Job ID = 11632667 sra ファイルのダウンロード中... Completed: 1730832K bytes transferred in 42 seconds (333101K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 104313787 spots for /home/okishinya/chipatlas/results/rn6/SRX3360099/SRR6253205.sra Written 104313787 spots for /home/okishinya/chipatlas/results/rn6/SRX3360099/SRR6253205.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:25:50 104313787 reads; of these: 104313787 (100.00%) were unpaired; of these: 3555500 (3.41%) aligned 0 times 70539806 (67.62%) aligned exactly 1 time 30218481 (28.97%) aligned >1 times 96.59% overall alignment rate Time searching: 01:25:54 Overall time: 01:25:54 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 44 files... [bam_rmdupse_core] 4852248 / 100758287 = 0.0482 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 15 Feb 2019 07:13:03: # Command line: callpeak -t SRX3360099.bam -f BAM -g 2.15e9 -n SRX3360099.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3360099.20 # format = BAM # ChIP-seq file = ['SRX3360099.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:13:03: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:13:03: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:13:03: # Command line: callpeak -t SRX3360099.bam -f BAM -g 2.15e9 -n SRX3360099.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3360099.05 # format = BAM # ChIP-seq file = ['SRX3360099.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:13:03: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:13:03: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:13:03: # Command line: callpeak -t SRX3360099.bam -f BAM -g 2.15e9 -n SRX3360099.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3360099.10 # format = BAM # ChIP-seq file = ['SRX3360099.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:13:03: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:13:03: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:13:10: 1000000 INFO @ Fri, 15 Feb 2019 07:13:10: 1000000 INFO @ Fri, 15 Feb 2019 07:13:10: 1000000 INFO @ Fri, 15 Feb 2019 07:13:17: 2000000 INFO @ Fri, 15 Feb 2019 07:13:17: 2000000 INFO @ Fri, 15 Feb 2019 07:13:17: 2000000 INFO @ Fri, 15 Feb 2019 07:13:24: 3000000 INFO @ Fri, 15 Feb 2019 07:13:24: 3000000 INFO @ Fri, 15 Feb 2019 07:13:25: 3000000 INFO @ Fri, 15 Feb 2019 07:13:31: 4000000 INFO @ Fri, 15 Feb 2019 07:13:31: 4000000 INFO @ Fri, 15 Feb 2019 07:13:32: 4000000 INFO @ Fri, 15 Feb 2019 07:13:38: 5000000 INFO @ Fri, 15 Feb 2019 07:13:38: 5000000 INFO @ Fri, 15 Feb 2019 07:13:40: 5000000 INFO @ Fri, 15 Feb 2019 07:13:45: 6000000 INFO @ Fri, 15 Feb 2019 07:13:45: 6000000 INFO @ Fri, 15 Feb 2019 07:13:47: 6000000 INFO @ Fri, 15 Feb 2019 07:13:52: 7000000 INFO @ Fri, 15 Feb 2019 07:13:52: 7000000 INFO @ Fri, 15 Feb 2019 07:13:54: 7000000 INFO @ Fri, 15 Feb 2019 07:13:59: 8000000 INFO @ Fri, 15 Feb 2019 07:13:59: 8000000 INFO @ Fri, 15 Feb 2019 07:14:01: 8000000 INFO @ Fri, 15 Feb 2019 07:14:06: 9000000 INFO @ Fri, 15 Feb 2019 07:14:06: 9000000 INFO @ Fri, 15 Feb 2019 07:14:09: 9000000 INFO @ Fri, 15 Feb 2019 07:14:13: 10000000 INFO @ Fri, 15 Feb 2019 07:14:13: 10000000 INFO @ Fri, 15 Feb 2019 07:14:16: 10000000 INFO @ Fri, 15 Feb 2019 07:14:19: 11000000 INFO @ Fri, 15 Feb 2019 07:14:20: 11000000 INFO @ Fri, 15 Feb 2019 07:14:23: 11000000 INFO @ Fri, 15 Feb 2019 07:14:26: 12000000 INFO @ Fri, 15 Feb 2019 07:14:27: 12000000 INFO @ Fri, 15 Feb 2019 07:14:30: 12000000 INFO @ Fri, 15 Feb 2019 07:14:33: 13000000 INFO @ Fri, 15 Feb 2019 07:14:34: 13000000 INFO @ Fri, 15 Feb 2019 07:14:37: 13000000 INFO @ Fri, 15 Feb 2019 07:14:40: 14000000 INFO @ Fri, 15 Feb 2019 07:14:41: 14000000 INFO @ Fri, 15 Feb 2019 07:14:44: 14000000 INFO @ Fri, 15 Feb 2019 07:14:47: 15000000 INFO @ Fri, 15 Feb 2019 07:14:48: 15000000 INFO @ Fri, 15 Feb 2019 07:14:52: 15000000 INFO @ Fri, 15 Feb 2019 07:14:54: 16000000 INFO @ Fri, 15 Feb 2019 07:14:55: 16000000 INFO @ Fri, 15 Feb 2019 07:14:59: 16000000 INFO @ Fri, 15 Feb 2019 07:15:01: 17000000 INFO @ Fri, 15 Feb 2019 07:15:02: 17000000 INFO @ Fri, 15 Feb 2019 07:15:06: 17000000 INFO @ Fri, 15 Feb 2019 07:15:08: 18000000 INFO @ Fri, 15 Feb 2019 07:15:09: 18000000 INFO @ Fri, 15 Feb 2019 07:15:13: 18000000 INFO @ Fri, 15 Feb 2019 07:15:15: 19000000 INFO @ Fri, 15 Feb 2019 07:15:16: 19000000 INFO @ Fri, 15 Feb 2019 07:15:21: 19000000 INFO @ Fri, 15 Feb 2019 07:15:22: 20000000 INFO @ Fri, 15 Feb 2019 07:15:23: 20000000 INFO @ Fri, 15 Feb 2019 07:15:28: 20000000 INFO @ Fri, 15 Feb 2019 07:15:29: 21000000 INFO @ Fri, 15 Feb 2019 07:15:29: 21000000 INFO @ Fri, 15 Feb 2019 07:15:35: 21000000 INFO @ Fri, 15 Feb 2019 07:15:35: 22000000 INFO @ Fri, 15 Feb 2019 07:15:36: 22000000 INFO @ Fri, 15 Feb 2019 07:15:42: 23000000 INFO @ Fri, 15 Feb 2019 07:15:42: 22000000 INFO @ Fri, 15 Feb 2019 07:15:43: 23000000 INFO @ Fri, 15 Feb 2019 07:15:49: 24000000 INFO @ Fri, 15 Feb 2019 07:15:49: 23000000 INFO @ Fri, 15 Feb 2019 07:15:50: 24000000 INFO @ Fri, 15 Feb 2019 07:15:56: 25000000 INFO @ Fri, 15 Feb 2019 07:15:57: 24000000 INFO @ Fri, 15 Feb 2019 07:15:57: 25000000 INFO @ Fri, 15 Feb 2019 07:16:03: 26000000 INFO @ Fri, 15 Feb 2019 07:16:04: 25000000 INFO @ Fri, 15 Feb 2019 07:16:04: 26000000 INFO @ Fri, 15 Feb 2019 07:16:10: 27000000 INFO @ Fri, 15 Feb 2019 07:16:11: 27000000 INFO @ Fri, 15 Feb 2019 07:16:11: 26000000 INFO @ Fri, 15 Feb 2019 07:16:17: 28000000 INFO @ Fri, 15 Feb 2019 07:16:18: 28000000 INFO @ Fri, 15 Feb 2019 07:16:18: 27000000 INFO @ Fri, 15 Feb 2019 07:16:23: 29000000 INFO @ Fri, 15 Feb 2019 07:16:25: 29000000 INFO @ Fri, 15 Feb 2019 07:16:25: 28000000 INFO @ Fri, 15 Feb 2019 07:16:30: 30000000 INFO @ Fri, 15 Feb 2019 07:16:31: 30000000 INFO @ Fri, 15 Feb 2019 07:16:33: 29000000 INFO @ Fri, 15 Feb 2019 07:16:37: 31000000 INFO @ Fri, 15 Feb 2019 07:16:38: 31000000 INFO @ Fri, 15 Feb 2019 07:16:40: 30000000 INFO @ Fri, 15 Feb 2019 07:16:44: 32000000 INFO @ Fri, 15 Feb 2019 07:16:45: 32000000 INFO @ Fri, 15 Feb 2019 07:16:47: 31000000 INFO @ Fri, 15 Feb 2019 07:16:51: 33000000 INFO @ Fri, 15 Feb 2019 07:16:52: 33000000 INFO @ Fri, 15 Feb 2019 07:16:54: 32000000 INFO @ Fri, 15 Feb 2019 07:16:58: 34000000 INFO @ Fri, 15 Feb 2019 07:16:59: 34000000 INFO @ Fri, 15 Feb 2019 07:17:01: 33000000 INFO @ Fri, 15 Feb 2019 07:17:05: 35000000 INFO @ Fri, 15 Feb 2019 07:17:06: 35000000 INFO @ Fri, 15 Feb 2019 07:17:09: 34000000 INFO @ Fri, 15 Feb 2019 07:17:11: 36000000 INFO @ Fri, 15 Feb 2019 07:17:13: 36000000 INFO @ Fri, 15 Feb 2019 07:17:16: 35000000 INFO @ Fri, 15 Feb 2019 07:17:18: 37000000 INFO @ Fri, 15 Feb 2019 07:17:20: 37000000 INFO @ Fri, 15 Feb 2019 07:17:23: 36000000 INFO @ Fri, 15 Feb 2019 07:17:25: 38000000 INFO @ Fri, 15 Feb 2019 07:17:27: 38000000 INFO @ Fri, 15 Feb 2019 07:17:30: 37000000 INFO @ Fri, 15 Feb 2019 07:17:32: 39000000 INFO @ Fri, 15 Feb 2019 07:17:33: 39000000 INFO @ Fri, 15 Feb 2019 07:17:37: 38000000 INFO @ Fri, 15 Feb 2019 07:17:39: 40000000 INFO @ Fri, 15 Feb 2019 07:17:40: 40000000 INFO @ Fri, 15 Feb 2019 07:17:44: 39000000 INFO @ Fri, 15 Feb 2019 07:17:45: 41000000 INFO @ Fri, 15 Feb 2019 07:17:47: 41000000 INFO @ Fri, 15 Feb 2019 07:17:51: 40000000 INFO @ Fri, 15 Feb 2019 07:17:52: 42000000 INFO @ Fri, 15 Feb 2019 07:17:54: 42000000 INFO @ Fri, 15 Feb 2019 07:17:59: 41000000 INFO @ Fri, 15 Feb 2019 07:17:59: 43000000 INFO @ Fri, 15 Feb 2019 07:18:01: 43000000 INFO @ Fri, 15 Feb 2019 07:18:06: 42000000 INFO @ Fri, 15 Feb 2019 07:18:06: 44000000 INFO @ Fri, 15 Feb 2019 07:18:08: 44000000 INFO @ Fri, 15 Feb 2019 07:18:13: 45000000 INFO @ Fri, 15 Feb 2019 07:18:13: 43000000 INFO @ Fri, 15 Feb 2019 07:18:14: 45000000 INFO @ Fri, 15 Feb 2019 07:18:20: 46000000 INFO @ Fri, 15 Feb 2019 07:18:20: 44000000 INFO @ Fri, 15 Feb 2019 07:18:21: 46000000 INFO @ Fri, 15 Feb 2019 07:18:26: 47000000 INFO @ Fri, 15 Feb 2019 07:18:27: 45000000 INFO @ Fri, 15 Feb 2019 07:18:28: 47000000 INFO @ Fri, 15 Feb 2019 07:18:33: 48000000 INFO @ Fri, 15 Feb 2019 07:18:35: 46000000 INFO @ Fri, 15 Feb 2019 07:18:35: 48000000 INFO @ Fri, 15 Feb 2019 07:18:40: 49000000 INFO @ Fri, 15 Feb 2019 07:18:42: 49000000 INFO @ Fri, 15 Feb 2019 07:18:42: 47000000 INFO @ Fri, 15 Feb 2019 07:18:47: 50000000 INFO @ Fri, 15 Feb 2019 07:18:48: 50000000 INFO @ Fri, 15 Feb 2019 07:18:49: 48000000 INFO @ Fri, 15 Feb 2019 07:18:53: 51000000 INFO @ Fri, 15 Feb 2019 07:18:55: 51000000 INFO @ Fri, 15 Feb 2019 07:18:56: 49000000 INFO @ Fri, 15 Feb 2019 07:19:00: 52000000 INFO @ Fri, 15 Feb 2019 07:19:02: 52000000 INFO @ Fri, 15 Feb 2019 07:19:03: 50000000 INFO @ Fri, 15 Feb 2019 07:19:07: 53000000 INFO @ Fri, 15 Feb 2019 07:19:09: 53000000 INFO @ Fri, 15 Feb 2019 07:19:10: 51000000 INFO @ Fri, 15 Feb 2019 07:19:14: 54000000 INFO @ Fri, 15 Feb 2019 07:19:16: 54000000 INFO @ Fri, 15 Feb 2019 07:19:17: 52000000 INFO @ Fri, 15 Feb 2019 07:19:21: 55000000 INFO @ Fri, 15 Feb 2019 07:19:22: 55000000 INFO @ Fri, 15 Feb 2019 07:19:25: 53000000 INFO @ Fri, 15 Feb 2019 07:19:28: 56000000 INFO @ Fri, 15 Feb 2019 07:19:29: 56000000 INFO @ Fri, 15 Feb 2019 07:19:32: 54000000 INFO @ Fri, 15 Feb 2019 07:19:34: 57000000 INFO @ Fri, 15 Feb 2019 07:19:36: 57000000 INFO @ Fri, 15 Feb 2019 07:19:39: 55000000 INFO @ Fri, 15 Feb 2019 07:19:41: 58000000 INFO @ Fri, 15 Feb 2019 07:19:43: 58000000 INFO @ Fri, 15 Feb 2019 07:19:46: 56000000 INFO @ Fri, 15 Feb 2019 07:19:48: 59000000 INFO @ Fri, 15 Feb 2019 07:19:50: 59000000 INFO @ Fri, 15 Feb 2019 07:19:53: 57000000 INFO @ Fri, 15 Feb 2019 07:19:55: 60000000 INFO @ Fri, 15 Feb 2019 07:19:57: 60000000 INFO @ Fri, 15 Feb 2019 07:20:00: 58000000 INFO @ Fri, 15 Feb 2019 07:20:01: 61000000 INFO @ Fri, 15 Feb 2019 07:20:04: 61000000 INFO @ Fri, 15 Feb 2019 07:20:06: 59000000 INFO @ Fri, 15 Feb 2019 07:20:08: 62000000 INFO @ Fri, 15 Feb 2019 07:20:11: 62000000 INFO @ Fri, 15 Feb 2019 07:20:13: 60000000 INFO @ Fri, 15 Feb 2019 07:20:15: 63000000 INFO @ Fri, 15 Feb 2019 07:20:18: 63000000 INFO @ Fri, 15 Feb 2019 07:20:20: 61000000 INFO @ Fri, 15 Feb 2019 07:20:22: 64000000 INFO @ Fri, 15 Feb 2019 07:20:26: 64000000 INFO @ Fri, 15 Feb 2019 07:20:27: 62000000 INFO @ Fri, 15 Feb 2019 07:20:29: 65000000 INFO @ Fri, 15 Feb 2019 07:20:33: 65000000 INFO @ Fri, 15 Feb 2019 07:20:34: 63000000 INFO @ Fri, 15 Feb 2019 07:20:36: 66000000 INFO @ Fri, 15 Feb 2019 07:20:40: 66000000 INFO @ Fri, 15 Feb 2019 07:20:41: 64000000 INFO @ Fri, 15 Feb 2019 07:20:43: 67000000 INFO @ Fri, 15 Feb 2019 07:20:47: 67000000 INFO @ Fri, 15 Feb 2019 07:20:47: 65000000 INFO @ Fri, 15 Feb 2019 07:20:49: 68000000 INFO @ Fri, 15 Feb 2019 07:20:54: 68000000 INFO @ Fri, 15 Feb 2019 07:20:54: 66000000 INFO @ Fri, 15 Feb 2019 07:20:56: 69000000 INFO @ Fri, 15 Feb 2019 07:21:01: 69000000 INFO @ Fri, 15 Feb 2019 07:21:01: 67000000 INFO @ Fri, 15 Feb 2019 07:21:03: 70000000 INFO @ Fri, 15 Feb 2019 07:21:08: 68000000 INFO @ Fri, 15 Feb 2019 07:21:08: 70000000 INFO @ Fri, 15 Feb 2019 07:21:10: 71000000 INFO @ Fri, 15 Feb 2019 07:21:15: 69000000 INFO @ Fri, 15 Feb 2019 07:21:15: 71000000 INFO @ Fri, 15 Feb 2019 07:21:17: 72000000 INFO @ Fri, 15 Feb 2019 07:21:22: 70000000 INFO @ Fri, 15 Feb 2019 07:21:22: 72000000 INFO @ Fri, 15 Feb 2019 07:21:24: 73000000 INFO @ Fri, 15 Feb 2019 07:21:28: 71000000 INFO @ Fri, 15 Feb 2019 07:21:30: 73000000 INFO @ Fri, 15 Feb 2019 07:21:31: 74000000 INFO @ Fri, 15 Feb 2019 07:21:35: 72000000 INFO @ Fri, 15 Feb 2019 07:21:37: 74000000 INFO @ Fri, 15 Feb 2019 07:21:38: 75000000 INFO @ Fri, 15 Feb 2019 07:21:42: 73000000 INFO @ Fri, 15 Feb 2019 07:21:44: 75000000 INFO @ Fri, 15 Feb 2019 07:21:44: 76000000 INFO @ Fri, 15 Feb 2019 07:21:49: 74000000 INFO @ Fri, 15 Feb 2019 07:21:51: 76000000 INFO @ Fri, 15 Feb 2019 07:21:51: 77000000 INFO @ Fri, 15 Feb 2019 07:21:56: 75000000 INFO @ Fri, 15 Feb 2019 07:21:58: 77000000 INFO @ Fri, 15 Feb 2019 07:21:58: 78000000 INFO @ Fri, 15 Feb 2019 07:22:03: 76000000 INFO @ Fri, 15 Feb 2019 07:22:05: 78000000 INFO @ Fri, 15 Feb 2019 07:22:05: 79000000 INFO @ Fri, 15 Feb 2019 07:22:09: 77000000 INFO @ Fri, 15 Feb 2019 07:22:12: 80000000 INFO @ Fri, 15 Feb 2019 07:22:12: 79000000 INFO @ Fri, 15 Feb 2019 07:22:16: 78000000 INFO @ Fri, 15 Feb 2019 07:22:19: 81000000 INFO @ Fri, 15 Feb 2019 07:22:19: 80000000 INFO @ Fri, 15 Feb 2019 07:22:23: 79000000 INFO @ Fri, 15 Feb 2019 07:22:25: 82000000 INFO @ Fri, 15 Feb 2019 07:22:26: 81000000 INFO @ Fri, 15 Feb 2019 07:22:30: 80000000 INFO @ Fri, 15 Feb 2019 07:22:32: 83000000 INFO @ Fri, 15 Feb 2019 07:22:33: 82000000 INFO @ Fri, 15 Feb 2019 07:22:37: 81000000 INFO @ Fri, 15 Feb 2019 07:22:39: 84000000 INFO @ Fri, 15 Feb 2019 07:22:40: 83000000 INFO @ Fri, 15 Feb 2019 07:22:43: 82000000 INFO @ Fri, 15 Feb 2019 07:22:46: 85000000 INFO @ Fri, 15 Feb 2019 07:22:47: 84000000 INFO @ Fri, 15 Feb 2019 07:22:50: 83000000 INFO @ Fri, 15 Feb 2019 07:22:53: 86000000 INFO @ Fri, 15 Feb 2019 07:22:54: 85000000 INFO @ Fri, 15 Feb 2019 07:22:57: 84000000 INFO @ Fri, 15 Feb 2019 07:22:59: 87000000 INFO @ Fri, 15 Feb 2019 07:23:02: 86000000 INFO @ Fri, 15 Feb 2019 07:23:04: 85000000 INFO @ Fri, 15 Feb 2019 07:23:06: 88000000 INFO @ Fri, 15 Feb 2019 07:23:09: 87000000 INFO @ Fri, 15 Feb 2019 07:23:11: 86000000 INFO @ Fri, 15 Feb 2019 07:23:13: 89000000 INFO @ Fri, 15 Feb 2019 07:23:16: 88000000 INFO @ Fri, 15 Feb 2019 07:23:18: 87000000 INFO @ Fri, 15 Feb 2019 07:23:20: 90000000 INFO @ Fri, 15 Feb 2019 07:23:23: 89000000 INFO @ Fri, 15 Feb 2019 07:23:25: 88000000 INFO @ Fri, 15 Feb 2019 07:23:27: 91000000 INFO @ Fri, 15 Feb 2019 07:23:30: 90000000 INFO @ Fri, 15 Feb 2019 07:23:31: 89000000 INFO @ Fri, 15 Feb 2019 07:23:34: 92000000 INFO @ Fri, 15 Feb 2019 07:23:37: 91000000 INFO @ Fri, 15 Feb 2019 07:23:38: 90000000 INFO @ Fri, 15 Feb 2019 07:23:41: 93000000 INFO @ Fri, 15 Feb 2019 07:23:44: 92000000 INFO @ Fri, 15 Feb 2019 07:23:45: 91000000 INFO @ Fri, 15 Feb 2019 07:23:48: 94000000 INFO @ Fri, 15 Feb 2019 07:23:52: 93000000 INFO @ Fri, 15 Feb 2019 07:23:52: 92000000 INFO @ Fri, 15 Feb 2019 07:23:55: 95000000 INFO @ Fri, 15 Feb 2019 07:23:59: 94000000 INFO @ Fri, 15 Feb 2019 07:23:59: 93000000 INFO @ Fri, 15 Feb 2019 07:24:02: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:24:02: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:24:02: #1 total tags in treatment: 95906039 INFO @ Fri, 15 Feb 2019 07:24:02: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:24:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:24:04: #1 tags after filtering in treatment: 95906019 INFO @ Fri, 15 Feb 2019 07:24:04: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:24:04: #1 finished! INFO @ Fri, 15 Feb 2019 07:24:04: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:24:04: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:24:06: 95000000 INFO @ Fri, 15 Feb 2019 07:24:06: 94000000 INFO @ Fri, 15 Feb 2019 07:24:12: #2 number of paired peaks: 6391 INFO @ Fri, 15 Feb 2019 07:24:12: start model_add_line... INFO @ Fri, 15 Feb 2019 07:24:13: start X-correlation... INFO @ Fri, 15 Feb 2019 07:24:13: end of X-cor INFO @ Fri, 15 Feb 2019 07:24:13: #2 finished! INFO @ Fri, 15 Feb 2019 07:24:13: #2 predicted fragment length is 52 bps INFO @ Fri, 15 Feb 2019 07:24:13: #2 alternative fragment length(s) may be 52 bps INFO @ Fri, 15 Feb 2019 07:24:13: #2.2 Generate R script for model : SRX3360099.10_model.r WARNING @ Fri, 15 Feb 2019 07:24:13: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:24:13: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Fri, 15 Feb 2019 07:24:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:24:13: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:24:13: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:24:13: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:24:13: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:24:13: #1 total tags in treatment: 95906039 INFO @ Fri, 15 Feb 2019 07:24:13: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:24:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:24:13: 95000000 INFO @ Fri, 15 Feb 2019 07:24:15: #1 tags after filtering in treatment: 95906019 INFO @ Fri, 15 Feb 2019 07:24:15: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:24:15: #1 finished! INFO @ Fri, 15 Feb 2019 07:24:15: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:24:15: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:24:20: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:24:20: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:24:20: #1 total tags in treatment: 95906039 INFO @ Fri, 15 Feb 2019 07:24:20: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:24:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:24:22: #1 tags after filtering in treatment: 95906019 INFO @ Fri, 15 Feb 2019 07:24:22: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:24:22: #1 finished! INFO @ Fri, 15 Feb 2019 07:24:22: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:24:22: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:24:23: #2 number of paired peaks: 6391 INFO @ Fri, 15 Feb 2019 07:24:23: start model_add_line... INFO @ Fri, 15 Feb 2019 07:24:24: start X-correlation... INFO @ Fri, 15 Feb 2019 07:24:24: end of X-cor INFO @ Fri, 15 Feb 2019 07:24:24: #2 finished! INFO @ Fri, 15 Feb 2019 07:24:24: #2 predicted fragment length is 52 bps INFO @ Fri, 15 Feb 2019 07:24:24: #2 alternative fragment length(s) may be 52 bps INFO @ Fri, 15 Feb 2019 07:24:24: #2.2 Generate R script for model : SRX3360099.20_model.r WARNING @ Fri, 15 Feb 2019 07:24:24: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:24:24: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Fri, 15 Feb 2019 07:24:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:24:24: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:24:24: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:24:30: #2 number of paired peaks: 6391 INFO @ Fri, 15 Feb 2019 07:24:30: start model_add_line... INFO @ Fri, 15 Feb 2019 07:24:31: start X-correlation... INFO @ Fri, 15 Feb 2019 07:24:31: end of X-cor INFO @ Fri, 15 Feb 2019 07:24:31: #2 finished! INFO @ Fri, 15 Feb 2019 07:24:31: #2 predicted fragment length is 52 bps INFO @ Fri, 15 Feb 2019 07:24:31: #2 alternative fragment length(s) may be 52 bps INFO @ Fri, 15 Feb 2019 07:24:31: #2.2 Generate R script for model : SRX3360099.05_model.r WARNING @ Fri, 15 Feb 2019 07:24:31: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:24:31: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Fri, 15 Feb 2019 07:24:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:24:31: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:24:31: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:27:58: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:28:06: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:28:24: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:30:02: #4 Write output xls file... SRX3360099.10_peaks.xls INFO @ Fri, 15 Feb 2019 07:30:02: #4 Write peak in narrowPeak format file... SRX3360099.10_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:30:02: #4 Write summits bed file... SRX3360099.10_summits.bed INFO @ Fri, 15 Feb 2019 07:30:02: Done! pass1 - making usageList (57 chroms): 6 millis pass2 - checking and writing primary data (1978 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:30:28: #4 Write output xls file... SRX3360099.05_peaks.xls INFO @ Fri, 15 Feb 2019 07:30:28: #4 Write peak in narrowPeak format file... SRX3360099.05_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:30:28: #4 Write summits bed file... SRX3360099.05_summits.bed INFO @ Fri, 15 Feb 2019 07:30:28: Done! pass1 - making usageList (78 chroms): 9 millis pass2 - checking and writing primary data (4040 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:30:32: #4 Write output xls file... SRX3360099.20_peaks.xls INFO @ Fri, 15 Feb 2019 07:30:32: #4 Write peak in narrowPeak format file... SRX3360099.20_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:30:32: #4 Write summits bed file... SRX3360099.20_summits.bed INFO @ Fri, 15 Feb 2019 07:30:32: Done! pass1 - making usageList (41 chroms): 4 millis pass2 - checking and writing primary data (825 records, 4 fields): 12 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。