Job ID = 11632665 sra ファイルのダウンロード中... Completed: 1405623K bytes transferred in 39 seconds (293366K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 85441488 spots for /home/okishinya/chipatlas/results/rn6/SRX3360097/SRR6253203.sra Written 85441488 spots for /home/okishinya/chipatlas/results/rn6/SRX3360097/SRR6253203.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:11:08 85441488 reads; of these: 85441488 (100.00%) were unpaired; of these: 3071559 (3.59%) aligned 0 times 57588016 (67.40%) aligned exactly 1 time 24781913 (29.00%) aligned >1 times 96.41% overall alignment rate Time searching: 01:11:12 Overall time: 01:11:12 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 3689933 / 82369929 = 0.0448 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 15 Feb 2019 06:52:25: # Command line: callpeak -t SRX3360097.bam -f BAM -g 2.15e9 -n SRX3360097.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3360097.05 # format = BAM # ChIP-seq file = ['SRX3360097.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 06:52:25: # Command line: callpeak -t SRX3360097.bam -f BAM -g 2.15e9 -n SRX3360097.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3360097.10 # format = BAM # ChIP-seq file = ['SRX3360097.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 06:52:25: #1 read tag files... INFO @ Fri, 15 Feb 2019 06:52:25: #1 read tag files... INFO @ Fri, 15 Feb 2019 06:52:25: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 06:52:25: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 06:52:25: # Command line: callpeak -t SRX3360097.bam -f BAM -g 2.15e9 -n SRX3360097.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3360097.20 # format = BAM # ChIP-seq file = ['SRX3360097.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 06:52:25: #1 read tag files... INFO @ Fri, 15 Feb 2019 06:52:25: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 06:52:33: 1000000 INFO @ Fri, 15 Feb 2019 06:52:33: 1000000 INFO @ Fri, 15 Feb 2019 06:52:33: 1000000 INFO @ Fri, 15 Feb 2019 06:52:40: 2000000 INFO @ Fri, 15 Feb 2019 06:52:40: 2000000 INFO @ Fri, 15 Feb 2019 06:52:40: 2000000 INFO @ Fri, 15 Feb 2019 06:52:47: 3000000 INFO @ Fri, 15 Feb 2019 06:52:47: 3000000 INFO @ Fri, 15 Feb 2019 06:52:48: 3000000 INFO @ Fri, 15 Feb 2019 06:52:55: 4000000 INFO @ Fri, 15 Feb 2019 06:52:55: 4000000 INFO @ Fri, 15 Feb 2019 06:52:55: 4000000 INFO @ Fri, 15 Feb 2019 06:53:02: 5000000 INFO @ Fri, 15 Feb 2019 06:53:02: 5000000 INFO @ Fri, 15 Feb 2019 06:53:03: 5000000 INFO @ Fri, 15 Feb 2019 06:53:10: 6000000 INFO @ Fri, 15 Feb 2019 06:53:10: 6000000 INFO @ Fri, 15 Feb 2019 06:53:10: 6000000 INFO @ Fri, 15 Feb 2019 06:53:17: 7000000 INFO @ Fri, 15 Feb 2019 06:53:17: 7000000 INFO @ Fri, 15 Feb 2019 06:53:18: 7000000 INFO @ Fri, 15 Feb 2019 06:53:25: 8000000 INFO @ Fri, 15 Feb 2019 06:53:25: 8000000 INFO @ Fri, 15 Feb 2019 06:53:25: 8000000 INFO @ Fri, 15 Feb 2019 06:53:32: 9000000 INFO @ Fri, 15 Feb 2019 06:53:32: 9000000 INFO @ Fri, 15 Feb 2019 06:53:33: 9000000 INFO @ Fri, 15 Feb 2019 06:53:39: 10000000 INFO @ Fri, 15 Feb 2019 06:53:39: 10000000 INFO @ Fri, 15 Feb 2019 06:53:40: 10000000 INFO @ Fri, 15 Feb 2019 06:53:47: 11000000 INFO @ Fri, 15 Feb 2019 06:53:47: 11000000 INFO @ Fri, 15 Feb 2019 06:53:48: 11000000 INFO @ Fri, 15 Feb 2019 06:53:54: 12000000 INFO @ Fri, 15 Feb 2019 06:53:54: 12000000 INFO @ Fri, 15 Feb 2019 06:53:55: 12000000 INFO @ Fri, 15 Feb 2019 06:54:02: 13000000 INFO @ Fri, 15 Feb 2019 06:54:02: 13000000 INFO @ Fri, 15 Feb 2019 06:54:02: 13000000 INFO @ Fri, 15 Feb 2019 06:54:09: 14000000 INFO @ Fri, 15 Feb 2019 06:54:09: 14000000 INFO @ Fri, 15 Feb 2019 06:54:10: 14000000 INFO @ Fri, 15 Feb 2019 06:54:17: 15000000 INFO @ Fri, 15 Feb 2019 06:54:17: 15000000 INFO @ Fri, 15 Feb 2019 06:54:17: 15000000 INFO @ Fri, 15 Feb 2019 06:54:24: 16000000 INFO @ Fri, 15 Feb 2019 06:54:24: 16000000 INFO @ Fri, 15 Feb 2019 06:54:25: 16000000 INFO @ Fri, 15 Feb 2019 06:54:31: 17000000 INFO @ Fri, 15 Feb 2019 06:54:31: 17000000 INFO @ Fri, 15 Feb 2019 06:54:32: 17000000 INFO @ Fri, 15 Feb 2019 06:54:39: 18000000 INFO @ Fri, 15 Feb 2019 06:54:39: 18000000 INFO @ Fri, 15 Feb 2019 06:54:40: 18000000 INFO @ Fri, 15 Feb 2019 06:54:46: 19000000 INFO @ Fri, 15 Feb 2019 06:54:46: 19000000 INFO @ Fri, 15 Feb 2019 06:54:47: 19000000 INFO @ Fri, 15 Feb 2019 06:54:54: 20000000 INFO @ Fri, 15 Feb 2019 06:54:54: 20000000 INFO @ Fri, 15 Feb 2019 06:54:54: 20000000 INFO @ Fri, 15 Feb 2019 06:55:01: 21000000 INFO @ Fri, 15 Feb 2019 06:55:01: 21000000 INFO @ Fri, 15 Feb 2019 06:55:02: 21000000 INFO @ Fri, 15 Feb 2019 06:55:08: 22000000 INFO @ Fri, 15 Feb 2019 06:55:08: 22000000 INFO @ Fri, 15 Feb 2019 06:55:09: 22000000 INFO @ Fri, 15 Feb 2019 06:55:15: 23000000 INFO @ Fri, 15 Feb 2019 06:55:16: 23000000 INFO @ Fri, 15 Feb 2019 06:55:17: 23000000 INFO @ Fri, 15 Feb 2019 06:55:23: 24000000 INFO @ Fri, 15 Feb 2019 06:55:23: 24000000 INFO @ Fri, 15 Feb 2019 06:55:24: 24000000 INFO @ Fri, 15 Feb 2019 06:55:30: 25000000 INFO @ Fri, 15 Feb 2019 06:55:30: 25000000 INFO @ Fri, 15 Feb 2019 06:55:31: 25000000 INFO @ Fri, 15 Feb 2019 06:55:37: 26000000 INFO @ Fri, 15 Feb 2019 06:55:37: 26000000 INFO @ Fri, 15 Feb 2019 06:55:39: 26000000 INFO @ Fri, 15 Feb 2019 06:55:45: 27000000 INFO @ Fri, 15 Feb 2019 06:55:45: 27000000 INFO @ Fri, 15 Feb 2019 06:55:46: 27000000 INFO @ Fri, 15 Feb 2019 06:55:52: 28000000 INFO @ Fri, 15 Feb 2019 06:55:52: 28000000 INFO @ Fri, 15 Feb 2019 06:55:53: 28000000 INFO @ Fri, 15 Feb 2019 06:55:59: 29000000 INFO @ Fri, 15 Feb 2019 06:55:59: 29000000 INFO @ Fri, 15 Feb 2019 06:56:01: 29000000 INFO @ Fri, 15 Feb 2019 06:56:06: 30000000 INFO @ Fri, 15 Feb 2019 06:56:07: 30000000 INFO @ Fri, 15 Feb 2019 06:56:08: 30000000 INFO @ Fri, 15 Feb 2019 06:56:14: 31000000 INFO @ Fri, 15 Feb 2019 06:56:14: 31000000 INFO @ Fri, 15 Feb 2019 06:56:15: 31000000 INFO @ Fri, 15 Feb 2019 06:56:21: 32000000 INFO @ Fri, 15 Feb 2019 06:56:21: 32000000 INFO @ Fri, 15 Feb 2019 06:56:22: 32000000 INFO @ Fri, 15 Feb 2019 06:56:28: 33000000 INFO @ Fri, 15 Feb 2019 06:56:29: 33000000 INFO @ Fri, 15 Feb 2019 06:56:29: 33000000 INFO @ Fri, 15 Feb 2019 06:56:36: 34000000 INFO @ Fri, 15 Feb 2019 06:56:36: 34000000 INFO @ Fri, 15 Feb 2019 06:56:37: 34000000 INFO @ Fri, 15 Feb 2019 06:56:43: 35000000 INFO @ Fri, 15 Feb 2019 06:56:43: 35000000 INFO @ Fri, 15 Feb 2019 06:56:44: 35000000 INFO @ Fri, 15 Feb 2019 06:56:50: 36000000 INFO @ Fri, 15 Feb 2019 06:56:51: 36000000 INFO @ Fri, 15 Feb 2019 06:56:51: 36000000 INFO @ Fri, 15 Feb 2019 06:56:58: 37000000 INFO @ Fri, 15 Feb 2019 06:56:58: 37000000 INFO @ Fri, 15 Feb 2019 06:56:58: 37000000 INFO @ Fri, 15 Feb 2019 06:57:05: 38000000 INFO @ Fri, 15 Feb 2019 06:57:05: 38000000 INFO @ Fri, 15 Feb 2019 06:57:06: 38000000 INFO @ Fri, 15 Feb 2019 06:57:12: 39000000 INFO @ Fri, 15 Feb 2019 06:57:13: 39000000 INFO @ Fri, 15 Feb 2019 06:57:13: 39000000 INFO @ Fri, 15 Feb 2019 06:57:20: 40000000 INFO @ Fri, 15 Feb 2019 06:57:20: 40000000 INFO @ Fri, 15 Feb 2019 06:57:20: 40000000 INFO @ Fri, 15 Feb 2019 06:57:27: 41000000 INFO @ Fri, 15 Feb 2019 06:57:28: 41000000 INFO @ Fri, 15 Feb 2019 06:57:28: 41000000 INFO @ Fri, 15 Feb 2019 06:57:34: 42000000 INFO @ Fri, 15 Feb 2019 06:57:35: 42000000 INFO @ Fri, 15 Feb 2019 06:57:35: 42000000 INFO @ Fri, 15 Feb 2019 06:57:42: 43000000 INFO @ Fri, 15 Feb 2019 06:57:42: 43000000 INFO @ Fri, 15 Feb 2019 06:57:42: 43000000 INFO @ Fri, 15 Feb 2019 06:57:49: 44000000 INFO @ Fri, 15 Feb 2019 06:57:50: 44000000 INFO @ Fri, 15 Feb 2019 06:57:50: 44000000 INFO @ Fri, 15 Feb 2019 06:57:57: 45000000 INFO @ Fri, 15 Feb 2019 06:57:57: 45000000 INFO @ Fri, 15 Feb 2019 06:57:57: 45000000 INFO @ Fri, 15 Feb 2019 06:58:04: 46000000 INFO @ Fri, 15 Feb 2019 06:58:04: 46000000 INFO @ Fri, 15 Feb 2019 06:58:05: 46000000 INFO @ Fri, 15 Feb 2019 06:58:11: 47000000 INFO @ Fri, 15 Feb 2019 06:58:11: 47000000 INFO @ Fri, 15 Feb 2019 06:58:12: 47000000 INFO @ Fri, 15 Feb 2019 06:58:19: 48000000 INFO @ Fri, 15 Feb 2019 06:58:19: 48000000 INFO @ Fri, 15 Feb 2019 06:58:20: 48000000 INFO @ Fri, 15 Feb 2019 06:58:26: 49000000 INFO @ Fri, 15 Feb 2019 06:58:26: 49000000 INFO @ Fri, 15 Feb 2019 06:58:27: 49000000 INFO @ Fri, 15 Feb 2019 06:58:33: 50000000 INFO @ Fri, 15 Feb 2019 06:58:34: 50000000 INFO @ Fri, 15 Feb 2019 06:58:35: 50000000 INFO @ Fri, 15 Feb 2019 06:58:40: 51000000 INFO @ Fri, 15 Feb 2019 06:58:42: 51000000 INFO @ Fri, 15 Feb 2019 06:58:42: 51000000 INFO @ Fri, 15 Feb 2019 06:58:47: 52000000 INFO @ Fri, 15 Feb 2019 06:58:49: 52000000 INFO @ Fri, 15 Feb 2019 06:58:50: 52000000 INFO @ Fri, 15 Feb 2019 06:58:54: 53000000 INFO @ Fri, 15 Feb 2019 06:58:57: 53000000 INFO @ Fri, 15 Feb 2019 06:58:58: 53000000 INFO @ Fri, 15 Feb 2019 06:59:01: 54000000 INFO @ Fri, 15 Feb 2019 06:59:04: 54000000 INFO @ Fri, 15 Feb 2019 06:59:05: 54000000 INFO @ Fri, 15 Feb 2019 06:59:08: 55000000 INFO @ Fri, 15 Feb 2019 06:59:12: 55000000 INFO @ Fri, 15 Feb 2019 06:59:13: 55000000 INFO @ Fri, 15 Feb 2019 06:59:16: 56000000 INFO @ Fri, 15 Feb 2019 06:59:20: 56000000 INFO @ Fri, 15 Feb 2019 06:59:20: 56000000 INFO @ Fri, 15 Feb 2019 06:59:23: 57000000 INFO @ Fri, 15 Feb 2019 06:59:27: 57000000 INFO @ Fri, 15 Feb 2019 06:59:28: 57000000 INFO @ Fri, 15 Feb 2019 06:59:30: 58000000 INFO @ Fri, 15 Feb 2019 06:59:35: 58000000 INFO @ Fri, 15 Feb 2019 06:59:36: 58000000 INFO @ Fri, 15 Feb 2019 06:59:37: 59000000 INFO @ Fri, 15 Feb 2019 06:59:42: 59000000 INFO @ Fri, 15 Feb 2019 06:59:43: 59000000 INFO @ Fri, 15 Feb 2019 06:59:44: 60000000 INFO @ Fri, 15 Feb 2019 06:59:50: 60000000 INFO @ Fri, 15 Feb 2019 06:59:51: 60000000 INFO @ Fri, 15 Feb 2019 06:59:51: 61000000 INFO @ Fri, 15 Feb 2019 06:59:58: 61000000 INFO @ Fri, 15 Feb 2019 06:59:58: 62000000 INFO @ Fri, 15 Feb 2019 06:59:59: 61000000 INFO @ Fri, 15 Feb 2019 07:00:05: 62000000 INFO @ Fri, 15 Feb 2019 07:00:05: 63000000 INFO @ Fri, 15 Feb 2019 07:00:06: 62000000 INFO @ Fri, 15 Feb 2019 07:00:13: 64000000 INFO @ Fri, 15 Feb 2019 07:00:13: 63000000 INFO @ Fri, 15 Feb 2019 07:00:14: 63000000 INFO @ Fri, 15 Feb 2019 07:00:20: 65000000 INFO @ Fri, 15 Feb 2019 07:00:20: 64000000 INFO @ Fri, 15 Feb 2019 07:00:21: 64000000 INFO @ Fri, 15 Feb 2019 07:00:27: 66000000 INFO @ Fri, 15 Feb 2019 07:00:28: 65000000 INFO @ Fri, 15 Feb 2019 07:00:29: 65000000 INFO @ Fri, 15 Feb 2019 07:00:34: 67000000 INFO @ Fri, 15 Feb 2019 07:00:36: 66000000 INFO @ Fri, 15 Feb 2019 07:00:37: 66000000 INFO @ Fri, 15 Feb 2019 07:00:41: 68000000 INFO @ Fri, 15 Feb 2019 07:00:43: 67000000 INFO @ Fri, 15 Feb 2019 07:00:44: 67000000 INFO @ Fri, 15 Feb 2019 07:00:48: 69000000 INFO @ Fri, 15 Feb 2019 07:00:51: 68000000 INFO @ Fri, 15 Feb 2019 07:00:52: 68000000 INFO @ Fri, 15 Feb 2019 07:00:56: 70000000 INFO @ Fri, 15 Feb 2019 07:00:59: 69000000 INFO @ Fri, 15 Feb 2019 07:01:00: 69000000 INFO @ Fri, 15 Feb 2019 07:01:03: 71000000 INFO @ Fri, 15 Feb 2019 07:01:06: 70000000 INFO @ Fri, 15 Feb 2019 07:01:07: 70000000 INFO @ Fri, 15 Feb 2019 07:01:10: 72000000 INFO @ Fri, 15 Feb 2019 07:01:14: 71000000 INFO @ Fri, 15 Feb 2019 07:01:15: 71000000 INFO @ Fri, 15 Feb 2019 07:01:17: 73000000 INFO @ Fri, 15 Feb 2019 07:01:22: 72000000 INFO @ Fri, 15 Feb 2019 07:01:23: 72000000 INFO @ Fri, 15 Feb 2019 07:01:24: 74000000 INFO @ Fri, 15 Feb 2019 07:01:29: 73000000 INFO @ Fri, 15 Feb 2019 07:01:30: 73000000 INFO @ Fri, 15 Feb 2019 07:01:32: 75000000 INFO @ Fri, 15 Feb 2019 07:01:37: 74000000 INFO @ Fri, 15 Feb 2019 07:01:38: 74000000 INFO @ Fri, 15 Feb 2019 07:01:39: 76000000 INFO @ Fri, 15 Feb 2019 07:01:45: 75000000 INFO @ Fri, 15 Feb 2019 07:01:46: 75000000 INFO @ Fri, 15 Feb 2019 07:01:46: 77000000 INFO @ Fri, 15 Feb 2019 07:01:52: 76000000 INFO @ Fri, 15 Feb 2019 07:01:53: 78000000 INFO @ Fri, 15 Feb 2019 07:01:54: 76000000 INFO @ Fri, 15 Feb 2019 07:01:59: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:01:59: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:01:59: #1 total tags in treatment: 78679996 INFO @ Fri, 15 Feb 2019 07:01:59: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:01:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:02:00: 77000000 INFO @ Fri, 15 Feb 2019 07:02:01: #1 tags after filtering in treatment: 78679975 INFO @ Fri, 15 Feb 2019 07:02:01: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:02:01: #1 finished! INFO @ Fri, 15 Feb 2019 07:02:01: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:02:01: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:02:01: 77000000 INFO @ Fri, 15 Feb 2019 07:02:08: #2 number of paired peaks: 6803 INFO @ Fri, 15 Feb 2019 07:02:08: start model_add_line... INFO @ Fri, 15 Feb 2019 07:02:08: 78000000 INFO @ Fri, 15 Feb 2019 07:02:09: start X-correlation... INFO @ Fri, 15 Feb 2019 07:02:09: end of X-cor INFO @ Fri, 15 Feb 2019 07:02:09: #2 finished! INFO @ Fri, 15 Feb 2019 07:02:09: #2 predicted fragment length is 53 bps INFO @ Fri, 15 Feb 2019 07:02:09: #2 alternative fragment length(s) may be 53 bps INFO @ Fri, 15 Feb 2019 07:02:09: #2.2 Generate R script for model : SRX3360097.20_model.r WARNING @ Fri, 15 Feb 2019 07:02:09: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:02:09: #2 You may need to consider one of the other alternative d(s): 53 WARNING @ Fri, 15 Feb 2019 07:02:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:02:09: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:02:09: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:02:09: 78000000 INFO @ Fri, 15 Feb 2019 07:02:14: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:02:14: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:02:14: #1 total tags in treatment: 78679996 INFO @ Fri, 15 Feb 2019 07:02:14: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:02:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:02:15: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:02:15: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:02:15: #1 total tags in treatment: 78679996 INFO @ Fri, 15 Feb 2019 07:02:15: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:02:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:02:15: #1 tags after filtering in treatment: 78679975 INFO @ Fri, 15 Feb 2019 07:02:15: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:02:15: #1 finished! INFO @ Fri, 15 Feb 2019 07:02:15: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:02:15: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:02:17: #1 tags after filtering in treatment: 78679975 INFO @ Fri, 15 Feb 2019 07:02:17: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:02:17: #1 finished! INFO @ Fri, 15 Feb 2019 07:02:17: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:02:17: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:02:22: #2 number of paired peaks: 6803 INFO @ Fri, 15 Feb 2019 07:02:22: start model_add_line... INFO @ Fri, 15 Feb 2019 07:02:23: start X-correlation... INFO @ Fri, 15 Feb 2019 07:02:23: end of X-cor INFO @ Fri, 15 Feb 2019 07:02:23: #2 finished! INFO @ Fri, 15 Feb 2019 07:02:23: #2 predicted fragment length is 53 bps INFO @ Fri, 15 Feb 2019 07:02:23: #2 alternative fragment length(s) may be 53 bps INFO @ Fri, 15 Feb 2019 07:02:23: #2.2 Generate R script for model : SRX3360097.10_model.r WARNING @ Fri, 15 Feb 2019 07:02:23: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:02:23: #2 You may need to consider one of the other alternative d(s): 53 WARNING @ Fri, 15 Feb 2019 07:02:23: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:02:23: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:02:23: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:02:23: #2 number of paired peaks: 6803 INFO @ Fri, 15 Feb 2019 07:02:23: start model_add_line... INFO @ Fri, 15 Feb 2019 07:02:24: start X-correlation... INFO @ Fri, 15 Feb 2019 07:02:24: end of X-cor INFO @ Fri, 15 Feb 2019 07:02:24: #2 finished! INFO @ Fri, 15 Feb 2019 07:02:24: #2 predicted fragment length is 53 bps INFO @ Fri, 15 Feb 2019 07:02:24: #2 alternative fragment length(s) may be 53 bps INFO @ Fri, 15 Feb 2019 07:02:24: #2.2 Generate R script for model : SRX3360097.05_model.r WARNING @ Fri, 15 Feb 2019 07:02:24: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:02:24: #2 You may need to consider one of the other alternative d(s): 53 WARNING @ Fri, 15 Feb 2019 07:02:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:02:24: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:02:24: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:05:07: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:05:23: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:05:46: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:07:00: #4 Write output xls file... SRX3360097.05_peaks.xls INFO @ Fri, 15 Feb 2019 07:07:00: #4 Write peak in narrowPeak format file... SRX3360097.05_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:07:00: #4 Write summits bed file... SRX3360097.05_summits.bed INFO @ Fri, 15 Feb 2019 07:07:00: Done! pass1 - making usageList (73 chroms): 4 millis pass2 - checking and writing primary data (3765 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:07:02: #4 Write output xls file... SRX3360097.20_peaks.xls INFO @ Fri, 15 Feb 2019 07:07:02: #4 Write peak in narrowPeak format file... SRX3360097.20_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:07:02: #4 Write summits bed file... SRX3360097.20_summits.bed INFO @ Fri, 15 Feb 2019 07:07:02: Done! pass1 - making usageList (41 chroms): 4 millis pass2 - checking and writing primary data (784 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:07:35: #4 Write output xls file... SRX3360097.10_peaks.xls INFO @ Fri, 15 Feb 2019 07:07:35: #4 Write peak in narrowPeak format file... SRX3360097.10_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:07:35: #4 Write summits bed file... SRX3360097.10_summits.bed INFO @ Fri, 15 Feb 2019 07:07:35: Done! pass1 - making usageList (53 chroms): 3 millis pass2 - checking and writing primary data (1863 records, 4 fields): 8 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。