Job ID = 11632731 sra ファイルのダウンロード中... Completed: 1968933K bytes transferred in 20 seconds (775228K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 115002808 spots for /home/okishinya/chipatlas/results/rn6/SRX4497201/SRR7633471.sra Written 115002808 spots for /home/okishinya/chipatlas/results/rn6/SRX4497201/SRR7633471.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:34:31 115002808 reads; of these: 115002808 (100.00%) were unpaired; of these: 4653665 (4.05%) aligned 0 times 78534891 (68.29%) aligned exactly 1 time 31814252 (27.66%) aligned >1 times 95.95% overall alignment rate Time searching: 01:34:34 Overall time: 01:34:34 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 48 files... [bam_rmdupse_core] 37581332 / 110349143 = 0.3406 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 15 Feb 2019 08:46:07: # Command line: callpeak -t SRX4497201.bam -f BAM -g 2.15e9 -n SRX4497201.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX4497201.10 # format = BAM # ChIP-seq file = ['SRX4497201.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 08:46:07: # Command line: callpeak -t SRX4497201.bam -f BAM -g 2.15e9 -n SRX4497201.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX4497201.05 # format = BAM # ChIP-seq file = ['SRX4497201.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 08:46:07: #1 read tag files... INFO @ Fri, 15 Feb 2019 08:46:07: #1 read tag files... INFO @ Fri, 15 Feb 2019 08:46:07: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 08:46:07: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 08:46:07: # Command line: callpeak -t SRX4497201.bam -f BAM -g 2.15e9 -n SRX4497201.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX4497201.20 # format = BAM # ChIP-seq file = ['SRX4497201.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 08:46:07: #1 read tag files... INFO @ Fri, 15 Feb 2019 08:46:07: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 08:46:13: 1000000 INFO @ Fri, 15 Feb 2019 08:46:13: 1000000 INFO @ Fri, 15 Feb 2019 08:46:13: 1000000 INFO @ Fri, 15 Feb 2019 08:46:19: 2000000 INFO @ Fri, 15 Feb 2019 08:46:19: 2000000 INFO @ Fri, 15 Feb 2019 08:46:19: 2000000 INFO @ Fri, 15 Feb 2019 08:46:25: 3000000 INFO @ Fri, 15 Feb 2019 08:46:25: 3000000 INFO @ Fri, 15 Feb 2019 08:46:25: 3000000 INFO @ Fri, 15 Feb 2019 08:46:31: 4000000 INFO @ Fri, 15 Feb 2019 08:46:32: 4000000 INFO @ Fri, 15 Feb 2019 08:46:32: 4000000 INFO @ Fri, 15 Feb 2019 08:46:38: 5000000 INFO @ Fri, 15 Feb 2019 08:46:38: 5000000 INFO @ Fri, 15 Feb 2019 08:46:38: 5000000 INFO @ Fri, 15 Feb 2019 08:46:44: 6000000 INFO @ Fri, 15 Feb 2019 08:46:44: 6000000 INFO @ Fri, 15 Feb 2019 08:46:45: 6000000 INFO @ Fri, 15 Feb 2019 08:46:50: 7000000 INFO @ Fri, 15 Feb 2019 08:46:50: 7000000 INFO @ Fri, 15 Feb 2019 08:46:52: 7000000 INFO @ Fri, 15 Feb 2019 08:46:56: 8000000 INFO @ Fri, 15 Feb 2019 08:46:56: 8000000 INFO @ Fri, 15 Feb 2019 08:46:58: 8000000 INFO @ Fri, 15 Feb 2019 08:47:02: 9000000 INFO @ Fri, 15 Feb 2019 08:47:02: 9000000 INFO @ Fri, 15 Feb 2019 08:47:05: 9000000 INFO @ Fri, 15 Feb 2019 08:47:08: 10000000 INFO @ Fri, 15 Feb 2019 08:47:09: 10000000 INFO @ Fri, 15 Feb 2019 08:47:11: 10000000 INFO @ Fri, 15 Feb 2019 08:47:14: 11000000 INFO @ Fri, 15 Feb 2019 08:47:15: 11000000 INFO @ Fri, 15 Feb 2019 08:47:17: 11000000 INFO @ Fri, 15 Feb 2019 08:47:21: 12000000 INFO @ Fri, 15 Feb 2019 08:47:21: 12000000 INFO @ Fri, 15 Feb 2019 08:47:23: 12000000 INFO @ Fri, 15 Feb 2019 08:47:27: 13000000 INFO @ Fri, 15 Feb 2019 08:47:28: 13000000 INFO @ Fri, 15 Feb 2019 08:47:29: 13000000 INFO @ Fri, 15 Feb 2019 08:47:33: 14000000 INFO @ Fri, 15 Feb 2019 08:47:34: 14000000 INFO @ Fri, 15 Feb 2019 08:47:36: 14000000 INFO @ Fri, 15 Feb 2019 08:47:39: 15000000 INFO @ Fri, 15 Feb 2019 08:47:40: 15000000 INFO @ Fri, 15 Feb 2019 08:47:42: 15000000 INFO @ Fri, 15 Feb 2019 08:47:45: 16000000 INFO @ Fri, 15 Feb 2019 08:47:46: 16000000 INFO @ Fri, 15 Feb 2019 08:47:48: 16000000 INFO @ Fri, 15 Feb 2019 08:47:52: 17000000 INFO @ Fri, 15 Feb 2019 08:47:53: 17000000 INFO @ Fri, 15 Feb 2019 08:47:54: 17000000 INFO @ Fri, 15 Feb 2019 08:47:58: 18000000 INFO @ Fri, 15 Feb 2019 08:47:59: 18000000 INFO @ Fri, 15 Feb 2019 08:48:00: 18000000 INFO @ Fri, 15 Feb 2019 08:48:04: 19000000 INFO @ Fri, 15 Feb 2019 08:48:05: 19000000 INFO @ Fri, 15 Feb 2019 08:48:06: 19000000 INFO @ Fri, 15 Feb 2019 08:48:10: 20000000 INFO @ Fri, 15 Feb 2019 08:48:11: 20000000 INFO @ Fri, 15 Feb 2019 08:48:12: 20000000 INFO @ Fri, 15 Feb 2019 08:48:16: 21000000 INFO @ Fri, 15 Feb 2019 08:48:18: 21000000 INFO @ Fri, 15 Feb 2019 08:48:18: 21000000 INFO @ Fri, 15 Feb 2019 08:48:22: 22000000 INFO @ Fri, 15 Feb 2019 08:48:24: 22000000 INFO @ Fri, 15 Feb 2019 08:48:24: 22000000 INFO @ Fri, 15 Feb 2019 08:48:29: 23000000 INFO @ Fri, 15 Feb 2019 08:48:30: 23000000 INFO @ Fri, 15 Feb 2019 08:48:31: 23000000 INFO @ Fri, 15 Feb 2019 08:48:35: 24000000 INFO @ Fri, 15 Feb 2019 08:48:36: 24000000 INFO @ Fri, 15 Feb 2019 08:48:37: 24000000 INFO @ Fri, 15 Feb 2019 08:48:41: 25000000 INFO @ Fri, 15 Feb 2019 08:48:43: 25000000 INFO @ Fri, 15 Feb 2019 08:48:44: 25000000 INFO @ Fri, 15 Feb 2019 08:48:47: 26000000 INFO @ Fri, 15 Feb 2019 08:48:49: 26000000 INFO @ Fri, 15 Feb 2019 08:48:51: 26000000 INFO @ Fri, 15 Feb 2019 08:48:53: 27000000 INFO @ Fri, 15 Feb 2019 08:48:55: 27000000 INFO @ Fri, 15 Feb 2019 08:48:57: 27000000 INFO @ Fri, 15 Feb 2019 08:48:59: 28000000 INFO @ Fri, 15 Feb 2019 08:49:02: 28000000 INFO @ Fri, 15 Feb 2019 08:49:03: 28000000 INFO @ Fri, 15 Feb 2019 08:49:06: 29000000 INFO @ Fri, 15 Feb 2019 08:49:08: 29000000 INFO @ Fri, 15 Feb 2019 08:49:09: 29000000 INFO @ Fri, 15 Feb 2019 08:49:12: 30000000 INFO @ Fri, 15 Feb 2019 08:49:14: 30000000 INFO @ Fri, 15 Feb 2019 08:49:15: 30000000 INFO @ Fri, 15 Feb 2019 08:49:18: 31000000 INFO @ Fri, 15 Feb 2019 08:49:20: 31000000 INFO @ Fri, 15 Feb 2019 08:49:22: 31000000 INFO @ Fri, 15 Feb 2019 08:49:24: 32000000 INFO @ Fri, 15 Feb 2019 08:49:27: 32000000 INFO @ Fri, 15 Feb 2019 08:49:28: 32000000 INFO @ Fri, 15 Feb 2019 08:49:30: 33000000 INFO @ Fri, 15 Feb 2019 08:49:33: 33000000 INFO @ Fri, 15 Feb 2019 08:49:34: 33000000 INFO @ Fri, 15 Feb 2019 08:49:36: 34000000 INFO @ Fri, 15 Feb 2019 08:49:39: 34000000 INFO @ Fri, 15 Feb 2019 08:49:40: 34000000 INFO @ Fri, 15 Feb 2019 08:49:43: 35000000 INFO @ Fri, 15 Feb 2019 08:49:45: 35000000 INFO @ Fri, 15 Feb 2019 08:49:46: 35000000 INFO @ Fri, 15 Feb 2019 08:49:49: 36000000 INFO @ Fri, 15 Feb 2019 08:49:51: 36000000 INFO @ Fri, 15 Feb 2019 08:49:52: 36000000 INFO @ Fri, 15 Feb 2019 08:49:55: 37000000 INFO @ Fri, 15 Feb 2019 08:49:58: 37000000 INFO @ Fri, 15 Feb 2019 08:49:58: 37000000 INFO @ Fri, 15 Feb 2019 08:50:01: 38000000 INFO @ Fri, 15 Feb 2019 08:50:04: 38000000 INFO @ Fri, 15 Feb 2019 08:50:04: 38000000 INFO @ Fri, 15 Feb 2019 08:50:07: 39000000 INFO @ Fri, 15 Feb 2019 08:50:10: 39000000 INFO @ Fri, 15 Feb 2019 08:50:10: 39000000 INFO @ Fri, 15 Feb 2019 08:50:13: 40000000 INFO @ Fri, 15 Feb 2019 08:50:17: 40000000 INFO @ Fri, 15 Feb 2019 08:50:17: 40000000 INFO @ Fri, 15 Feb 2019 08:50:19: 41000000 INFO @ Fri, 15 Feb 2019 08:50:23: 41000000 INFO @ Fri, 15 Feb 2019 08:50:23: 41000000 INFO @ Fri, 15 Feb 2019 08:50:26: 42000000 INFO @ Fri, 15 Feb 2019 08:50:29: 42000000 INFO @ Fri, 15 Feb 2019 08:50:30: 42000000 INFO @ Fri, 15 Feb 2019 08:50:32: 43000000 INFO @ Fri, 15 Feb 2019 08:50:36: 43000000 INFO @ Fri, 15 Feb 2019 08:50:36: 43000000 INFO @ Fri, 15 Feb 2019 08:50:38: 44000000 INFO @ Fri, 15 Feb 2019 08:50:42: 44000000 INFO @ Fri, 15 Feb 2019 08:50:43: 44000000 INFO @ Fri, 15 Feb 2019 08:50:44: 45000000 INFO @ Fri, 15 Feb 2019 08:50:48: 45000000 INFO @ Fri, 15 Feb 2019 08:50:50: 45000000 INFO @ Fri, 15 Feb 2019 08:50:51: 46000000 INFO @ Fri, 15 Feb 2019 08:50:54: 46000000 INFO @ Fri, 15 Feb 2019 08:50:56: 46000000 INFO @ Fri, 15 Feb 2019 08:50:57: 47000000 INFO @ Fri, 15 Feb 2019 08:51:01: 47000000 INFO @ Fri, 15 Feb 2019 08:51:03: 47000000 INFO @ Fri, 15 Feb 2019 08:51:03: 48000000 INFO @ Fri, 15 Feb 2019 08:51:08: 48000000 INFO @ Fri, 15 Feb 2019 08:51:10: 49000000 INFO @ Fri, 15 Feb 2019 08:51:10: 48000000 INFO @ Fri, 15 Feb 2019 08:51:15: 49000000 INFO @ Fri, 15 Feb 2019 08:51:17: 50000000 INFO @ Fri, 15 Feb 2019 08:51:18: 49000000 INFO @ Fri, 15 Feb 2019 08:51:22: 50000000 INFO @ Fri, 15 Feb 2019 08:51:24: 51000000 INFO @ Fri, 15 Feb 2019 08:51:25: 50000000 INFO @ Fri, 15 Feb 2019 08:51:29: 51000000 INFO @ Fri, 15 Feb 2019 08:51:31: 52000000 INFO @ Fri, 15 Feb 2019 08:51:33: 51000000 INFO @ Fri, 15 Feb 2019 08:51:36: 52000000 INFO @ Fri, 15 Feb 2019 08:51:38: 53000000 INFO @ Fri, 15 Feb 2019 08:51:40: 52000000 INFO @ Fri, 15 Feb 2019 08:51:43: 53000000 INFO @ Fri, 15 Feb 2019 08:51:45: 54000000 INFO @ Fri, 15 Feb 2019 08:51:48: 53000000 INFO @ Fri, 15 Feb 2019 08:51:50: 54000000 INFO @ Fri, 15 Feb 2019 08:51:52: 55000000 INFO @ Fri, 15 Feb 2019 08:51:55: 54000000 INFO @ Fri, 15 Feb 2019 08:51:57: 55000000 INFO @ Fri, 15 Feb 2019 08:51:58: 56000000 INFO @ Fri, 15 Feb 2019 08:52:03: 55000000 INFO @ Fri, 15 Feb 2019 08:52:03: 56000000 INFO @ Fri, 15 Feb 2019 08:52:05: 57000000 INFO @ Fri, 15 Feb 2019 08:52:10: 56000000 INFO @ Fri, 15 Feb 2019 08:52:10: 57000000 INFO @ Fri, 15 Feb 2019 08:52:12: 58000000 INFO @ Fri, 15 Feb 2019 08:52:16: 57000000 INFO @ Fri, 15 Feb 2019 08:52:17: 58000000 INFO @ Fri, 15 Feb 2019 08:52:18: 59000000 INFO @ Fri, 15 Feb 2019 08:52:23: 59000000 INFO @ Fri, 15 Feb 2019 08:52:23: 58000000 INFO @ Fri, 15 Feb 2019 08:52:24: 60000000 INFO @ Fri, 15 Feb 2019 08:52:29: 60000000 INFO @ Fri, 15 Feb 2019 08:52:30: 59000000 INFO @ Fri, 15 Feb 2019 08:52:30: 61000000 INFO @ Fri, 15 Feb 2019 08:52:35: 61000000 INFO @ Fri, 15 Feb 2019 08:52:36: 60000000 INFO @ Fri, 15 Feb 2019 08:52:37: 62000000 INFO @ Fri, 15 Feb 2019 08:52:42: 62000000 INFO @ Fri, 15 Feb 2019 08:52:44: 63000000 INFO @ Fri, 15 Feb 2019 08:52:44: 61000000 INFO @ Fri, 15 Feb 2019 08:52:49: 63000000 INFO @ Fri, 15 Feb 2019 08:52:50: 64000000 INFO @ Fri, 15 Feb 2019 08:52:51: 62000000 INFO @ Fri, 15 Feb 2019 08:52:56: 64000000 INFO @ Fri, 15 Feb 2019 08:52:57: 65000000 INFO @ Fri, 15 Feb 2019 08:52:59: 63000000 INFO @ Fri, 15 Feb 2019 08:53:03: 65000000 INFO @ Fri, 15 Feb 2019 08:53:04: 66000000 INFO @ Fri, 15 Feb 2019 08:53:07: 64000000 INFO @ Fri, 15 Feb 2019 08:53:10: 66000000 INFO @ Fri, 15 Feb 2019 08:53:11: 67000000 INFO @ Fri, 15 Feb 2019 08:53:14: 65000000 INFO @ Fri, 15 Feb 2019 08:53:17: 67000000 INFO @ Fri, 15 Feb 2019 08:53:18: 68000000 INFO @ Fri, 15 Feb 2019 08:53:22: 66000000 INFO @ Fri, 15 Feb 2019 08:53:24: 68000000 INFO @ Fri, 15 Feb 2019 08:53:25: 69000000 INFO @ Fri, 15 Feb 2019 08:53:29: 67000000 INFO @ Fri, 15 Feb 2019 08:53:31: 69000000 INFO @ Fri, 15 Feb 2019 08:53:32: 70000000 INFO @ Fri, 15 Feb 2019 08:53:37: 68000000 INFO @ Fri, 15 Feb 2019 08:53:38: 70000000 INFO @ Fri, 15 Feb 2019 08:53:39: 71000000 INFO @ Fri, 15 Feb 2019 08:53:45: 69000000 INFO @ Fri, 15 Feb 2019 08:53:45: 71000000 INFO @ Fri, 15 Feb 2019 08:53:46: 72000000 INFO @ Fri, 15 Feb 2019 08:53:52: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 08:53:52: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 08:53:52: #1 total tags in treatment: 72767811 INFO @ Fri, 15 Feb 2019 08:53:52: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 08:53:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 08:53:52: 70000000 INFO @ Fri, 15 Feb 2019 08:53:52: 72000000 INFO @ Fri, 15 Feb 2019 08:53:54: #1 tags after filtering in treatment: 72767770 INFO @ Fri, 15 Feb 2019 08:53:54: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 08:53:54: #1 finished! INFO @ Fri, 15 Feb 2019 08:53:54: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 08:53:54: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 08:53:58: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 08:53:58: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 08:53:58: #1 total tags in treatment: 72767811 INFO @ Fri, 15 Feb 2019 08:53:58: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 08:53:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 08:53:59: 71000000 INFO @ Fri, 15 Feb 2019 08:54:00: #2 number of paired peaks: 7904 INFO @ Fri, 15 Feb 2019 08:54:00: start model_add_line... INFO @ Fri, 15 Feb 2019 08:54:00: #1 tags after filtering in treatment: 72767770 INFO @ Fri, 15 Feb 2019 08:54:00: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 08:54:00: #1 finished! INFO @ Fri, 15 Feb 2019 08:54:00: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 08:54:00: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 08:54:01: start X-correlation... INFO @ Fri, 15 Feb 2019 08:54:01: end of X-cor INFO @ Fri, 15 Feb 2019 08:54:01: #2 finished! INFO @ Fri, 15 Feb 2019 08:54:01: #2 predicted fragment length is 54 bps INFO @ Fri, 15 Feb 2019 08:54:01: #2 alternative fragment length(s) may be 54 bps INFO @ Fri, 15 Feb 2019 08:54:01: #2.2 Generate R script for model : SRX4497201.10_model.r WARNING @ Fri, 15 Feb 2019 08:54:01: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 08:54:01: #2 You may need to consider one of the other alternative d(s): 54 WARNING @ Fri, 15 Feb 2019 08:54:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 08:54:01: #3 Call peaks... INFO @ Fri, 15 Feb 2019 08:54:01: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 08:54:05: 72000000 INFO @ Fri, 15 Feb 2019 08:54:06: #2 number of paired peaks: 7904 INFO @ Fri, 15 Feb 2019 08:54:06: start model_add_line... INFO @ Fri, 15 Feb 2019 08:54:06: start X-correlation... INFO @ Fri, 15 Feb 2019 08:54:06: end of X-cor INFO @ Fri, 15 Feb 2019 08:54:06: #2 finished! INFO @ Fri, 15 Feb 2019 08:54:06: #2 predicted fragment length is 54 bps INFO @ Fri, 15 Feb 2019 08:54:06: #2 alternative fragment length(s) may be 54 bps INFO @ Fri, 15 Feb 2019 08:54:06: #2.2 Generate R script for model : SRX4497201.05_model.r WARNING @ Fri, 15 Feb 2019 08:54:06: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 08:54:06: #2 You may need to consider one of the other alternative d(s): 54 WARNING @ Fri, 15 Feb 2019 08:54:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 08:54:06: #3 Call peaks... INFO @ Fri, 15 Feb 2019 08:54:06: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 08:54:10: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 08:54:10: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 08:54:10: #1 total tags in treatment: 72767811 INFO @ Fri, 15 Feb 2019 08:54:10: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 08:54:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 08:54:12: #1 tags after filtering in treatment: 72767770 INFO @ Fri, 15 Feb 2019 08:54:12: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 08:54:12: #1 finished! INFO @ Fri, 15 Feb 2019 08:54:12: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 08:54:12: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 08:54:18: #2 number of paired peaks: 7904 INFO @ Fri, 15 Feb 2019 08:54:18: start model_add_line... INFO @ Fri, 15 Feb 2019 08:54:19: start X-correlation... INFO @ Fri, 15 Feb 2019 08:54:19: end of X-cor INFO @ Fri, 15 Feb 2019 08:54:19: #2 finished! INFO @ Fri, 15 Feb 2019 08:54:19: #2 predicted fragment length is 54 bps INFO @ Fri, 15 Feb 2019 08:54:19: #2 alternative fragment length(s) may be 54 bps INFO @ Fri, 15 Feb 2019 08:54:19: #2.2 Generate R script for model : SRX4497201.20_model.r WARNING @ Fri, 15 Feb 2019 08:54:19: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 08:54:19: #2 You may need to consider one of the other alternative d(s): 54 WARNING @ Fri, 15 Feb 2019 08:54:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 08:54:19: #3 Call peaks... INFO @ Fri, 15 Feb 2019 08:54:19: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 08:56:44: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 08:57:01: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 08:57:02: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 08:58:27: #4 Write output xls file... SRX4497201.10_peaks.xls INFO @ Fri, 15 Feb 2019 08:58:27: #4 Write peak in narrowPeak format file... SRX4497201.10_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 08:58:27: #4 Write summits bed file... SRX4497201.10_summits.bed INFO @ Fri, 15 Feb 2019 08:58:27: Done! pass1 - making usageList (61 chroms): 5 millis pass2 - checking and writing primary data (2074 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 08:58:33: #4 Write output xls file... SRX4497201.05_peaks.xls INFO @ Fri, 15 Feb 2019 08:58:33: #4 Write peak in narrowPeak format file... SRX4497201.05_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 08:58:33: #4 Write summits bed file... SRX4497201.05_summits.bed INFO @ Fri, 15 Feb 2019 08:58:33: Done! pass1 - making usageList (88 chroms): 4 millis pass2 - checking and writing primary data (4472 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 08:58:45: #4 Write output xls file... SRX4497201.20_peaks.xls INFO @ Fri, 15 Feb 2019 08:58:45: #4 Write peak in narrowPeak format file... SRX4497201.20_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 08:58:45: #4 Write summits bed file... SRX4497201.20_summits.bed INFO @ Fri, 15 Feb 2019 08:58:45: Done! pass1 - making usageList (46 chroms): 2 millis pass2 - checking and writing primary data (881 records, 4 fields): 6 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。