Job ID = 11632669 sra ファイルのダウンロード中... Completed: 1752125K bytes transferred in 42 seconds (335523K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 106087308 spots for /home/okishinya/chipatlas/results/rn6/SRX3360101/SRR6253207.sra Written 106087308 spots for /home/okishinya/chipatlas/results/rn6/SRX3360101/SRR6253207.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:29:46 106087308 reads; of these: 106087308 (100.00%) were unpaired; of these: 4507093 (4.25%) aligned 0 times 71089850 (67.01%) aligned exactly 1 time 30490365 (28.74%) aligned >1 times 95.75% overall alignment rate Time searching: 01:29:48 Overall time: 01:29:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 44 files... [bam_rmdupse_core] 4757817 / 101580215 = 0.0468 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 15 Feb 2019 07:22:42: # Command line: callpeak -t SRX3360101.bam -f BAM -g 2.15e9 -n SRX3360101.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3360101.20 # format = BAM # ChIP-seq file = ['SRX3360101.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:22:42: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:22:42: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:22:42: # Command line: callpeak -t SRX3360101.bam -f BAM -g 2.15e9 -n SRX3360101.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3360101.05 # format = BAM # ChIP-seq file = ['SRX3360101.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:22:42: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:22:42: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:22:42: # Command line: callpeak -t SRX3360101.bam -f BAM -g 2.15e9 -n SRX3360101.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3360101.10 # format = BAM # ChIP-seq file = ['SRX3360101.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:22:42: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:22:42: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:22:47: 1000000 INFO @ Fri, 15 Feb 2019 07:22:48: 1000000 INFO @ Fri, 15 Feb 2019 07:22:48: 1000000 INFO @ Fri, 15 Feb 2019 07:22:53: 2000000 INFO @ Fri, 15 Feb 2019 07:22:54: 2000000 INFO @ Fri, 15 Feb 2019 07:22:54: 2000000 INFO @ Fri, 15 Feb 2019 07:22:59: 3000000 INFO @ Fri, 15 Feb 2019 07:23:00: 3000000 INFO @ Fri, 15 Feb 2019 07:23:00: 3000000 INFO @ Fri, 15 Feb 2019 07:23:05: 4000000 INFO @ Fri, 15 Feb 2019 07:23:06: 4000000 INFO @ Fri, 15 Feb 2019 07:23:06: 4000000 INFO @ Fri, 15 Feb 2019 07:23:11: 5000000 INFO @ Fri, 15 Feb 2019 07:23:12: 5000000 INFO @ Fri, 15 Feb 2019 07:23:12: 5000000 INFO @ Fri, 15 Feb 2019 07:23:17: 6000000 INFO @ Fri, 15 Feb 2019 07:23:18: 6000000 INFO @ Fri, 15 Feb 2019 07:23:18: 6000000 INFO @ Fri, 15 Feb 2019 07:23:23: 7000000 INFO @ Fri, 15 Feb 2019 07:23:24: 7000000 INFO @ Fri, 15 Feb 2019 07:23:25: 7000000 INFO @ Fri, 15 Feb 2019 07:23:29: 8000000 INFO @ Fri, 15 Feb 2019 07:23:31: 8000000 INFO @ Fri, 15 Feb 2019 07:23:31: 8000000 INFO @ Fri, 15 Feb 2019 07:23:35: 9000000 INFO @ Fri, 15 Feb 2019 07:23:37: 9000000 INFO @ Fri, 15 Feb 2019 07:23:37: 9000000 INFO @ Fri, 15 Feb 2019 07:23:41: 10000000 INFO @ Fri, 15 Feb 2019 07:23:43: 10000000 INFO @ Fri, 15 Feb 2019 07:23:43: 10000000 INFO @ Fri, 15 Feb 2019 07:23:47: 11000000 INFO @ Fri, 15 Feb 2019 07:23:49: 11000000 INFO @ Fri, 15 Feb 2019 07:23:49: 11000000 INFO @ Fri, 15 Feb 2019 07:23:53: 12000000 INFO @ Fri, 15 Feb 2019 07:23:55: 12000000 INFO @ Fri, 15 Feb 2019 07:23:56: 12000000 INFO @ Fri, 15 Feb 2019 07:23:59: 13000000 INFO @ Fri, 15 Feb 2019 07:24:01: 13000000 INFO @ Fri, 15 Feb 2019 07:24:02: 13000000 INFO @ Fri, 15 Feb 2019 07:24:05: 14000000 INFO @ Fri, 15 Feb 2019 07:24:07: 14000000 INFO @ Fri, 15 Feb 2019 07:24:08: 14000000 INFO @ Fri, 15 Feb 2019 07:24:11: 15000000 INFO @ Fri, 15 Feb 2019 07:24:13: 15000000 INFO @ Fri, 15 Feb 2019 07:24:14: 15000000 INFO @ Fri, 15 Feb 2019 07:24:17: 16000000 INFO @ Fri, 15 Feb 2019 07:24:19: 16000000 INFO @ Fri, 15 Feb 2019 07:24:20: 16000000 INFO @ Fri, 15 Feb 2019 07:24:23: 17000000 INFO @ Fri, 15 Feb 2019 07:24:25: 17000000 INFO @ Fri, 15 Feb 2019 07:24:26: 17000000 INFO @ Fri, 15 Feb 2019 07:24:29: 18000000 INFO @ Fri, 15 Feb 2019 07:24:31: 18000000 INFO @ Fri, 15 Feb 2019 07:24:33: 18000000 INFO @ Fri, 15 Feb 2019 07:24:35: 19000000 INFO @ Fri, 15 Feb 2019 07:24:37: 19000000 INFO @ Fri, 15 Feb 2019 07:24:39: 19000000 INFO @ Fri, 15 Feb 2019 07:24:41: 20000000 INFO @ Fri, 15 Feb 2019 07:24:42: 20000000 INFO @ Fri, 15 Feb 2019 07:24:45: 20000000 INFO @ Fri, 15 Feb 2019 07:24:47: 21000000 INFO @ Fri, 15 Feb 2019 07:24:48: 21000000 INFO @ Fri, 15 Feb 2019 07:24:51: 21000000 INFO @ Fri, 15 Feb 2019 07:24:53: 22000000 INFO @ Fri, 15 Feb 2019 07:24:54: 22000000 INFO @ Fri, 15 Feb 2019 07:24:57: 22000000 INFO @ Fri, 15 Feb 2019 07:24:58: 23000000 INFO @ Fri, 15 Feb 2019 07:25:00: 23000000 INFO @ Fri, 15 Feb 2019 07:25:03: 23000000 INFO @ Fri, 15 Feb 2019 07:25:04: 24000000 INFO @ Fri, 15 Feb 2019 07:25:06: 24000000 INFO @ Fri, 15 Feb 2019 07:25:09: 24000000 INFO @ Fri, 15 Feb 2019 07:25:10: 25000000 INFO @ Fri, 15 Feb 2019 07:25:12: 25000000 INFO @ Fri, 15 Feb 2019 07:25:15: 25000000 INFO @ Fri, 15 Feb 2019 07:25:16: 26000000 INFO @ Fri, 15 Feb 2019 07:25:18: 26000000 INFO @ Fri, 15 Feb 2019 07:25:21: 26000000 INFO @ Fri, 15 Feb 2019 07:25:22: 27000000 INFO @ Fri, 15 Feb 2019 07:25:24: 27000000 INFO @ Fri, 15 Feb 2019 07:25:28: 27000000 INFO @ Fri, 15 Feb 2019 07:25:28: 28000000 INFO @ Fri, 15 Feb 2019 07:25:30: 28000000 INFO @ Fri, 15 Feb 2019 07:25:34: 28000000 INFO @ Fri, 15 Feb 2019 07:25:34: 29000000 INFO @ Fri, 15 Feb 2019 07:25:36: 29000000 INFO @ Fri, 15 Feb 2019 07:25:40: 29000000 INFO @ Fri, 15 Feb 2019 07:25:40: 30000000 INFO @ Fri, 15 Feb 2019 07:25:42: 30000000 INFO @ Fri, 15 Feb 2019 07:25:46: 31000000 INFO @ Fri, 15 Feb 2019 07:25:46: 30000000 INFO @ Fri, 15 Feb 2019 07:25:48: 31000000 INFO @ Fri, 15 Feb 2019 07:25:51: 32000000 INFO @ Fri, 15 Feb 2019 07:25:52: 31000000 INFO @ Fri, 15 Feb 2019 07:25:54: 32000000 INFO @ Fri, 15 Feb 2019 07:25:57: 33000000 INFO @ Fri, 15 Feb 2019 07:25:58: 32000000 INFO @ Fri, 15 Feb 2019 07:26:00: 33000000 INFO @ Fri, 15 Feb 2019 07:26:03: 34000000 INFO @ Fri, 15 Feb 2019 07:26:04: 33000000 INFO @ Fri, 15 Feb 2019 07:26:06: 34000000 INFO @ Fri, 15 Feb 2019 07:26:09: 35000000 INFO @ Fri, 15 Feb 2019 07:26:10: 34000000 INFO @ Fri, 15 Feb 2019 07:26:12: 35000000 INFO @ Fri, 15 Feb 2019 07:26:15: 36000000 INFO @ Fri, 15 Feb 2019 07:26:16: 35000000 INFO @ Fri, 15 Feb 2019 07:26:18: 36000000 INFO @ Fri, 15 Feb 2019 07:26:21: 37000000 INFO @ Fri, 15 Feb 2019 07:26:23: 36000000 INFO @ Fri, 15 Feb 2019 07:26:24: 37000000 INFO @ Fri, 15 Feb 2019 07:26:27: 38000000 INFO @ Fri, 15 Feb 2019 07:26:29: 37000000 INFO @ Fri, 15 Feb 2019 07:26:30: 38000000 INFO @ Fri, 15 Feb 2019 07:26:33: 39000000 INFO @ Fri, 15 Feb 2019 07:26:35: 38000000 INFO @ Fri, 15 Feb 2019 07:26:36: 39000000 INFO @ Fri, 15 Feb 2019 07:26:39: 40000000 INFO @ Fri, 15 Feb 2019 07:26:41: 39000000 INFO @ Fri, 15 Feb 2019 07:26:42: 40000000 INFO @ Fri, 15 Feb 2019 07:26:45: 41000000 INFO @ Fri, 15 Feb 2019 07:26:47: 40000000 INFO @ Fri, 15 Feb 2019 07:26:48: 41000000 INFO @ Fri, 15 Feb 2019 07:26:50: 42000000 INFO @ Fri, 15 Feb 2019 07:26:53: 41000000 INFO @ Fri, 15 Feb 2019 07:26:54: 42000000 INFO @ Fri, 15 Feb 2019 07:26:56: 43000000 INFO @ Fri, 15 Feb 2019 07:26:59: 42000000 INFO @ Fri, 15 Feb 2019 07:27:00: 43000000 INFO @ Fri, 15 Feb 2019 07:27:02: 44000000 INFO @ Fri, 15 Feb 2019 07:27:05: 43000000 INFO @ Fri, 15 Feb 2019 07:27:06: 44000000 INFO @ Fri, 15 Feb 2019 07:27:08: 45000000 INFO @ Fri, 15 Feb 2019 07:27:11: 44000000 INFO @ Fri, 15 Feb 2019 07:27:12: 45000000 INFO @ Fri, 15 Feb 2019 07:27:14: 46000000 INFO @ Fri, 15 Feb 2019 07:27:17: 45000000 INFO @ Fri, 15 Feb 2019 07:27:18: 46000000 INFO @ Fri, 15 Feb 2019 07:27:20: 47000000 INFO @ Fri, 15 Feb 2019 07:27:23: 46000000 INFO @ Fri, 15 Feb 2019 07:27:24: 47000000 INFO @ Fri, 15 Feb 2019 07:27:26: 48000000 INFO @ Fri, 15 Feb 2019 07:27:30: 47000000 INFO @ Fri, 15 Feb 2019 07:27:30: 48000000 INFO @ Fri, 15 Feb 2019 07:27:32: 49000000 INFO @ Fri, 15 Feb 2019 07:27:36: 48000000 INFO @ Fri, 15 Feb 2019 07:27:36: 49000000 INFO @ Fri, 15 Feb 2019 07:27:38: 50000000 INFO @ Fri, 15 Feb 2019 07:27:42: 49000000 INFO @ Fri, 15 Feb 2019 07:27:42: 50000000 INFO @ Fri, 15 Feb 2019 07:27:44: 51000000 INFO @ Fri, 15 Feb 2019 07:27:48: 51000000 INFO @ Fri, 15 Feb 2019 07:27:48: 50000000 INFO @ Fri, 15 Feb 2019 07:27:50: 52000000 INFO @ Fri, 15 Feb 2019 07:27:53: 52000000 INFO @ Fri, 15 Feb 2019 07:27:54: 51000000 INFO @ Fri, 15 Feb 2019 07:27:56: 53000000 INFO @ Fri, 15 Feb 2019 07:28:00: 53000000 INFO @ Fri, 15 Feb 2019 07:28:00: 52000000 INFO @ Fri, 15 Feb 2019 07:28:02: 54000000 INFO @ Fri, 15 Feb 2019 07:28:06: 54000000 INFO @ Fri, 15 Feb 2019 07:28:06: 53000000 INFO @ Fri, 15 Feb 2019 07:28:08: 55000000 INFO @ Fri, 15 Feb 2019 07:28:12: 55000000 INFO @ Fri, 15 Feb 2019 07:28:13: 54000000 INFO @ Fri, 15 Feb 2019 07:28:14: 56000000 INFO @ Fri, 15 Feb 2019 07:28:18: 56000000 INFO @ Fri, 15 Feb 2019 07:28:19: 55000000 INFO @ Fri, 15 Feb 2019 07:28:20: 57000000 INFO @ Fri, 15 Feb 2019 07:28:25: 57000000 INFO @ Fri, 15 Feb 2019 07:28:26: 56000000 INFO @ Fri, 15 Feb 2019 07:28:27: 58000000 INFO @ Fri, 15 Feb 2019 07:28:33: 57000000 INFO @ Fri, 15 Feb 2019 07:28:34: 58000000 INFO @ Fri, 15 Feb 2019 07:28:34: 59000000 INFO @ Fri, 15 Feb 2019 07:28:40: 58000000 INFO @ Fri, 15 Feb 2019 07:28:40: 60000000 INFO @ Fri, 15 Feb 2019 07:28:42: 59000000 INFO @ Fri, 15 Feb 2019 07:28:47: 59000000 INFO @ Fri, 15 Feb 2019 07:28:47: 61000000 INFO @ Fri, 15 Feb 2019 07:28:50: 60000000 INFO @ Fri, 15 Feb 2019 07:28:54: 60000000 INFO @ Fri, 15 Feb 2019 07:28:54: 62000000 INFO @ Fri, 15 Feb 2019 07:28:58: 61000000 INFO @ Fri, 15 Feb 2019 07:29:01: 63000000 INFO @ Fri, 15 Feb 2019 07:29:01: 61000000 INFO @ Fri, 15 Feb 2019 07:29:06: 62000000 INFO @ Fri, 15 Feb 2019 07:29:07: 64000000 INFO @ Fri, 15 Feb 2019 07:29:08: 62000000 INFO @ Fri, 15 Feb 2019 07:29:14: 65000000 INFO @ Fri, 15 Feb 2019 07:29:14: 63000000 INFO @ Fri, 15 Feb 2019 07:29:15: 63000000 INFO @ Fri, 15 Feb 2019 07:29:21: 66000000 INFO @ Fri, 15 Feb 2019 07:29:21: 64000000 INFO @ Fri, 15 Feb 2019 07:29:22: 64000000 INFO @ Fri, 15 Feb 2019 07:29:27: 67000000 INFO @ Fri, 15 Feb 2019 07:29:28: 65000000 INFO @ Fri, 15 Feb 2019 07:29:30: 65000000 INFO @ Fri, 15 Feb 2019 07:29:34: 68000000 INFO @ Fri, 15 Feb 2019 07:29:35: 66000000 INFO @ Fri, 15 Feb 2019 07:29:38: 66000000 INFO @ Fri, 15 Feb 2019 07:29:41: 69000000 INFO @ Fri, 15 Feb 2019 07:29:42: 67000000 INFO @ Fri, 15 Feb 2019 07:29:46: 67000000 INFO @ Fri, 15 Feb 2019 07:29:48: 70000000 INFO @ Fri, 15 Feb 2019 07:29:49: 68000000 INFO @ Fri, 15 Feb 2019 07:29:54: 68000000 INFO @ Fri, 15 Feb 2019 07:29:55: 71000000 INFO @ Fri, 15 Feb 2019 07:29:56: 69000000 INFO @ Fri, 15 Feb 2019 07:30:02: 72000000 INFO @ Fri, 15 Feb 2019 07:30:02: 69000000 INFO @ Fri, 15 Feb 2019 07:30:03: 70000000 INFO @ Fri, 15 Feb 2019 07:30:08: 73000000 INFO @ Fri, 15 Feb 2019 07:30:10: 71000000 INFO @ Fri, 15 Feb 2019 07:30:10: 70000000 INFO @ Fri, 15 Feb 2019 07:30:15: 74000000 INFO @ Fri, 15 Feb 2019 07:30:17: 72000000 INFO @ Fri, 15 Feb 2019 07:30:18: 71000000 INFO @ Fri, 15 Feb 2019 07:30:22: 75000000 INFO @ Fri, 15 Feb 2019 07:30:24: 73000000 INFO @ Fri, 15 Feb 2019 07:30:27: 72000000 INFO @ Fri, 15 Feb 2019 07:30:29: 76000000 INFO @ Fri, 15 Feb 2019 07:30:31: 74000000 INFO @ Fri, 15 Feb 2019 07:30:35: 73000000 INFO @ Fri, 15 Feb 2019 07:30:37: 77000000 INFO @ Fri, 15 Feb 2019 07:30:39: 75000000 INFO @ Fri, 15 Feb 2019 07:30:43: 74000000 INFO @ Fri, 15 Feb 2019 07:30:44: 78000000 INFO @ Fri, 15 Feb 2019 07:30:46: 76000000 INFO @ Fri, 15 Feb 2019 07:30:51: 79000000 INFO @ Fri, 15 Feb 2019 07:30:52: 75000000 INFO @ Fri, 15 Feb 2019 07:30:53: 77000000 INFO @ Fri, 15 Feb 2019 07:30:58: 80000000 INFO @ Fri, 15 Feb 2019 07:31:00: 76000000 INFO @ Fri, 15 Feb 2019 07:31:00: 78000000 INFO @ Fri, 15 Feb 2019 07:31:05: 81000000 INFO @ Fri, 15 Feb 2019 07:31:07: 79000000 INFO @ Fri, 15 Feb 2019 07:31:08: 77000000 INFO @ Fri, 15 Feb 2019 07:31:12: 82000000 INFO @ Fri, 15 Feb 2019 07:31:15: 80000000 INFO @ Fri, 15 Feb 2019 07:31:17: 78000000 INFO @ Fri, 15 Feb 2019 07:31:19: 83000000 INFO @ Fri, 15 Feb 2019 07:31:22: 81000000 INFO @ Fri, 15 Feb 2019 07:31:25: 79000000 INFO @ Fri, 15 Feb 2019 07:31:26: 84000000 INFO @ Fri, 15 Feb 2019 07:31:29: 82000000 INFO @ Fri, 15 Feb 2019 07:31:33: 85000000 INFO @ Fri, 15 Feb 2019 07:31:33: 80000000 INFO @ Fri, 15 Feb 2019 07:31:36: 83000000 INFO @ Fri, 15 Feb 2019 07:31:40: 86000000 INFO @ Fri, 15 Feb 2019 07:31:40: 81000000 INFO @ Fri, 15 Feb 2019 07:31:43: 84000000 INFO @ Fri, 15 Feb 2019 07:31:46: 87000000 INFO @ Fri, 15 Feb 2019 07:31:46: 82000000 INFO @ Fri, 15 Feb 2019 07:31:49: 85000000 INFO @ Fri, 15 Feb 2019 07:31:52: 83000000 INFO @ Fri, 15 Feb 2019 07:31:52: 88000000 INFO @ Fri, 15 Feb 2019 07:31:56: 86000000 INFO @ Fri, 15 Feb 2019 07:31:58: 84000000 INFO @ Fri, 15 Feb 2019 07:31:59: 89000000 INFO @ Fri, 15 Feb 2019 07:32:02: 87000000 INFO @ Fri, 15 Feb 2019 07:32:04: 85000000 INFO @ Fri, 15 Feb 2019 07:32:05: 90000000 INFO @ Fri, 15 Feb 2019 07:32:09: 88000000 INFO @ Fri, 15 Feb 2019 07:32:11: 86000000 INFO @ Fri, 15 Feb 2019 07:32:11: 91000000 INFO @ Fri, 15 Feb 2019 07:32:15: 89000000 INFO @ Fri, 15 Feb 2019 07:32:17: 87000000 INFO @ Fri, 15 Feb 2019 07:32:18: 92000000 INFO @ Fri, 15 Feb 2019 07:32:22: 90000000 INFO @ Fri, 15 Feb 2019 07:32:23: 88000000 INFO @ Fri, 15 Feb 2019 07:32:24: 93000000 INFO @ Fri, 15 Feb 2019 07:32:28: 91000000 INFO @ Fri, 15 Feb 2019 07:32:29: 89000000 INFO @ Fri, 15 Feb 2019 07:32:31: 94000000 INFO @ Fri, 15 Feb 2019 07:32:35: 92000000 INFO @ Fri, 15 Feb 2019 07:32:35: 90000000 INFO @ Fri, 15 Feb 2019 07:32:37: 95000000 INFO @ Fri, 15 Feb 2019 07:32:41: 91000000 INFO @ Fri, 15 Feb 2019 07:32:41: 93000000 INFO @ Fri, 15 Feb 2019 07:32:43: 96000000 INFO @ Fri, 15 Feb 2019 07:32:47: 92000000 INFO @ Fri, 15 Feb 2019 07:32:48: 94000000 INFO @ Fri, 15 Feb 2019 07:32:50: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:32:50: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:32:50: #1 total tags in treatment: 96822398 INFO @ Fri, 15 Feb 2019 07:32:50: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:32:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:32:52: #1 tags after filtering in treatment: 96822377 INFO @ Fri, 15 Feb 2019 07:32:52: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:32:52: #1 finished! INFO @ Fri, 15 Feb 2019 07:32:52: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:32:52: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:32:54: 93000000 INFO @ Fri, 15 Feb 2019 07:32:54: 95000000 INFO @ Fri, 15 Feb 2019 07:32:59: #2 number of paired peaks: 6481 INFO @ Fri, 15 Feb 2019 07:32:59: start model_add_line... INFO @ Fri, 15 Feb 2019 07:33:00: 94000000 INFO @ Fri, 15 Feb 2019 07:33:00: 96000000 INFO @ Fri, 15 Feb 2019 07:33:00: start X-correlation... INFO @ Fri, 15 Feb 2019 07:33:00: end of X-cor INFO @ Fri, 15 Feb 2019 07:33:00: #2 finished! INFO @ Fri, 15 Feb 2019 07:33:00: #2 predicted fragment length is 54 bps INFO @ Fri, 15 Feb 2019 07:33:00: #2 alternative fragment length(s) may be 54 bps INFO @ Fri, 15 Feb 2019 07:33:00: #2.2 Generate R script for model : SRX3360101.10_model.r WARNING @ Fri, 15 Feb 2019 07:33:01: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:33:01: #2 You may need to consider one of the other alternative d(s): 54 WARNING @ Fri, 15 Feb 2019 07:33:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:33:01: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:33:01: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:33:06: 95000000 INFO @ Fri, 15 Feb 2019 07:33:06: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:33:06: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:33:06: #1 total tags in treatment: 96822398 INFO @ Fri, 15 Feb 2019 07:33:06: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:33:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:33:08: #1 tags after filtering in treatment: 96822377 INFO @ Fri, 15 Feb 2019 07:33:08: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:33:08: #1 finished! INFO @ Fri, 15 Feb 2019 07:33:08: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:33:08: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:33:12: 96000000 INFO @ Fri, 15 Feb 2019 07:33:16: #2 number of paired peaks: 6481 INFO @ Fri, 15 Feb 2019 07:33:16: start model_add_line... INFO @ Fri, 15 Feb 2019 07:33:17: start X-correlation... INFO @ Fri, 15 Feb 2019 07:33:17: end of X-cor INFO @ Fri, 15 Feb 2019 07:33:17: #2 finished! INFO @ Fri, 15 Feb 2019 07:33:17: #2 predicted fragment length is 54 bps INFO @ Fri, 15 Feb 2019 07:33:17: #2 alternative fragment length(s) may be 54 bps INFO @ Fri, 15 Feb 2019 07:33:17: #2.2 Generate R script for model : SRX3360101.05_model.r WARNING @ Fri, 15 Feb 2019 07:33:17: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:33:17: #2 You may need to consider one of the other alternative d(s): 54 WARNING @ Fri, 15 Feb 2019 07:33:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:33:17: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:33:17: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:33:18: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:33:18: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:33:18: #1 total tags in treatment: 96822398 INFO @ Fri, 15 Feb 2019 07:33:18: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:33:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:33:20: #1 tags after filtering in treatment: 96822377 INFO @ Fri, 15 Feb 2019 07:33:20: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:33:20: #1 finished! INFO @ Fri, 15 Feb 2019 07:33:20: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:33:20: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:33:28: #2 number of paired peaks: 6481 INFO @ Fri, 15 Feb 2019 07:33:28: start model_add_line... INFO @ Fri, 15 Feb 2019 07:33:29: start X-correlation... INFO @ Fri, 15 Feb 2019 07:33:29: end of X-cor INFO @ Fri, 15 Feb 2019 07:33:29: #2 finished! INFO @ Fri, 15 Feb 2019 07:33:29: #2 predicted fragment length is 54 bps INFO @ Fri, 15 Feb 2019 07:33:29: #2 alternative fragment length(s) may be 54 bps INFO @ Fri, 15 Feb 2019 07:33:29: #2.2 Generate R script for model : SRX3360101.20_model.r WARNING @ Fri, 15 Feb 2019 07:33:29: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:33:29: #2 You may need to consider one of the other alternative d(s): 54 WARNING @ Fri, 15 Feb 2019 07:33:29: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:33:29: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:33:29: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:36:50: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:37:07: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:37:10: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:38:59: #4 Write output xls file... SRX3360101.10_peaks.xls INFO @ Fri, 15 Feb 2019 07:38:59: #4 Write peak in narrowPeak format file... SRX3360101.10_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:38:59: #4 Write summits bed file... SRX3360101.10_summits.bed INFO @ Fri, 15 Feb 2019 07:38:59: Done! pass1 - making usageList (58 chroms): 3 millis pass2 - checking and writing primary data (2014 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:39:26: #4 Write output xls file... SRX3360101.20_peaks.xls INFO @ Fri, 15 Feb 2019 07:39:26: #4 Write peak in narrowPeak format file... SRX3360101.20_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:39:26: #4 Write summits bed file... SRX3360101.20_summits.bed INFO @ Fri, 15 Feb 2019 07:39:26: Done! pass1 - making usageList (43 chroms): 4 millis pass2 - checking and writing primary data (834 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:39:27: #4 Write output xls file... SRX3360101.05_peaks.xls INFO @ Fri, 15 Feb 2019 07:39:27: #4 Write peak in narrowPeak format file... SRX3360101.05_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:39:27: #4 Write summits bed file... SRX3360101.05_summits.bed INFO @ Fri, 15 Feb 2019 07:39:27: Done! pass1 - making usageList (75 chroms): 3 millis pass2 - checking and writing primary data (4262 records, 4 fields): 11 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。