2019 23:56:52: 50000000 INFO @ Sat, 24 Aug 2019 23:56:55: 55000000 INFO @ Sat, 24 Aug 2019 23:56:55: 59000000 INFO @ Sat, 24 Aug 2019 23:56:57: 51000000 INFO @ Sat, 24 Aug 2019 23:57:01: 56000000 INFO @ Sat, 24 Aug 2019 23:57:01: 60000000 INFO @ Sat, 24 Aug 2019 23:57:03: 52000000 INFO @ Sat, 24 Aug 2019 23:57:07: 57000000 INFO @ Sat, 24 Aug 2019 23:57:07: 61000000 INFO @ Sat, 24 Aug 2019 23:57:09: 53000000 INFO @ Sat, 24 Aug 2019 23:57:13: 58000000 INFO @ Sat, 24 Aug 2019 23:57:13: 62000000 INFO @ Sat, 24 Aug 2019 23:57:15: 54000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 24 Aug 2019 23:57:19: 59000000 INFO @ Sat, 24 Aug 2019 23:57:19: 63000000 INFO @ Sat, 24 Aug 2019 23:57:21: 55000000 INFO @ Sat, 24 Aug 2019 23:57:25: 60000000 INFO @ Sat, 24 Aug 2019 23:57:25: 64000000 INFO @ Sat, 24 Aug 2019 23:57:27: 56000000 INFO @ Sat, 24 Aug 2019 23:57:31: 61000000 INFO @ Sat, 24 Aug 2019 23:57:31: 65000000 INFO @ Sat, 24 Aug 2019 23:57:33: 57000000 INFO @ Sat, 24 Aug 2019 23:57:37: 62000000 INFO @ Sat, 24 Aug 2019 23:57:37: 66000000 BigWig に変換しました。 INFO @ Sat, 24 Aug 2019 23:57:39: 58000000 INFO @ Sat, 24 Aug 2019 23:57:43: 63000000 INFO @ Sat, 24 Aug 2019 23:57:43: 67000000 INFO @ Sat, 24 Aug 2019 23:57:45: 59000000 INFO @ Sat, 24 Aug 2019 23:57:49: 64000000 INFO @ Sat, 24 Aug 2019 23:57:49: 68000000 INFO @ Sat, 24 Aug 2019 23:57:51: 60000000 INFO @ Sat, 24 Aug 2019 23:57:55: 69000000 INFO @ Sat, 24 Aug 2019 23:57:55: 65000000 INFO @ Sat, 24 Aug 2019 23:57:57: 61000000 INFO @ Sat, 24 Aug 2019 23:58:01: 70000000 INFO @ Sat, 24 Aug 2019 23:58:01: 66000000 INFO @ Sat, 24 Aug 2019 23:58:03: 62000000 INFO @ Sat, 24 Aug 2019 23:58:07: 71000000 INFO @ Sat, 24 Aug 2019 23:58:07: 67000000 INFO @ Sat, 24 Aug 2019 23:58:09: 63000000 INFO @ Sat, 24 Aug 2019 23:58:13: 72000000 INFO @ Sat, 24 Aug 2019 23:58:14: 68000000 INFO @ Sat, 24 Aug 2019 23:58:15: 64000000 INFO @ Sat, 24 Aug 2019 23:58:19: 73000000 INFO @ Sat, 24 Aug 2019 23:58:20: 69000000 INFO @ Sat, 24 Aug 2019 23:58:21: 65000000 INFO @ Sat, 24 Aug 2019 23:58:25: 74000000 INFO @ Sat, 24 Aug 2019 23:58:26: 70000000 INFO @ Sat, 24 Aug 2019 23:58:27: 66000000 INFO @ Sat, 24 Aug 2019 23:58:31: 75000000 INFO @ Sat, 24 Aug 2019 23:58:32: 71000000 INFO @ Sat, 24 Aug 2019 23:58:33: 67000000 INFO @ Sat, 24 Aug 2019 23:58:37: 76000000 INFO @ Sat, 24 Aug 2019 23:58:38: 72000000 INFO @ Sat, 24 Aug 2019 23:58:39: 68000000 INFO @ Sat, 24 Aug 2019 23:58:42: 77000000 INFO @ Sat, 24 Aug 2019 23:58:44: #1 tag size is determined as 35 bps INFO @ Sat, 24 Aug 2019 23:58:44: #1 tag size = 35 INFO @ Sat, 24 Aug 2019 23:58:44: #1 total tags in treatment: 33532684 INFO @ Sat, 24 Aug 2019 23:58:44: #1 user defined the maximum tags... INFO @ Sat, 24 Aug 2019 23:58:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 24 Aug 2019 23:58:44: 73000000 INFO @ Sat, 24 Aug 2019 23:58:45: #1 tags after filtering in treatment: 11790112 INFO @ Sat, 24 Aug 2019 23:58:45: #1 Redundant rate of treatment: 0.65 INFO @ Sat, 24 Aug 2019 23:58:45: #1 finished! INFO @ Sat, 24 Aug 2019 23:58:45: #2 Build Peak Model... INFO @ Sat, 24 Aug 2019 23:58:45: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 24 Aug 2019 23:58:45: 69000000 INFO @ Sat, 24 Aug 2019 23:58:46: #2 number of paired peaks: 0 WARNING @ Sat, 24 Aug 2019 23:58:46: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 24 Aug 2019 23:58:46: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 3 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 24 Aug 2019 23:58:50: 74000000 INFO @ Sat, 24 Aug 2019 23:58:51: 70000000 INFO @ Sat, 24 Aug 2019 23:58:56: 75000000 INFO @ Sat, 24 Aug 2019 23:58:57: 71000000 INFO @ Sat, 24 Aug 2019 23:59:02: 76000000 INFO @ Sat, 24 Aug 2019 23:59:02: 72000000 INFO @ Sat, 24 Aug 2019 23:59:08: 73000000 INFO @ Sat, 24 Aug 2019 23:59:08: 77000000 INFO @ Sat, 24 Aug 2019 23:59:09: #1 tag size is determined as 35 bps INFO @ Sat, 24 Aug 2019 23:59:09: #1 tag size = 35 INFO @ Sat, 24 Aug 2019 23:59:09: #1 total tags in treatment: 33532684 INFO @ Sat, 24 Aug 2019 23:59:09: #1 user defined the maximum tags... INFO @ Sat, 24 Aug 2019 23:59:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 24 Aug 2019 23:59:10: #1 tags after filtering in treatment: 11790112 INFO @ Sat, 24 Aug 2019 23:59:10: #1 Redundant rate of treatment: 0.65 INFO @ Sat, 24 Aug 2019 23:59:10: #1 finished! INFO @ Sat, 24 Aug 2019 23:59:10: #2 Build Peak Model... INFO @ Sat, 24 Aug 2019 23:59:10: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 24 Aug 2019 23:59:11: #2 number of paired peaks: 0 WARNING @ Sat, 24 Aug 2019 23:59:11: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 24 Aug 2019 23:59:11: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 24 Aug 2019 23:59:13: 74000000 INFO @ Sat, 24 Aug 2019 23:59:18: 75000000 INFO @ Sat, 24 Aug 2019 23:59:24: 76000000 INFO @ Sat, 24 Aug 2019 23:59:29: 77000000 INFO @ Sat, 24 Aug 2019 23:59:31: #1 tag size is determined as 35 bps INFO @ Sat, 24 Aug 2019 23:59:31: #1 tag size = 35 INFO @ Sat, 24 Aug 2019 23:59:31: #1 total tags in treatment: 33532684 INFO @ Sat, 24 Aug 2019 23:59:31: #1 user defined the maximum tags... INFO @ Sat, 24 Aug 2019 23:59:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 24 Aug 2019 23:59:31: #1 tags after filtering in treatment: 11790112 INFO @ Sat, 24 Aug 2019 23:59:31: #1 Redundant rate of treatment: 0.65 INFO @ Sat, 24 Aug 2019 23:59:31: #1 finished! INFO @ Sat, 24 Aug 2019 23:59:31: #2 Build Peak Model... INFO @ Sat, 24 Aug 2019 23:59:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 24 Aug 2019 23:59:32: #2 number of paired peaks: 0 WARNING @ Sat, 24 Aug 2019 23:59:32: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 24 Aug 2019 23:59:32: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX6403225/SRX6403225.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling