Job ID = 8184621 SRX = SRX8047630 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-08-10T05:01:53 prefetch.2.10.7: 1) Downloading 'SRR11471354'... 2020-08-10T05:01:53 prefetch.2.10.7: Downloading via HTTPS... 2020-08-10T05:05:03 prefetch.2.10.7: HTTPS download succeed 2020-08-10T05:05:03 prefetch.2.10.7: 1) 'SRR11471354' was downloaded successfully Read 62288285 spots for SRR11471354/SRR11471354.sra Written 62288285 spots for SRR11471354/SRR11471354.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:52:09 62288285 reads; of these: 62288285 (100.00%) were unpaired; of these: 1620643 (2.60%) aligned 0 times 43525191 (69.88%) aligned exactly 1 time 17142451 (27.52%) aligned >1 times 97.40% overall alignment rate Time searching: 00:52:12 Overall time: 00:52:12 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 2545929 / 60667642 = 0.0420 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 15:16:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 15:16:02: #1 read tag files... INFO @ Mon, 10 Aug 2020 15:16:02: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 15:16:08: 1000000 INFO @ Mon, 10 Aug 2020 15:16:14: 2000000 INFO @ Mon, 10 Aug 2020 15:16:19: 3000000 INFO @ Mon, 10 Aug 2020 15:16:25: 4000000 INFO @ Mon, 10 Aug 2020 15:16:30: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 15:16:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 15:16:32: #1 read tag files... INFO @ Mon, 10 Aug 2020 15:16:32: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 15:16:36: 6000000 INFO @ Mon, 10 Aug 2020 15:16:38: 1000000 INFO @ Mon, 10 Aug 2020 15:16:42: 7000000 INFO @ Mon, 10 Aug 2020 15:16:44: 2000000 INFO @ Mon, 10 Aug 2020 15:16:48: 8000000 INFO @ Mon, 10 Aug 2020 15:16:50: 3000000 INFO @ Mon, 10 Aug 2020 15:16:54: 9000000 INFO @ Mon, 10 Aug 2020 15:16:56: 4000000 INFO @ Mon, 10 Aug 2020 15:17:00: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 15:17:02: 5000000 INFO @ Mon, 10 Aug 2020 15:17:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 15:17:03: #1 read tag files... INFO @ Mon, 10 Aug 2020 15:17:03: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 15:17:06: 11000000 INFO @ Mon, 10 Aug 2020 15:17:08: 6000000 INFO @ Mon, 10 Aug 2020 15:17:09: 1000000 INFO @ Mon, 10 Aug 2020 15:17:12: 12000000 INFO @ Mon, 10 Aug 2020 15:17:14: 7000000 INFO @ Mon, 10 Aug 2020 15:17:15: 2000000 INFO @ Mon, 10 Aug 2020 15:17:18: 13000000 INFO @ Mon, 10 Aug 2020 15:17:21: 8000000 INFO @ Mon, 10 Aug 2020 15:17:21: 3000000 INFO @ Mon, 10 Aug 2020 15:17:25: 14000000 INFO @ Mon, 10 Aug 2020 15:17:27: 9000000 INFO @ Mon, 10 Aug 2020 15:17:28: 4000000 INFO @ Mon, 10 Aug 2020 15:17:31: 15000000 INFO @ Mon, 10 Aug 2020 15:17:34: 10000000 INFO @ Mon, 10 Aug 2020 15:17:34: 5000000 INFO @ Mon, 10 Aug 2020 15:17:37: 16000000 INFO @ Mon, 10 Aug 2020 15:17:41: 11000000 INFO @ Mon, 10 Aug 2020 15:17:41: 6000000 INFO @ Mon, 10 Aug 2020 15:17:44: 17000000 INFO @ Mon, 10 Aug 2020 15:17:47: 12000000 INFO @ Mon, 10 Aug 2020 15:17:47: 7000000 INFO @ Mon, 10 Aug 2020 15:17:50: 18000000 INFO @ Mon, 10 Aug 2020 15:17:54: 13000000 INFO @ Mon, 10 Aug 2020 15:17:54: 8000000 INFO @ Mon, 10 Aug 2020 15:17:57: 19000000 INFO @ Mon, 10 Aug 2020 15:18:00: 9000000 INFO @ Mon, 10 Aug 2020 15:18:00: 14000000 INFO @ Mon, 10 Aug 2020 15:18:03: 20000000 INFO @ Mon, 10 Aug 2020 15:18:06: 10000000 INFO @ Mon, 10 Aug 2020 15:18:07: 15000000 INFO @ Mon, 10 Aug 2020 15:18:09: 21000000 INFO @ Mon, 10 Aug 2020 15:18:13: 11000000 INFO @ Mon, 10 Aug 2020 15:18:13: 16000000 INFO @ Mon, 10 Aug 2020 15:18:16: 22000000 INFO @ Mon, 10 Aug 2020 15:18:19: 12000000 INFO @ Mon, 10 Aug 2020 15:18:19: 17000000 INFO @ Mon, 10 Aug 2020 15:18:22: 23000000 INFO @ Mon, 10 Aug 2020 15:18:26: 13000000 INFO @ Mon, 10 Aug 2020 15:18:26: 18000000 INFO @ Mon, 10 Aug 2020 15:18:29: 24000000 INFO @ Mon, 10 Aug 2020 15:18:32: 14000000 INFO @ Mon, 10 Aug 2020 15:18:32: 19000000 INFO @ Mon, 10 Aug 2020 15:18:35: 25000000 INFO @ Mon, 10 Aug 2020 15:18:38: 15000000 INFO @ Mon, 10 Aug 2020 15:18:39: 20000000 INFO @ Mon, 10 Aug 2020 15:18:42: 26000000 INFO @ Mon, 10 Aug 2020 15:18:45: 16000000 INFO @ Mon, 10 Aug 2020 15:18:45: 21000000 INFO @ Mon, 10 Aug 2020 15:18:48: 27000000 INFO @ Mon, 10 Aug 2020 15:18:51: 17000000 INFO @ Mon, 10 Aug 2020 15:18:52: 22000000 INFO @ Mon, 10 Aug 2020 15:18:55: 28000000 INFO @ Mon, 10 Aug 2020 15:18:58: 18000000 INFO @ Mon, 10 Aug 2020 15:18:58: 23000000 INFO @ Mon, 10 Aug 2020 15:19:02: 29000000 INFO @ Mon, 10 Aug 2020 15:19:04: 19000000 INFO @ Mon, 10 Aug 2020 15:19:05: 24000000 INFO @ Mon, 10 Aug 2020 15:19:08: 30000000 INFO @ Mon, 10 Aug 2020 15:19:11: 20000000 INFO @ Mon, 10 Aug 2020 15:19:11: 25000000 INFO @ Mon, 10 Aug 2020 15:19:15: 31000000 INFO @ Mon, 10 Aug 2020 15:19:18: 21000000 INFO @ Mon, 10 Aug 2020 15:19:18: 26000000 INFO @ Mon, 10 Aug 2020 15:19:22: 32000000 INFO @ Mon, 10 Aug 2020 15:19:24: 22000000 INFO @ Mon, 10 Aug 2020 15:19:25: 27000000 INFO @ Mon, 10 Aug 2020 15:19:29: 33000000 INFO @ Mon, 10 Aug 2020 15:19:30: 23000000 INFO @ Mon, 10 Aug 2020 15:19:31: 28000000 INFO @ Mon, 10 Aug 2020 15:19:35: 34000000 INFO @ Mon, 10 Aug 2020 15:19:37: 24000000 INFO @ Mon, 10 Aug 2020 15:19:38: 29000000 INFO @ Mon, 10 Aug 2020 15:19:41: 35000000 INFO @ Mon, 10 Aug 2020 15:19:43: 25000000 INFO @ Mon, 10 Aug 2020 15:19:44: 30000000 INFO @ Mon, 10 Aug 2020 15:19:48: 36000000 INFO @ Mon, 10 Aug 2020 15:19:49: 26000000 INFO @ Mon, 10 Aug 2020 15:19:50: 31000000 INFO @ Mon, 10 Aug 2020 15:19:54: 37000000 INFO @ Mon, 10 Aug 2020 15:19:56: 27000000 INFO @ Mon, 10 Aug 2020 15:19:57: 32000000 INFO @ Mon, 10 Aug 2020 15:20:01: 38000000 INFO @ Mon, 10 Aug 2020 15:20:02: 28000000 INFO @ Mon, 10 Aug 2020 15:20:03: 33000000 INFO @ Mon, 10 Aug 2020 15:20:07: 39000000 INFO @ Mon, 10 Aug 2020 15:20:09: 29000000 INFO @ Mon, 10 Aug 2020 15:20:10: 34000000 INFO @ Mon, 10 Aug 2020 15:20:14: 40000000 INFO @ Mon, 10 Aug 2020 15:20:15: 30000000 INFO @ Mon, 10 Aug 2020 15:20:16: 35000000 INFO @ Mon, 10 Aug 2020 15:20:20: 41000000 INFO @ Mon, 10 Aug 2020 15:20:22: 31000000 INFO @ Mon, 10 Aug 2020 15:20:22: 36000000 INFO @ Mon, 10 Aug 2020 15:20:27: 42000000 INFO @ Mon, 10 Aug 2020 15:20:28: 32000000 INFO @ Mon, 10 Aug 2020 15:20:29: 37000000 INFO @ Mon, 10 Aug 2020 15:20:33: 43000000 INFO @ Mon, 10 Aug 2020 15:20:34: 33000000 INFO @ Mon, 10 Aug 2020 15:20:35: 38000000 INFO @ Mon, 10 Aug 2020 15:20:40: 44000000 INFO @ Mon, 10 Aug 2020 15:20:40: 34000000 INFO @ Mon, 10 Aug 2020 15:20:41: 39000000 INFO @ Mon, 10 Aug 2020 15:20:46: 45000000 INFO @ Mon, 10 Aug 2020 15:20:46: 35000000 INFO @ Mon, 10 Aug 2020 15:20:47: 40000000 INFO @ Mon, 10 Aug 2020 15:20:53: 46000000 INFO @ Mon, 10 Aug 2020 15:20:53: 36000000 INFO @ Mon, 10 Aug 2020 15:20:54: 41000000 INFO @ Mon, 10 Aug 2020 15:20:59: 37000000 INFO @ Mon, 10 Aug 2020 15:20:59: 47000000 INFO @ Mon, 10 Aug 2020 15:21:00: 42000000 INFO @ Mon, 10 Aug 2020 15:21:05: 38000000 INFO @ Mon, 10 Aug 2020 15:21:05: 48000000 INFO @ Mon, 10 Aug 2020 15:21:06: 43000000 INFO @ Mon, 10 Aug 2020 15:21:11: 39000000 INFO @ Mon, 10 Aug 2020 15:21:12: 49000000 INFO @ Mon, 10 Aug 2020 15:21:12: 44000000 INFO @ Mon, 10 Aug 2020 15:21:17: 40000000 INFO @ Mon, 10 Aug 2020 15:21:18: 50000000 INFO @ Mon, 10 Aug 2020 15:21:18: 45000000 INFO @ Mon, 10 Aug 2020 15:21:23: 41000000 INFO @ Mon, 10 Aug 2020 15:21:24: 46000000 INFO @ Mon, 10 Aug 2020 15:21:24: 51000000 INFO @ Mon, 10 Aug 2020 15:21:29: 42000000 INFO @ Mon, 10 Aug 2020 15:21:30: 47000000 INFO @ Mon, 10 Aug 2020 15:21:31: 52000000 INFO @ Mon, 10 Aug 2020 15:21:36: 43000000 INFO @ Mon, 10 Aug 2020 15:21:37: 48000000 INFO @ Mon, 10 Aug 2020 15:21:37: 53000000 INFO @ Mon, 10 Aug 2020 15:21:42: 44000000 INFO @ Mon, 10 Aug 2020 15:21:43: 49000000 INFO @ Mon, 10 Aug 2020 15:21:43: 54000000 INFO @ Mon, 10 Aug 2020 15:21:48: 45000000 INFO @ Mon, 10 Aug 2020 15:21:49: 50000000 INFO @ Mon, 10 Aug 2020 15:21:49: 55000000 INFO @ Mon, 10 Aug 2020 15:21:54: 46000000 INFO @ Mon, 10 Aug 2020 15:21:55: 51000000 INFO @ Mon, 10 Aug 2020 15:21:56: 56000000 INFO @ Mon, 10 Aug 2020 15:22:00: 47000000 INFO @ Mon, 10 Aug 2020 15:22:01: 52000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 10 Aug 2020 15:22:02: 57000000 INFO @ Mon, 10 Aug 2020 15:22:06: 48000000 INFO @ Mon, 10 Aug 2020 15:22:07: 53000000 INFO @ Mon, 10 Aug 2020 15:22:08: 58000000 INFO @ Mon, 10 Aug 2020 15:22:09: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 15:22:09: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 15:22:09: #1 total tags in treatment: 58121713 INFO @ Mon, 10 Aug 2020 15:22:09: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 15:22:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 15:22:10: #1 tags after filtering in treatment: 58121661 INFO @ Mon, 10 Aug 2020 15:22:10: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 15:22:10: #1 finished! INFO @ Mon, 10 Aug 2020 15:22:10: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 15:22:10: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 15:22:12: 49000000 INFO @ Mon, 10 Aug 2020 15:22:13: 54000000 INFO @ Mon, 10 Aug 2020 15:22:15: #2 number of paired peaks: 5555 INFO @ Mon, 10 Aug 2020 15:22:15: start model_add_line... INFO @ Mon, 10 Aug 2020 15:22:15: start X-correlation... INFO @ Mon, 10 Aug 2020 15:22:15: end of X-cor INFO @ Mon, 10 Aug 2020 15:22:15: #2 finished! INFO @ Mon, 10 Aug 2020 15:22:15: #2 predicted fragment length is 53 bps INFO @ Mon, 10 Aug 2020 15:22:15: #2 alternative fragment length(s) may be 53 bps INFO @ Mon, 10 Aug 2020 15:22:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.05_model.r WARNING @ Mon, 10 Aug 2020 15:22:15: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 15:22:15: #2 You may need to consider one of the other alternative d(s): 53 WARNING @ Mon, 10 Aug 2020 15:22:15: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 15:22:15: #3 Call peaks... INFO @ Mon, 10 Aug 2020 15:22:15: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 15:22:18: 50000000 INFO @ Mon, 10 Aug 2020 15:22:19: 55000000 INFO @ Mon, 10 Aug 2020 15:22:24: 51000000 INFO @ Mon, 10 Aug 2020 15:22:25: 56000000 INFO @ Mon, 10 Aug 2020 15:22:30: 52000000 INFO @ Mon, 10 Aug 2020 15:22:31: 57000000 INFO @ Mon, 10 Aug 2020 15:22:36: 53000000 INFO @ Mon, 10 Aug 2020 15:22:38: 58000000 INFO @ Mon, 10 Aug 2020 15:22:39: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 15:22:39: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 15:22:39: #1 total tags in treatment: 58121713 INFO @ Mon, 10 Aug 2020 15:22:39: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 15:22:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 15:22:40: #1 tags after filtering in treatment: 58121661 INFO @ Mon, 10 Aug 2020 15:22:40: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 15:22:40: #1 finished! INFO @ Mon, 10 Aug 2020 15:22:40: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 15:22:40: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 15:22:42: 54000000 INFO @ Mon, 10 Aug 2020 15:22:44: #2 number of paired peaks: 5555 INFO @ Mon, 10 Aug 2020 15:22:44: start model_add_line... INFO @ Mon, 10 Aug 2020 15:22:45: start X-correlation... INFO @ Mon, 10 Aug 2020 15:22:45: end of X-cor INFO @ Mon, 10 Aug 2020 15:22:45: #2 finished! INFO @ Mon, 10 Aug 2020 15:22:45: #2 predicted fragment length is 53 bps INFO @ Mon, 10 Aug 2020 15:22:45: #2 alternative fragment length(s) may be 53 bps INFO @ Mon, 10 Aug 2020 15:22:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.10_model.r WARNING @ Mon, 10 Aug 2020 15:22:45: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 15:22:45: #2 You may need to consider one of the other alternative d(s): 53 WARNING @ Mon, 10 Aug 2020 15:22:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 15:22:45: #3 Call peaks... INFO @ Mon, 10 Aug 2020 15:22:45: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 15:22:48: 55000000 INFO @ Mon, 10 Aug 2020 15:22:54: 56000000 INFO @ Mon, 10 Aug 2020 15:22:59: 57000000 INFO @ Mon, 10 Aug 2020 15:23:05: 58000000 INFO @ Mon, 10 Aug 2020 15:23:06: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 15:23:06: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 15:23:06: #1 total tags in treatment: 58121713 INFO @ Mon, 10 Aug 2020 15:23:06: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 15:23:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 15:23:07: #1 tags after filtering in treatment: 58121661 INFO @ Mon, 10 Aug 2020 15:23:07: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 15:23:07: #1 finished! INFO @ Mon, 10 Aug 2020 15:23:07: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 15:23:07: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 15:23:11: #2 number of paired peaks: 5555 INFO @ Mon, 10 Aug 2020 15:23:11: start model_add_line... INFO @ Mon, 10 Aug 2020 15:23:12: start X-correlation... INFO @ Mon, 10 Aug 2020 15:23:12: end of X-cor INFO @ Mon, 10 Aug 2020 15:23:12: #2 finished! INFO @ Mon, 10 Aug 2020 15:23:12: #2 predicted fragment length is 53 bps INFO @ Mon, 10 Aug 2020 15:23:12: #2 alternative fragment length(s) may be 53 bps INFO @ Mon, 10 Aug 2020 15:23:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.20_model.r WARNING @ Mon, 10 Aug 2020 15:23:12: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 15:23:12: #2 You may need to consider one of the other alternative d(s): 53 WARNING @ Mon, 10 Aug 2020 15:23:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 15:23:12: #3 Call peaks... INFO @ Mon, 10 Aug 2020 15:23:12: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 15:24:17: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Mon, 10 Aug 2020 15:24:47: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 15:25:14: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 15:25:22: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.05_peaks.xls INFO @ Mon, 10 Aug 2020 15:25:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.05_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 15:25:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.05_summits.bed INFO @ Mon, 10 Aug 2020 15:25:22: Done! pass1 - making usageList (71 chroms): 1 millis pass2 - checking and writing primary data (5329 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 15:25:51: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.10_peaks.xls INFO @ Mon, 10 Aug 2020 15:25:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.10_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 15:25:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.10_summits.bed INFO @ Mon, 10 Aug 2020 15:25:51: Done! pass1 - making usageList (50 chroms): 1 millis pass2 - checking and writing primary data (2203 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 15:26:19: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.20_peaks.xls INFO @ Mon, 10 Aug 2020 15:26:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.20_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 15:26:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047630/SRX8047630.20_summits.bed INFO @ Mon, 10 Aug 2020 15:26:19: Done! pass1 - making usageList (38 chroms): 1 millis pass2 - checking and writing primary data (855 records, 4 fields): 3 millis CompletedMACS2peakCalling