Job ID = 14519953 SRX = SRX10341706 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 9346028 spots for SRR13963714/SRR13963714.sra Written 9346028 spots for SRR13963714/SRR13963714.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:23 9346028 reads; of these: 9346028 (100.00%) were unpaired; of these: 972825 (10.41%) aligned 0 times 6973924 (74.62%) aligned exactly 1 time 1399279 (14.97%) aligned >1 times 89.59% overall alignment rate Time searching: 00:01:23 Overall time: 00:01:23 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 2572932 / 8373203 = 0.3073 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 18:15:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 18:15:27: #1 read tag files... INFO @ Sat, 15 Jan 2022 18:15:27: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 18:15:33: 1000000 INFO @ Sat, 15 Jan 2022 18:15:38: 2000000 INFO @ Sat, 15 Jan 2022 18:15:44: 3000000 INFO @ Sat, 15 Jan 2022 18:15:50: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 18:15:55: 5000000 INFO @ Sat, 15 Jan 2022 18:15:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 18:15:57: #1 read tag files... INFO @ Sat, 15 Jan 2022 18:15:57: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 18:16:00: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 18:16:00: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 18:16:00: #1 total tags in treatment: 5800271 INFO @ Sat, 15 Jan 2022 18:16:00: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 18:16:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 18:16:00: #1 tags after filtering in treatment: 5800271 INFO @ Sat, 15 Jan 2022 18:16:00: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 18:16:00: #1 finished! INFO @ Sat, 15 Jan 2022 18:16:00: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 18:16:00: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 18:16:00: #2 number of paired peaks: 0 WARNING @ Sat, 15 Jan 2022 18:16:00: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 18:16:00: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 18:16:03: 1000000 INFO @ Sat, 15 Jan 2022 18:16:09: 2000000 INFO @ Sat, 15 Jan 2022 18:16:14: 3000000 INFO @ Sat, 15 Jan 2022 18:16:20: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 18:16:26: 5000000 INFO @ Sat, 15 Jan 2022 18:16:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 18:16:27: #1 read tag files... INFO @ Sat, 15 Jan 2022 18:16:27: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 18:16:30: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 18:16:30: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 18:16:30: #1 total tags in treatment: 5800271 INFO @ Sat, 15 Jan 2022 18:16:30: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 18:16:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 18:16:30: #1 tags after filtering in treatment: 5800271 INFO @ Sat, 15 Jan 2022 18:16:30: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 18:16:30: #1 finished! INFO @ Sat, 15 Jan 2022 18:16:30: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 18:16:30: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 18:16:30: #2 number of paired peaks: 0 WARNING @ Sat, 15 Jan 2022 18:16:30: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 18:16:30: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 18:16:34: 1000000 INFO @ Sat, 15 Jan 2022 18:16:40: 2000000 INFO @ Sat, 15 Jan 2022 18:16:45: 3000000 INFO @ Sat, 15 Jan 2022 18:16:51: 4000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 18:16:57: 5000000 INFO @ Sat, 15 Jan 2022 18:17:02: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 18:17:02: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 18:17:02: #1 total tags in treatment: 5800271 INFO @ Sat, 15 Jan 2022 18:17:02: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 18:17:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 18:17:02: #1 tags after filtering in treatment: 5800271 INFO @ Sat, 15 Jan 2022 18:17:02: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 18:17:02: #1 finished! INFO @ Sat, 15 Jan 2022 18:17:02: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 18:17:02: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 18:17:02: #2 number of paired peaks: 0 WARNING @ Sat, 15 Jan 2022 18:17:02: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 18:17:02: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341706/SRX10341706.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BigWig に変換しました。