Job ID = 8184543 SRX = SRX8047602 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-08-10T04:20:39 prefetch.2.10.7: 1) Downloading 'SRR11471326'... 2020-08-10T04:20:39 prefetch.2.10.7: Downloading via HTTPS... 2020-08-10T04:24:04 prefetch.2.10.7: HTTPS download succeed 2020-08-10T04:24:04 prefetch.2.10.7: 1) 'SRR11471326' was downloaded successfully Read 59961367 spots for SRR11471326/SRR11471326.sra Written 59961367 spots for SRR11471326/SRR11471326.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:02 Multiseed full-index search: 00:45:32 59961367 reads; of these: 59961367 (100.00%) were unpaired; of these: 1466963 (2.45%) aligned 0 times 44819037 (74.75%) aligned exactly 1 time 13675367 (22.81%) aligned >1 times 97.55% overall alignment rate Time searching: 00:45:37 Overall time: 00:45:38 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 7353736 / 58494404 = 0.1257 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 14:28:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 14:28:28: #1 read tag files... INFO @ Mon, 10 Aug 2020 14:28:28: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 14:28:34: 1000000 INFO @ Mon, 10 Aug 2020 14:28:40: 2000000 INFO @ Mon, 10 Aug 2020 14:28:45: 3000000 INFO @ Mon, 10 Aug 2020 14:28:51: 4000000 INFO @ Mon, 10 Aug 2020 14:28:56: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 14:28:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 14:28:58: #1 read tag files... INFO @ Mon, 10 Aug 2020 14:28:58: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 14:29:02: 6000000 INFO @ Mon, 10 Aug 2020 14:29:05: 1000000 INFO @ Mon, 10 Aug 2020 14:29:09: 7000000 INFO @ Mon, 10 Aug 2020 14:29:11: 2000000 INFO @ Mon, 10 Aug 2020 14:29:15: 8000000 INFO @ Mon, 10 Aug 2020 14:29:17: 3000000 INFO @ Mon, 10 Aug 2020 14:29:21: 9000000 INFO @ Mon, 10 Aug 2020 14:29:24: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 14:29:28: 10000000 INFO @ Mon, 10 Aug 2020 14:29:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 14:29:28: #1 read tag files... INFO @ Mon, 10 Aug 2020 14:29:28: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 14:29:30: 5000000 INFO @ Mon, 10 Aug 2020 14:29:34: 11000000 INFO @ Mon, 10 Aug 2020 14:29:35: 1000000 INFO @ Mon, 10 Aug 2020 14:29:37: 6000000 INFO @ Mon, 10 Aug 2020 14:29:41: 12000000 INFO @ Mon, 10 Aug 2020 14:29:41: 2000000 INFO @ Mon, 10 Aug 2020 14:29:43: 7000000 INFO @ Mon, 10 Aug 2020 14:29:47: 13000000 INFO @ Mon, 10 Aug 2020 14:29:48: 3000000 INFO @ Mon, 10 Aug 2020 14:29:49: 8000000 INFO @ Mon, 10 Aug 2020 14:29:53: 14000000 INFO @ Mon, 10 Aug 2020 14:29:54: 4000000 INFO @ Mon, 10 Aug 2020 14:29:56: 9000000 INFO @ Mon, 10 Aug 2020 14:30:00: 15000000 INFO @ Mon, 10 Aug 2020 14:30:00: 5000000 INFO @ Mon, 10 Aug 2020 14:30:02: 10000000 INFO @ Mon, 10 Aug 2020 14:30:06: 16000000 INFO @ Mon, 10 Aug 2020 14:30:07: 6000000 INFO @ Mon, 10 Aug 2020 14:30:09: 11000000 INFO @ Mon, 10 Aug 2020 14:30:13: 17000000 INFO @ Mon, 10 Aug 2020 14:30:13: 7000000 INFO @ Mon, 10 Aug 2020 14:30:15: 12000000 INFO @ Mon, 10 Aug 2020 14:30:19: 18000000 INFO @ Mon, 10 Aug 2020 14:30:20: 8000000 INFO @ Mon, 10 Aug 2020 14:30:22: 13000000 INFO @ Mon, 10 Aug 2020 14:30:26: 19000000 INFO @ Mon, 10 Aug 2020 14:30:26: 9000000 INFO @ Mon, 10 Aug 2020 14:30:28: 14000000 INFO @ Mon, 10 Aug 2020 14:30:32: 20000000 INFO @ Mon, 10 Aug 2020 14:30:33: 10000000 INFO @ Mon, 10 Aug 2020 14:30:35: 15000000 INFO @ Mon, 10 Aug 2020 14:30:38: 21000000 INFO @ Mon, 10 Aug 2020 14:30:39: 11000000 INFO @ Mon, 10 Aug 2020 14:30:41: 16000000 INFO @ Mon, 10 Aug 2020 14:30:45: 22000000 INFO @ Mon, 10 Aug 2020 14:30:46: 12000000 INFO @ Mon, 10 Aug 2020 14:30:48: 17000000 INFO @ Mon, 10 Aug 2020 14:30:51: 23000000 INFO @ Mon, 10 Aug 2020 14:30:52: 13000000 INFO @ Mon, 10 Aug 2020 14:30:54: 18000000 INFO @ Mon, 10 Aug 2020 14:30:58: 24000000 INFO @ Mon, 10 Aug 2020 14:30:59: 14000000 INFO @ Mon, 10 Aug 2020 14:31:01: 19000000 INFO @ Mon, 10 Aug 2020 14:31:04: 25000000 INFO @ Mon, 10 Aug 2020 14:31:05: 15000000 INFO @ Mon, 10 Aug 2020 14:31:07: 20000000 INFO @ Mon, 10 Aug 2020 14:31:11: 26000000 INFO @ Mon, 10 Aug 2020 14:31:11: 16000000 INFO @ Mon, 10 Aug 2020 14:31:14: 21000000 INFO @ Mon, 10 Aug 2020 14:31:17: 27000000 INFO @ Mon, 10 Aug 2020 14:31:18: 17000000 INFO @ Mon, 10 Aug 2020 14:31:20: 22000000 INFO @ Mon, 10 Aug 2020 14:31:24: 28000000 INFO @ Mon, 10 Aug 2020 14:31:24: 18000000 INFO @ Mon, 10 Aug 2020 14:31:27: 23000000 INFO @ Mon, 10 Aug 2020 14:31:30: 29000000 INFO @ Mon, 10 Aug 2020 14:31:31: 19000000 INFO @ Mon, 10 Aug 2020 14:31:33: 24000000 INFO @ Mon, 10 Aug 2020 14:31:36: 30000000 INFO @ Mon, 10 Aug 2020 14:31:37: 20000000 INFO @ Mon, 10 Aug 2020 14:31:40: 25000000 INFO @ Mon, 10 Aug 2020 14:31:43: 31000000 INFO @ Mon, 10 Aug 2020 14:31:44: 21000000 INFO @ Mon, 10 Aug 2020 14:31:46: 26000000 INFO @ Mon, 10 Aug 2020 14:31:49: 32000000 INFO @ Mon, 10 Aug 2020 14:31:50: 22000000 INFO @ Mon, 10 Aug 2020 14:31:53: 27000000 INFO @ Mon, 10 Aug 2020 14:31:56: 33000000 INFO @ Mon, 10 Aug 2020 14:31:57: 23000000 INFO @ Mon, 10 Aug 2020 14:31:59: 28000000 INFO @ Mon, 10 Aug 2020 14:32:02: 34000000 INFO @ Mon, 10 Aug 2020 14:32:03: 24000000 INFO @ Mon, 10 Aug 2020 14:32:06: 29000000 INFO @ Mon, 10 Aug 2020 14:32:09: 35000000 INFO @ Mon, 10 Aug 2020 14:32:09: 25000000 INFO @ Mon, 10 Aug 2020 14:32:13: 30000000 INFO @ Mon, 10 Aug 2020 14:32:15: 36000000 INFO @ Mon, 10 Aug 2020 14:32:16: 26000000 INFO @ Mon, 10 Aug 2020 14:32:19: 31000000 INFO @ Mon, 10 Aug 2020 14:32:22: 37000000 INFO @ Mon, 10 Aug 2020 14:32:22: 27000000 INFO @ Mon, 10 Aug 2020 14:32:26: 32000000 INFO @ Mon, 10 Aug 2020 14:32:28: 38000000 INFO @ Mon, 10 Aug 2020 14:32:29: 28000000 INFO @ Mon, 10 Aug 2020 14:32:32: 33000000 INFO @ Mon, 10 Aug 2020 14:32:35: 39000000 INFO @ Mon, 10 Aug 2020 14:32:35: 29000000 INFO @ Mon, 10 Aug 2020 14:32:39: 34000000 INFO @ Mon, 10 Aug 2020 14:32:41: 40000000 INFO @ Mon, 10 Aug 2020 14:32:42: 30000000 INFO @ Mon, 10 Aug 2020 14:32:45: 35000000 INFO @ Mon, 10 Aug 2020 14:32:48: 41000000 INFO @ Mon, 10 Aug 2020 14:32:48: 31000000 INFO @ Mon, 10 Aug 2020 14:32:52: 36000000 INFO @ Mon, 10 Aug 2020 14:32:54: 42000000 INFO @ Mon, 10 Aug 2020 14:32:55: 32000000 INFO @ Mon, 10 Aug 2020 14:32:58: 37000000 INFO @ Mon, 10 Aug 2020 14:33:01: 43000000 INFO @ Mon, 10 Aug 2020 14:33:01: 33000000 INFO @ Mon, 10 Aug 2020 14:33:04: 38000000 INFO @ Mon, 10 Aug 2020 14:33:07: 44000000 INFO @ Mon, 10 Aug 2020 14:33:08: 34000000 INFO @ Mon, 10 Aug 2020 14:33:11: 39000000 INFO @ Mon, 10 Aug 2020 14:33:13: 45000000 INFO @ Mon, 10 Aug 2020 14:33:14: 35000000 INFO @ Mon, 10 Aug 2020 14:33:17: 40000000 INFO @ Mon, 10 Aug 2020 14:33:20: 46000000 INFO @ Mon, 10 Aug 2020 14:33:20: 36000000 INFO @ Mon, 10 Aug 2020 14:33:24: 41000000 INFO @ Mon, 10 Aug 2020 14:33:26: 47000000 INFO @ Mon, 10 Aug 2020 14:33:27: 37000000 INFO @ Mon, 10 Aug 2020 14:33:30: 42000000 INFO @ Mon, 10 Aug 2020 14:33:33: 48000000 INFO @ Mon, 10 Aug 2020 14:33:33: 38000000 INFO @ Mon, 10 Aug 2020 14:33:37: 43000000 INFO @ Mon, 10 Aug 2020 14:33:39: 49000000 INFO @ Mon, 10 Aug 2020 14:33:40: 39000000 INFO @ Mon, 10 Aug 2020 14:33:43: 44000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 10 Aug 2020 14:33:46: 50000000 INFO @ Mon, 10 Aug 2020 14:33:46: 40000000 INFO @ Mon, 10 Aug 2020 14:33:50: 45000000 INFO @ Mon, 10 Aug 2020 14:33:52: 51000000 INFO @ Mon, 10 Aug 2020 14:33:52: 41000000 INFO @ Mon, 10 Aug 2020 14:33:53: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 14:33:53: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 14:33:53: #1 total tags in treatment: 51140668 INFO @ Mon, 10 Aug 2020 14:33:53: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 14:33:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 14:33:54: #1 tags after filtering in treatment: 51140586 INFO @ Mon, 10 Aug 2020 14:33:54: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 14:33:54: #1 finished! INFO @ Mon, 10 Aug 2020 14:33:54: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 14:33:54: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 14:33:56: 46000000 INFO @ Mon, 10 Aug 2020 14:33:59: 42000000 INFO @ Mon, 10 Aug 2020 14:33:59: #2 number of paired peaks: 26318 INFO @ Mon, 10 Aug 2020 14:33:59: start model_add_line... INFO @ Mon, 10 Aug 2020 14:33:59: start X-correlation... INFO @ Mon, 10 Aug 2020 14:33:59: end of X-cor INFO @ Mon, 10 Aug 2020 14:33:59: #2 finished! INFO @ Mon, 10 Aug 2020 14:33:59: #2 predicted fragment length is 116 bps INFO @ Mon, 10 Aug 2020 14:33:59: #2 alternative fragment length(s) may be 116 bps INFO @ Mon, 10 Aug 2020 14:33:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.05_model.r INFO @ Mon, 10 Aug 2020 14:33:59: #3 Call peaks... INFO @ Mon, 10 Aug 2020 14:33:59: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 14:34:02: 47000000 INFO @ Mon, 10 Aug 2020 14:34:05: 43000000 INFO @ Mon, 10 Aug 2020 14:34:09: 48000000 INFO @ Mon, 10 Aug 2020 14:34:11: 44000000 INFO @ Mon, 10 Aug 2020 14:34:15: 49000000 INFO @ Mon, 10 Aug 2020 14:34:17: 45000000 INFO @ Mon, 10 Aug 2020 14:34:21: 50000000 INFO @ Mon, 10 Aug 2020 14:34:24: 46000000 INFO @ Mon, 10 Aug 2020 14:34:28: 51000000 INFO @ Mon, 10 Aug 2020 14:34:29: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 14:34:29: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 14:34:29: #1 total tags in treatment: 51140668 INFO @ Mon, 10 Aug 2020 14:34:29: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 14:34:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 14:34:30: 47000000 INFO @ Mon, 10 Aug 2020 14:34:30: #1 tags after filtering in treatment: 51140586 INFO @ Mon, 10 Aug 2020 14:34:30: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 14:34:30: #1 finished! INFO @ Mon, 10 Aug 2020 14:34:30: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 14:34:30: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 14:34:35: #2 number of paired peaks: 26318 INFO @ Mon, 10 Aug 2020 14:34:35: start model_add_line... INFO @ Mon, 10 Aug 2020 14:34:35: start X-correlation... INFO @ Mon, 10 Aug 2020 14:34:35: end of X-cor INFO @ Mon, 10 Aug 2020 14:34:35: #2 finished! INFO @ Mon, 10 Aug 2020 14:34:35: #2 predicted fragment length is 116 bps INFO @ Mon, 10 Aug 2020 14:34:35: #2 alternative fragment length(s) may be 116 bps INFO @ Mon, 10 Aug 2020 14:34:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.10_model.r INFO @ Mon, 10 Aug 2020 14:34:35: #3 Call peaks... INFO @ Mon, 10 Aug 2020 14:34:35: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 14:34:36: 48000000 INFO @ Mon, 10 Aug 2020 14:34:42: 49000000 INFO @ Mon, 10 Aug 2020 14:34:47: 50000000 INFO @ Mon, 10 Aug 2020 14:34:53: 51000000 INFO @ Mon, 10 Aug 2020 14:34:54: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 14:34:54: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 14:34:54: #1 total tags in treatment: 51140668 INFO @ Mon, 10 Aug 2020 14:34:54: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 14:34:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 14:34:55: #1 tags after filtering in treatment: 51140586 INFO @ Mon, 10 Aug 2020 14:34:55: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 14:34:55: #1 finished! INFO @ Mon, 10 Aug 2020 14:34:55: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 14:34:55: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 14:35:00: #2 number of paired peaks: 26318 INFO @ Mon, 10 Aug 2020 14:35:00: start model_add_line... INFO @ Mon, 10 Aug 2020 14:35:01: start X-correlation... INFO @ Mon, 10 Aug 2020 14:35:01: end of X-cor INFO @ Mon, 10 Aug 2020 14:35:01: #2 finished! INFO @ Mon, 10 Aug 2020 14:35:01: #2 predicted fragment length is 116 bps INFO @ Mon, 10 Aug 2020 14:35:01: #2 alternative fragment length(s) may be 116 bps INFO @ Mon, 10 Aug 2020 14:35:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.20_model.r INFO @ Mon, 10 Aug 2020 14:35:01: #3 Call peaks... INFO @ Mon, 10 Aug 2020 14:35:01: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Mon, 10 Aug 2020 14:35:58: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 14:36:32: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 14:36:57: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 14:37:03: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.05_peaks.xls INFO @ Mon, 10 Aug 2020 14:37:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.05_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 14:37:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.05_summits.bed INFO @ Mon, 10 Aug 2020 14:37:03: Done! pass1 - making usageList (116 chroms): 4 millis pass2 - checking and writing primary data (23442 records, 4 fields): 25 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 14:37:37: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.10_peaks.xls INFO @ Mon, 10 Aug 2020 14:37:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.10_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 14:37:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.10_summits.bed INFO @ Mon, 10 Aug 2020 14:37:38: Done! pass1 - making usageList (80 chroms): 2 millis pass2 - checking and writing primary data (12123 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 14:38:01: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.20_peaks.xls INFO @ Mon, 10 Aug 2020 14:38:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.20_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 14:38:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047602/SRX8047602.20_summits.bed INFO @ Mon, 10 Aug 2020 14:38:01: Done! pass1 - making usageList (53 chroms): 1 millis pass2 - checking and writing primary data (4576 records, 4 fields): 7 millis CompletedMACS2peakCalling