Job ID = 7096705 SRX = SRX3919492 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 72760657 spots for SRR6978720/SRR6978720.sra Written 72760657 spots for SRR6978720/SRR6978720.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:02 Multiseed full-index search: 00:42:05 72760657 reads; of these: 72760657 (100.00%) were unpaired; of these: 6104446 (8.39%) aligned 0 times 49814295 (68.46%) aligned exactly 1 time 16841916 (23.15%) aligned >1 times 91.61% overall alignment rate Time searching: 00:42:10 Overall time: 00:42:10 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 3934849 / 66656211 = 0.0590 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Jul 2020 12:01:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Jul 2020 12:01:19: #1 read tag files... INFO @ Wed, 22 Jul 2020 12:01:19: #1 read treatment tags... INFO @ Wed, 22 Jul 2020 12:01:24: 1000000 INFO @ Wed, 22 Jul 2020 12:01:30: 2000000 INFO @ Wed, 22 Jul 2020 12:01:36: 3000000 INFO @ Wed, 22 Jul 2020 12:01:42: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Jul 2020 12:01:47: 5000000 INFO @ Wed, 22 Jul 2020 12:01:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Jul 2020 12:01:49: #1 read tag files... INFO @ Wed, 22 Jul 2020 12:01:49: #1 read treatment tags... INFO @ Wed, 22 Jul 2020 12:01:53: 6000000 INFO @ Wed, 22 Jul 2020 12:01:55: 1000000 INFO @ Wed, 22 Jul 2020 12:01:59: 7000000 INFO @ Wed, 22 Jul 2020 12:02:01: 2000000 INFO @ Wed, 22 Jul 2020 12:02:06: 8000000 INFO @ Wed, 22 Jul 2020 12:02:07: 3000000 INFO @ Wed, 22 Jul 2020 12:02:12: 9000000 INFO @ Wed, 22 Jul 2020 12:02:14: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Jul 2020 12:02:18: 10000000 INFO @ Wed, 22 Jul 2020 12:02:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Jul 2020 12:02:19: #1 read tag files... INFO @ Wed, 22 Jul 2020 12:02:19: #1 read treatment tags... INFO @ Wed, 22 Jul 2020 12:02:20: 5000000 INFO @ Wed, 22 Jul 2020 12:02:25: 11000000 INFO @ Wed, 22 Jul 2020 12:02:26: 1000000 INFO @ Wed, 22 Jul 2020 12:02:27: 6000000 INFO @ Wed, 22 Jul 2020 12:02:32: 12000000 INFO @ Wed, 22 Jul 2020 12:02:33: 2000000 INFO @ Wed, 22 Jul 2020 12:02:34: 7000000 INFO @ Wed, 22 Jul 2020 12:02:39: 13000000 INFO @ Wed, 22 Jul 2020 12:02:40: 3000000 INFO @ Wed, 22 Jul 2020 12:02:41: 8000000 INFO @ Wed, 22 Jul 2020 12:02:45: 14000000 INFO @ Wed, 22 Jul 2020 12:02:47: 4000000 INFO @ Wed, 22 Jul 2020 12:02:48: 9000000 INFO @ Wed, 22 Jul 2020 12:02:52: 15000000 INFO @ Wed, 22 Jul 2020 12:02:55: 5000000 INFO @ Wed, 22 Jul 2020 12:02:55: 10000000 INFO @ Wed, 22 Jul 2020 12:02:59: 16000000 INFO @ Wed, 22 Jul 2020 12:03:02: 6000000 INFO @ Wed, 22 Jul 2020 12:03:03: 11000000 INFO @ Wed, 22 Jul 2020 12:03:06: 17000000 INFO @ Wed, 22 Jul 2020 12:03:09: 7000000 INFO @ Wed, 22 Jul 2020 12:03:11: 12000000 INFO @ Wed, 22 Jul 2020 12:03:13: 18000000 INFO @ Wed, 22 Jul 2020 12:03:17: 8000000 INFO @ Wed, 22 Jul 2020 12:03:18: 13000000 INFO @ Wed, 22 Jul 2020 12:03:20: 19000000 INFO @ Wed, 22 Jul 2020 12:03:24: 9000000 INFO @ Wed, 22 Jul 2020 12:03:26: 14000000 INFO @ Wed, 22 Jul 2020 12:03:27: 20000000 INFO @ Wed, 22 Jul 2020 12:03:32: 10000000 INFO @ Wed, 22 Jul 2020 12:03:33: 15000000 INFO @ Wed, 22 Jul 2020 12:03:34: 21000000 INFO @ Wed, 22 Jul 2020 12:03:39: 11000000 INFO @ Wed, 22 Jul 2020 12:03:40: 16000000 INFO @ Wed, 22 Jul 2020 12:03:41: 22000000 INFO @ Wed, 22 Jul 2020 12:03:47: 12000000 INFO @ Wed, 22 Jul 2020 12:03:48: 17000000 INFO @ Wed, 22 Jul 2020 12:03:48: 23000000 INFO @ Wed, 22 Jul 2020 12:03:54: 13000000 INFO @ Wed, 22 Jul 2020 12:03:55: 18000000 INFO @ Wed, 22 Jul 2020 12:03:55: 24000000 INFO @ Wed, 22 Jul 2020 12:04:02: 14000000 INFO @ Wed, 22 Jul 2020 12:04:03: 25000000 INFO @ Wed, 22 Jul 2020 12:04:03: 19000000 INFO @ Wed, 22 Jul 2020 12:04:09: 15000000 INFO @ Wed, 22 Jul 2020 12:04:10: 26000000 INFO @ Wed, 22 Jul 2020 12:04:11: 20000000 INFO @ Wed, 22 Jul 2020 12:04:17: 16000000 INFO @ Wed, 22 Jul 2020 12:04:17: 27000000 INFO @ Wed, 22 Jul 2020 12:04:19: 21000000 INFO @ Wed, 22 Jul 2020 12:04:24: 17000000 INFO @ Wed, 22 Jul 2020 12:04:24: 28000000 INFO @ Wed, 22 Jul 2020 12:04:26: 22000000 INFO @ Wed, 22 Jul 2020 12:04:31: 29000000 INFO @ Wed, 22 Jul 2020 12:04:31: 18000000 INFO @ Wed, 22 Jul 2020 12:04:34: 23000000 INFO @ Wed, 22 Jul 2020 12:04:38: 30000000 INFO @ Wed, 22 Jul 2020 12:04:39: 19000000 INFO @ Wed, 22 Jul 2020 12:04:42: 24000000 INFO @ Wed, 22 Jul 2020 12:04:45: 31000000 INFO @ Wed, 22 Jul 2020 12:04:46: 20000000 INFO @ Wed, 22 Jul 2020 12:04:49: 25000000 INFO @ Wed, 22 Jul 2020 12:04:52: 32000000 INFO @ Wed, 22 Jul 2020 12:04:54: 21000000 INFO @ Wed, 22 Jul 2020 12:04:57: 26000000 INFO @ Wed, 22 Jul 2020 12:04:59: 33000000 INFO @ Wed, 22 Jul 2020 12:05:01: 22000000 INFO @ Wed, 22 Jul 2020 12:05:05: 27000000 INFO @ Wed, 22 Jul 2020 12:05:06: 34000000 INFO @ Wed, 22 Jul 2020 12:05:09: 23000000 INFO @ Wed, 22 Jul 2020 12:05:13: 28000000 INFO @ Wed, 22 Jul 2020 12:05:13: 35000000 INFO @ Wed, 22 Jul 2020 12:05:16: 24000000 INFO @ Wed, 22 Jul 2020 12:05:20: 36000000 INFO @ Wed, 22 Jul 2020 12:05:20: 29000000 INFO @ Wed, 22 Jul 2020 12:05:23: 25000000 INFO @ Wed, 22 Jul 2020 12:05:27: 37000000 INFO @ Wed, 22 Jul 2020 12:05:28: 30000000 INFO @ Wed, 22 Jul 2020 12:05:31: 26000000 INFO @ Wed, 22 Jul 2020 12:05:34: 38000000 INFO @ Wed, 22 Jul 2020 12:05:36: 31000000 INFO @ Wed, 22 Jul 2020 12:05:38: 27000000 INFO @ Wed, 22 Jul 2020 12:05:41: 39000000 INFO @ Wed, 22 Jul 2020 12:05:44: 32000000 INFO @ Wed, 22 Jul 2020 12:05:46: 28000000 INFO @ Wed, 22 Jul 2020 12:05:48: 40000000 INFO @ Wed, 22 Jul 2020 12:05:51: 33000000 INFO @ Wed, 22 Jul 2020 12:05:53: 29000000 INFO @ Wed, 22 Jul 2020 12:05:55: 41000000 INFO @ Wed, 22 Jul 2020 12:05:59: 34000000 INFO @ Wed, 22 Jul 2020 12:06:01: 30000000 INFO @ Wed, 22 Jul 2020 12:06:02: 42000000 INFO @ Wed, 22 Jul 2020 12:06:06: 35000000 INFO @ Wed, 22 Jul 2020 12:06:08: 31000000 INFO @ Wed, 22 Jul 2020 12:06:09: 43000000 INFO @ Wed, 22 Jul 2020 12:06:14: 36000000 INFO @ Wed, 22 Jul 2020 12:06:16: 32000000 INFO @ Wed, 22 Jul 2020 12:06:16: 44000000 INFO @ Wed, 22 Jul 2020 12:06:22: 37000000 INFO @ Wed, 22 Jul 2020 12:06:23: 45000000 INFO @ Wed, 22 Jul 2020 12:06:23: 33000000 INFO @ Wed, 22 Jul 2020 12:06:29: 38000000 INFO @ Wed, 22 Jul 2020 12:06:30: 46000000 INFO @ Wed, 22 Jul 2020 12:06:31: 34000000 INFO @ Wed, 22 Jul 2020 12:06:37: 39000000 INFO @ Wed, 22 Jul 2020 12:06:37: 47000000 INFO @ Wed, 22 Jul 2020 12:06:38: 35000000 INFO @ Wed, 22 Jul 2020 12:06:44: 40000000 INFO @ Wed, 22 Jul 2020 12:06:44: 48000000 INFO @ Wed, 22 Jul 2020 12:06:47: 36000000 INFO @ Wed, 22 Jul 2020 12:06:51: 49000000 INFO @ Wed, 22 Jul 2020 12:06:52: 41000000 INFO @ Wed, 22 Jul 2020 12:06:55: 37000000 INFO @ Wed, 22 Jul 2020 12:06:58: 50000000 INFO @ Wed, 22 Jul 2020 12:06:59: 42000000 INFO @ Wed, 22 Jul 2020 12:07:02: 38000000 INFO @ Wed, 22 Jul 2020 12:07:05: 51000000 INFO @ Wed, 22 Jul 2020 12:07:07: 43000000 INFO @ Wed, 22 Jul 2020 12:07:10: 39000000 INFO @ Wed, 22 Jul 2020 12:07:12: 52000000 INFO @ Wed, 22 Jul 2020 12:07:14: 44000000 INFO @ Wed, 22 Jul 2020 12:07:18: 40000000 INFO @ Wed, 22 Jul 2020 12:07:19: 53000000 INFO @ Wed, 22 Jul 2020 12:07:22: 45000000 INFO @ Wed, 22 Jul 2020 12:07:25: 41000000 INFO @ Wed, 22 Jul 2020 12:07:26: 54000000 INFO @ Wed, 22 Jul 2020 12:07:29: 46000000 INFO @ Wed, 22 Jul 2020 12:07:33: 55000000 INFO @ Wed, 22 Jul 2020 12:07:33: 42000000 INFO @ Wed, 22 Jul 2020 12:07:37: 47000000 INFO @ Wed, 22 Jul 2020 12:07:40: 56000000 INFO @ Wed, 22 Jul 2020 12:07:41: 43000000 INFO @ Wed, 22 Jul 2020 12:07:44: 48000000 INFO @ Wed, 22 Jul 2020 12:07:47: 57000000 INFO @ Wed, 22 Jul 2020 12:07:48: 44000000 INFO @ Wed, 22 Jul 2020 12:07:52: 49000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 22 Jul 2020 12:07:54: 58000000 INFO @ Wed, 22 Jul 2020 12:07:56: 45000000 INFO @ Wed, 22 Jul 2020 12:07:59: 50000000 INFO @ Wed, 22 Jul 2020 12:08:01: 59000000 INFO @ Wed, 22 Jul 2020 12:08:03: 46000000 INFO @ Wed, 22 Jul 2020 12:08:07: 51000000 INFO @ Wed, 22 Jul 2020 12:08:09: 60000000 INFO @ Wed, 22 Jul 2020 12:08:11: 47000000 INFO @ Wed, 22 Jul 2020 12:08:14: 52000000 INFO @ Wed, 22 Jul 2020 12:08:16: 61000000 INFO @ Wed, 22 Jul 2020 12:08:18: 48000000 INFO @ Wed, 22 Jul 2020 12:08:22: 53000000 INFO @ Wed, 22 Jul 2020 12:08:23: 62000000 INFO @ Wed, 22 Jul 2020 12:08:26: 49000000 INFO @ Wed, 22 Jul 2020 12:08:29: #1 tag size is determined as 50 bps INFO @ Wed, 22 Jul 2020 12:08:29: #1 tag size = 50 INFO @ Wed, 22 Jul 2020 12:08:29: #1 total tags in treatment: 62721362 INFO @ Wed, 22 Jul 2020 12:08:29: #1 user defined the maximum tags... INFO @ Wed, 22 Jul 2020 12:08:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Jul 2020 12:08:29: 54000000 INFO @ Wed, 22 Jul 2020 12:08:30: #1 tags after filtering in treatment: 62721315 INFO @ Wed, 22 Jul 2020 12:08:30: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Jul 2020 12:08:30: #1 finished! INFO @ Wed, 22 Jul 2020 12:08:30: #2 Build Peak Model... INFO @ Wed, 22 Jul 2020 12:08:30: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Jul 2020 12:08:33: 50000000 INFO @ Wed, 22 Jul 2020 12:08:35: #2 number of paired peaks: 3548 INFO @ Wed, 22 Jul 2020 12:08:35: start model_add_line... INFO @ Wed, 22 Jul 2020 12:08:35: start X-correlation... INFO @ Wed, 22 Jul 2020 12:08:35: end of X-cor INFO @ Wed, 22 Jul 2020 12:08:35: #2 finished! INFO @ Wed, 22 Jul 2020 12:08:35: #2 predicted fragment length is 49 bps INFO @ Wed, 22 Jul 2020 12:08:35: #2 alternative fragment length(s) may be 49 bps INFO @ Wed, 22 Jul 2020 12:08:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.05_model.r WARNING @ Wed, 22 Jul 2020 12:08:35: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 22 Jul 2020 12:08:35: #2 You may need to consider one of the other alternative d(s): 49 WARNING @ Wed, 22 Jul 2020 12:08:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 22 Jul 2020 12:08:35: #3 Call peaks... INFO @ Wed, 22 Jul 2020 12:08:35: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 22 Jul 2020 12:08:37: 55000000 INFO @ Wed, 22 Jul 2020 12:08:41: 51000000 INFO @ Wed, 22 Jul 2020 12:08:45: 56000000 INFO @ Wed, 22 Jul 2020 12:08:48: 52000000 INFO @ Wed, 22 Jul 2020 12:08:52: 57000000 INFO @ Wed, 22 Jul 2020 12:08:56: 53000000 INFO @ Wed, 22 Jul 2020 12:09:00: 58000000 INFO @ Wed, 22 Jul 2020 12:09:03: 54000000 INFO @ Wed, 22 Jul 2020 12:09:07: 59000000 INFO @ Wed, 22 Jul 2020 12:09:11: 55000000 INFO @ Wed, 22 Jul 2020 12:09:15: 60000000 INFO @ Wed, 22 Jul 2020 12:09:19: 56000000 INFO @ Wed, 22 Jul 2020 12:09:23: 61000000 INFO @ Wed, 22 Jul 2020 12:09:26: 57000000 INFO @ Wed, 22 Jul 2020 12:09:31: 62000000 INFO @ Wed, 22 Jul 2020 12:09:34: 58000000 INFO @ Wed, 22 Jul 2020 12:09:36: #1 tag size is determined as 50 bps INFO @ Wed, 22 Jul 2020 12:09:36: #1 tag size = 50 INFO @ Wed, 22 Jul 2020 12:09:36: #1 total tags in treatment: 62721362 INFO @ Wed, 22 Jul 2020 12:09:36: #1 user defined the maximum tags... INFO @ Wed, 22 Jul 2020 12:09:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Jul 2020 12:09:38: #1 tags after filtering in treatment: 62721315 INFO @ Wed, 22 Jul 2020 12:09:38: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Jul 2020 12:09:38: #1 finished! INFO @ Wed, 22 Jul 2020 12:09:38: #2 Build Peak Model... INFO @ Wed, 22 Jul 2020 12:09:38: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Jul 2020 12:09:41: 59000000 INFO @ Wed, 22 Jul 2020 12:09:42: #2 number of paired peaks: 3548 INFO @ Wed, 22 Jul 2020 12:09:42: start model_add_line... INFO @ Wed, 22 Jul 2020 12:09:43: start X-correlation... INFO @ Wed, 22 Jul 2020 12:09:43: end of X-cor INFO @ Wed, 22 Jul 2020 12:09:43: #2 finished! INFO @ Wed, 22 Jul 2020 12:09:43: #2 predicted fragment length is 49 bps INFO @ Wed, 22 Jul 2020 12:09:43: #2 alternative fragment length(s) may be 49 bps INFO @ Wed, 22 Jul 2020 12:09:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.10_model.r WARNING @ Wed, 22 Jul 2020 12:09:43: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 22 Jul 2020 12:09:43: #2 You may need to consider one of the other alternative d(s): 49 WARNING @ Wed, 22 Jul 2020 12:09:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 22 Jul 2020 12:09:43: #3 Call peaks... INFO @ Wed, 22 Jul 2020 12:09:43: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 22 Jul 2020 12:09:48: 60000000 INFO @ Wed, 22 Jul 2020 12:09:54: 61000000 INFO @ Wed, 22 Jul 2020 12:10:01: 62000000 INFO @ Wed, 22 Jul 2020 12:10:06: #1 tag size is determined as 50 bps INFO @ Wed, 22 Jul 2020 12:10:06: #1 tag size = 50 INFO @ Wed, 22 Jul 2020 12:10:06: #1 total tags in treatment: 62721362 INFO @ Wed, 22 Jul 2020 12:10:06: #1 user defined the maximum tags... INFO @ Wed, 22 Jul 2020 12:10:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Jul 2020 12:10:07: #1 tags after filtering in treatment: 62721315 INFO @ Wed, 22 Jul 2020 12:10:07: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Jul 2020 12:10:07: #1 finished! INFO @ Wed, 22 Jul 2020 12:10:07: #2 Build Peak Model... INFO @ Wed, 22 Jul 2020 12:10:07: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Jul 2020 12:10:12: #2 number of paired peaks: 3548 INFO @ Wed, 22 Jul 2020 12:10:12: start model_add_line... INFO @ Wed, 22 Jul 2020 12:10:12: start X-correlation... INFO @ Wed, 22 Jul 2020 12:10:12: end of X-cor INFO @ Wed, 22 Jul 2020 12:10:12: #2 finished! INFO @ Wed, 22 Jul 2020 12:10:12: #2 predicted fragment length is 49 bps INFO @ Wed, 22 Jul 2020 12:10:12: #2 alternative fragment length(s) may be 49 bps INFO @ Wed, 22 Jul 2020 12:10:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.20_model.r WARNING @ Wed, 22 Jul 2020 12:10:12: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 22 Jul 2020 12:10:12: #2 You may need to consider one of the other alternative d(s): 49 WARNING @ Wed, 22 Jul 2020 12:10:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 22 Jul 2020 12:10:12: #3 Call peaks... INFO @ Wed, 22 Jul 2020 12:10:12: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Wed, 22 Jul 2020 12:10:48: #3 Call peaks for each chromosome... INFO @ Wed, 22 Jul 2020 12:11:54: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.05_peaks.xls INFO @ Wed, 22 Jul 2020 12:11:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.05_peaks.narrowPeak INFO @ Wed, 22 Jul 2020 12:11:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.05_summits.bed INFO @ Wed, 22 Jul 2020 12:11:54: Done! pass1 - making usageList (56 chroms): 2 millis pass2 - checking and writing primary data (2467 records, 4 fields): 20 millis CompletedMACS2peakCalling INFO @ Wed, 22 Jul 2020 12:11:58: #3 Call peaks for each chromosome... INFO @ Wed, 22 Jul 2020 12:12:25: #3 Call peaks for each chromosome... INFO @ Wed, 22 Jul 2020 12:13:07: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.10_peaks.xls INFO @ Wed, 22 Jul 2020 12:13:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.10_peaks.narrowPeak INFO @ Wed, 22 Jul 2020 12:13:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.10_summits.bed INFO @ Wed, 22 Jul 2020 12:13:07: Done! pass1 - making usageList (44 chroms): 1 millis pass2 - checking and writing primary data (1368 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Wed, 22 Jul 2020 12:13:32: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.20_peaks.xls INFO @ Wed, 22 Jul 2020 12:13:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.20_peaks.narrowPeak INFO @ Wed, 22 Jul 2020 12:13:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX3919492/SRX3919492.20_summits.bed INFO @ Wed, 22 Jul 2020 12:13:32: Done! pass1 - making usageList (37 chroms): 1 millis pass2 - checking and writing primary data (673 records, 4 fields): 3 millis CompletedMACS2peakCalling