Job ID = 11632664 sra ファイルのダウンロード中... Completed: 1425972K bytes transferred in 33 seconds (347801K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 87002696 spots for /home/okishinya/chipatlas/results/rn6/SRX3360096/SRR6253202.sra Written 87002696 spots for /home/okishinya/chipatlas/results/rn6/SRX3360096/SRR6253202.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:04 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:17:17 87002696 reads; of these: 87002696 (100.00%) were unpaired; of these: 2373846 (2.73%) aligned 0 times 59315980 (68.18%) aligned exactly 1 time 25312870 (29.09%) aligned >1 times 97.27% overall alignment rate Time searching: 01:17:24 Overall time: 01:17:24 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 3734915 / 84628850 = 0.0441 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 15 Feb 2019 08:23:36: # Command line: callpeak -t SRX3360096.bam -f BAM -g 2.15e9 -n SRX3360096.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3360096.10 # format = BAM # ChIP-seq file = ['SRX3360096.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 08:23:36: #1 read tag files... INFO @ Fri, 15 Feb 2019 08:23:36: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 08:23:36: # Command line: callpeak -t SRX3360096.bam -f BAM -g 2.15e9 -n SRX3360096.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3360096.20 # format = BAM # ChIP-seq file = ['SRX3360096.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 08:23:36: #1 read tag files... INFO @ Fri, 15 Feb 2019 08:23:36: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 08:23:36: # Command line: callpeak -t SRX3360096.bam -f BAM -g 2.15e9 -n SRX3360096.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3360096.05 # format = BAM # ChIP-seq file = ['SRX3360096.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 08:23:36: #1 read tag files... INFO @ Fri, 15 Feb 2019 08:23:36: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 08:23:45: 1000000 INFO @ Fri, 15 Feb 2019 08:23:45: 1000000 INFO @ Fri, 15 Feb 2019 08:23:45: 1000000 INFO @ Fri, 15 Feb 2019 08:23:54: 2000000 INFO @ Fri, 15 Feb 2019 08:23:54: 2000000 INFO @ Fri, 15 Feb 2019 08:23:55: 2000000 INFO @ Fri, 15 Feb 2019 08:24:03: 3000000 INFO @ Fri, 15 Feb 2019 08:24:03: 3000000 INFO @ Fri, 15 Feb 2019 08:24:04: 3000000 INFO @ Fri, 15 Feb 2019 08:24:12: 4000000 INFO @ Fri, 15 Feb 2019 08:24:12: 4000000 INFO @ Fri, 15 Feb 2019 08:24:14: 4000000 INFO @ Fri, 15 Feb 2019 08:24:21: 5000000 INFO @ Fri, 15 Feb 2019 08:24:21: 5000000 INFO @ Fri, 15 Feb 2019 08:24:23: 5000000 INFO @ Fri, 15 Feb 2019 08:24:30: 6000000 INFO @ Fri, 15 Feb 2019 08:24:30: 6000000 INFO @ Fri, 15 Feb 2019 08:24:33: 6000000 INFO @ Fri, 15 Feb 2019 08:24:38: 7000000 INFO @ Fri, 15 Feb 2019 08:24:38: 7000000 INFO @ Fri, 15 Feb 2019 08:24:42: 7000000 INFO @ Fri, 15 Feb 2019 08:24:47: 8000000 INFO @ Fri, 15 Feb 2019 08:24:47: 8000000 INFO @ Fri, 15 Feb 2019 08:24:52: 8000000 INFO @ Fri, 15 Feb 2019 08:24:56: 9000000 INFO @ Fri, 15 Feb 2019 08:24:56: 9000000 INFO @ Fri, 15 Feb 2019 08:25:01: 9000000 INFO @ Fri, 15 Feb 2019 08:25:05: 10000000 INFO @ Fri, 15 Feb 2019 08:25:05: 10000000 INFO @ Fri, 15 Feb 2019 08:25:10: 10000000 INFO @ Fri, 15 Feb 2019 08:25:14: 11000000 INFO @ Fri, 15 Feb 2019 08:25:14: 11000000 INFO @ Fri, 15 Feb 2019 08:25:19: 11000000 INFO @ Fri, 15 Feb 2019 08:25:22: 12000000 INFO @ Fri, 15 Feb 2019 08:25:23: 12000000 INFO @ Fri, 15 Feb 2019 08:25:29: 12000000 INFO @ Fri, 15 Feb 2019 08:25:31: 13000000 INFO @ Fri, 15 Feb 2019 08:25:31: 13000000 INFO @ Fri, 15 Feb 2019 08:25:38: 13000000 INFO @ Fri, 15 Feb 2019 08:25:40: 14000000 INFO @ Fri, 15 Feb 2019 08:25:40: 14000000 INFO @ Fri, 15 Feb 2019 08:25:48: 14000000 INFO @ Fri, 15 Feb 2019 08:25:48: 15000000 INFO @ Fri, 15 Feb 2019 08:25:48: 15000000 INFO @ Fri, 15 Feb 2019 08:25:57: 16000000 INFO @ Fri, 15 Feb 2019 08:25:57: 16000000 INFO @ Fri, 15 Feb 2019 08:25:59: 15000000 INFO @ Fri, 15 Feb 2019 08:26:05: 17000000 INFO @ Fri, 15 Feb 2019 08:26:06: 17000000 INFO @ Fri, 15 Feb 2019 08:26:09: 16000000 INFO @ Fri, 15 Feb 2019 08:26:14: 18000000 INFO @ Fri, 15 Feb 2019 08:26:15: 18000000 INFO @ Fri, 15 Feb 2019 08:26:19: 17000000 INFO @ Fri, 15 Feb 2019 08:26:22: 19000000 INFO @ Fri, 15 Feb 2019 08:26:24: 19000000 INFO @ Fri, 15 Feb 2019 08:26:29: 18000000 INFO @ Fri, 15 Feb 2019 08:26:31: 20000000 INFO @ Fri, 15 Feb 2019 08:26:33: 20000000 INFO @ Fri, 15 Feb 2019 08:26:39: 19000000 INFO @ Fri, 15 Feb 2019 08:26:39: 21000000 INFO @ Fri, 15 Feb 2019 08:26:41: 21000000 INFO @ Fri, 15 Feb 2019 08:26:47: 22000000 INFO @ Fri, 15 Feb 2019 08:26:49: 20000000 INFO @ Fri, 15 Feb 2019 08:26:50: 22000000 INFO @ Fri, 15 Feb 2019 08:26:56: 23000000 INFO @ Fri, 15 Feb 2019 08:26:58: 23000000 INFO @ Fri, 15 Feb 2019 08:26:59: 21000000 INFO @ Fri, 15 Feb 2019 08:27:04: 24000000 INFO @ Fri, 15 Feb 2019 08:27:06: 24000000 INFO @ Fri, 15 Feb 2019 08:27:08: 22000000 INFO @ Fri, 15 Feb 2019 08:27:13: 25000000 INFO @ Fri, 15 Feb 2019 08:27:15: 25000000 INFO @ Fri, 15 Feb 2019 08:27:17: 23000000 INFO @ Fri, 15 Feb 2019 08:27:22: 26000000 INFO @ Fri, 15 Feb 2019 08:27:22: 26000000 INFO @ Fri, 15 Feb 2019 08:27:26: 24000000 INFO @ Fri, 15 Feb 2019 08:27:30: 27000000 INFO @ Fri, 15 Feb 2019 08:27:31: 27000000 INFO @ Fri, 15 Feb 2019 08:27:35: 25000000 INFO @ Fri, 15 Feb 2019 08:27:39: 28000000 INFO @ Fri, 15 Feb 2019 08:27:40: 28000000 INFO @ Fri, 15 Feb 2019 08:27:44: 26000000 INFO @ Fri, 15 Feb 2019 08:27:48: 29000000 INFO @ Fri, 15 Feb 2019 08:27:48: 29000000 INFO @ Fri, 15 Feb 2019 08:27:53: 27000000 INFO @ Fri, 15 Feb 2019 08:27:57: 30000000 INFO @ Fri, 15 Feb 2019 08:27:58: 30000000 INFO @ Fri, 15 Feb 2019 08:28:01: 28000000 INFO @ Fri, 15 Feb 2019 08:28:05: 31000000 INFO @ Fri, 15 Feb 2019 08:28:07: 31000000 INFO @ Fri, 15 Feb 2019 08:28:10: 29000000 INFO @ Fri, 15 Feb 2019 08:28:14: 32000000 INFO @ Fri, 15 Feb 2019 08:28:16: 32000000 INFO @ Fri, 15 Feb 2019 08:28:19: 30000000 INFO @ Fri, 15 Feb 2019 08:28:23: 33000000 INFO @ Fri, 15 Feb 2019 08:28:25: 33000000 INFO @ Fri, 15 Feb 2019 08:28:27: 31000000 INFO @ Fri, 15 Feb 2019 08:28:31: 34000000 INFO @ Fri, 15 Feb 2019 08:28:34: 34000000 INFO @ Fri, 15 Feb 2019 08:28:36: 32000000 INFO @ Fri, 15 Feb 2019 08:28:39: 35000000 INFO @ Fri, 15 Feb 2019 08:28:43: 35000000 INFO @ Fri, 15 Feb 2019 08:28:46: 36000000 INFO @ Fri, 15 Feb 2019 08:28:46: 33000000 INFO @ Fri, 15 Feb 2019 08:28:52: 36000000 INFO @ Fri, 15 Feb 2019 08:28:53: 37000000 INFO @ Fri, 15 Feb 2019 08:28:57: 34000000 INFO @ Fri, 15 Feb 2019 08:29:00: 38000000 INFO @ Fri, 15 Feb 2019 08:29:00: 37000000 INFO @ Fri, 15 Feb 2019 08:29:07: 35000000 INFO @ Fri, 15 Feb 2019 08:29:07: 39000000 INFO @ Fri, 15 Feb 2019 08:29:09: 38000000 INFO @ Fri, 15 Feb 2019 08:29:16: 40000000 INFO @ Fri, 15 Feb 2019 08:29:17: 36000000 INFO @ Fri, 15 Feb 2019 08:29:18: 39000000 INFO @ Fri, 15 Feb 2019 08:29:25: 41000000 INFO @ Fri, 15 Feb 2019 08:29:27: 40000000 INFO @ Fri, 15 Feb 2019 08:29:28: 37000000 INFO @ Fri, 15 Feb 2019 08:29:34: 42000000 INFO @ Fri, 15 Feb 2019 08:29:36: 41000000 INFO @ Fri, 15 Feb 2019 08:29:38: 38000000 INFO @ Fri, 15 Feb 2019 08:29:43: 43000000 INFO @ Fri, 15 Feb 2019 08:29:45: 42000000 INFO @ Fri, 15 Feb 2019 08:29:48: 39000000 INFO @ Fri, 15 Feb 2019 08:29:52: 44000000 INFO @ Fri, 15 Feb 2019 08:29:54: 43000000 INFO @ Fri, 15 Feb 2019 08:29:59: 40000000 INFO @ Fri, 15 Feb 2019 08:30:01: 45000000 INFO @ Fri, 15 Feb 2019 08:30:03: 44000000 INFO @ Fri, 15 Feb 2019 08:30:08: 41000000 INFO @ Fri, 15 Feb 2019 08:30:09: 46000000 INFO @ Fri, 15 Feb 2019 08:30:12: 45000000 INFO @ Fri, 15 Feb 2019 08:30:17: 42000000 INFO @ Fri, 15 Feb 2019 08:30:17: 47000000 INFO @ Fri, 15 Feb 2019 08:30:21: 46000000 INFO @ Fri, 15 Feb 2019 08:30:24: 43000000 INFO @ Fri, 15 Feb 2019 08:30:26: 48000000 INFO @ Fri, 15 Feb 2019 08:30:30: 47000000 INFO @ Fri, 15 Feb 2019 08:30:31: 44000000 INFO @ Fri, 15 Feb 2019 08:30:33: 49000000 INFO @ Fri, 15 Feb 2019 08:30:37: 48000000 INFO @ Fri, 15 Feb 2019 08:30:39: 45000000 INFO @ Fri, 15 Feb 2019 08:30:41: 50000000 INFO @ Fri, 15 Feb 2019 08:30:46: 49000000 INFO @ Fri, 15 Feb 2019 08:30:46: 46000000 INFO @ Fri, 15 Feb 2019 08:30:49: 51000000 INFO @ Fri, 15 Feb 2019 08:30:53: 47000000 INFO @ Fri, 15 Feb 2019 08:30:54: 50000000 INFO @ Fri, 15 Feb 2019 08:30:57: 52000000 INFO @ Fri, 15 Feb 2019 08:31:00: 48000000 INFO @ Fri, 15 Feb 2019 08:31:02: 51000000 INFO @ Fri, 15 Feb 2019 08:31:04: 53000000 INFO @ Fri, 15 Feb 2019 08:31:08: 49000000 INFO @ Fri, 15 Feb 2019 08:31:10: 52000000 INFO @ Fri, 15 Feb 2019 08:31:12: 54000000 INFO @ Fri, 15 Feb 2019 08:31:15: 50000000 INFO @ Fri, 15 Feb 2019 08:31:18: 53000000 INFO @ Fri, 15 Feb 2019 08:31:20: 55000000 INFO @ Fri, 15 Feb 2019 08:31:22: 51000000 INFO @ Fri, 15 Feb 2019 08:31:26: 54000000 INFO @ Fri, 15 Feb 2019 08:31:28: 56000000 INFO @ Fri, 15 Feb 2019 08:31:30: 52000000 INFO @ Fri, 15 Feb 2019 08:31:34: 55000000 INFO @ Fri, 15 Feb 2019 08:31:36: 57000000 INFO @ Fri, 15 Feb 2019 08:31:37: 53000000 INFO @ Fri, 15 Feb 2019 08:31:42: 56000000 INFO @ Fri, 15 Feb 2019 08:31:43: 58000000 INFO @ Fri, 15 Feb 2019 08:31:44: 54000000 INFO @ Fri, 15 Feb 2019 08:31:50: 57000000 INFO @ Fri, 15 Feb 2019 08:31:51: 59000000 INFO @ Fri, 15 Feb 2019 08:31:51: 55000000 INFO @ Fri, 15 Feb 2019 08:31:59: 58000000 INFO @ Fri, 15 Feb 2019 08:31:59: 56000000 INFO @ Fri, 15 Feb 2019 08:31:59: 60000000 INFO @ Fri, 15 Feb 2019 08:32:07: 57000000 INFO @ Fri, 15 Feb 2019 08:32:07: 61000000 INFO @ Fri, 15 Feb 2019 08:32:07: 59000000 INFO @ Fri, 15 Feb 2019 08:32:15: 62000000 INFO @ Fri, 15 Feb 2019 08:32:15: 60000000 INFO @ Fri, 15 Feb 2019 08:32:16: 58000000 INFO @ Fri, 15 Feb 2019 08:32:23: 63000000 INFO @ Fri, 15 Feb 2019 08:32:23: 61000000 INFO @ Fri, 15 Feb 2019 08:32:24: 59000000 INFO @ Fri, 15 Feb 2019 08:32:30: 64000000 INFO @ Fri, 15 Feb 2019 08:32:31: 62000000 INFO @ Fri, 15 Feb 2019 08:32:32: 60000000 INFO @ Fri, 15 Feb 2019 08:32:38: 65000000 INFO @ Fri, 15 Feb 2019 08:32:39: 63000000 INFO @ Fri, 15 Feb 2019 08:32:41: 61000000 INFO @ Fri, 15 Feb 2019 08:32:46: 66000000 INFO @ Fri, 15 Feb 2019 08:32:47: 64000000 INFO @ Fri, 15 Feb 2019 08:32:50: 62000000 INFO @ Fri, 15 Feb 2019 08:32:54: 67000000 INFO @ Fri, 15 Feb 2019 08:32:54: 65000000 INFO @ Fri, 15 Feb 2019 08:32:58: 63000000 INFO @ Fri, 15 Feb 2019 08:33:02: 68000000 INFO @ Fri, 15 Feb 2019 08:33:02: 66000000 INFO @ Fri, 15 Feb 2019 08:33:07: 64000000 INFO @ Fri, 15 Feb 2019 08:33:09: 69000000 INFO @ Fri, 15 Feb 2019 08:33:10: 67000000 INFO @ Fri, 15 Feb 2019 08:33:15: 65000000 INFO @ Fri, 15 Feb 2019 08:33:17: 70000000 INFO @ Fri, 15 Feb 2019 08:33:18: 68000000 INFO @ Fri, 15 Feb 2019 08:33:24: 66000000 INFO @ Fri, 15 Feb 2019 08:33:25: 71000000 INFO @ Fri, 15 Feb 2019 08:33:26: 69000000 INFO @ Fri, 15 Feb 2019 08:33:32: 72000000 INFO @ Fri, 15 Feb 2019 08:33:33: 67000000 INFO @ Fri, 15 Feb 2019 08:33:35: 70000000 INFO @ Fri, 15 Feb 2019 08:33:40: 73000000 INFO @ Fri, 15 Feb 2019 08:33:42: 68000000 INFO @ Fri, 15 Feb 2019 08:33:43: 71000000 INFO @ Fri, 15 Feb 2019 08:33:48: 74000000 INFO @ Fri, 15 Feb 2019 08:33:51: 72000000 INFO @ Fri, 15 Feb 2019 08:33:51: 69000000 INFO @ Fri, 15 Feb 2019 08:33:55: 75000000 INFO @ Fri, 15 Feb 2019 08:33:59: 73000000 INFO @ Fri, 15 Feb 2019 08:34:00: 70000000 INFO @ Fri, 15 Feb 2019 08:34:02: 76000000 INFO @ Fri, 15 Feb 2019 08:34:06: 74000000 INFO @ Fri, 15 Feb 2019 08:34:08: 71000000 INFO @ Fri, 15 Feb 2019 08:34:10: 77000000 INFO @ Fri, 15 Feb 2019 08:34:14: 75000000 INFO @ Fri, 15 Feb 2019 08:34:16: 72000000 INFO @ Fri, 15 Feb 2019 08:34:18: 78000000 INFO @ Fri, 15 Feb 2019 08:34:22: 76000000 INFO @ Fri, 15 Feb 2019 08:34:24: 73000000 INFO @ Fri, 15 Feb 2019 08:34:26: 79000000 INFO @ Fri, 15 Feb 2019 08:34:29: 77000000 INFO @ Fri, 15 Feb 2019 08:34:33: 74000000 INFO @ Fri, 15 Feb 2019 08:34:33: 80000000 INFO @ Fri, 15 Feb 2019 08:34:37: 78000000 INFO @ Fri, 15 Feb 2019 08:34:40: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 08:34:40: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 08:34:40: #1 total tags in treatment: 80893935 INFO @ Fri, 15 Feb 2019 08:34:40: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 08:34:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 08:34:41: 75000000 INFO @ Fri, 15 Feb 2019 08:34:42: #1 tags after filtering in treatment: 80893908 INFO @ Fri, 15 Feb 2019 08:34:42: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 08:34:42: #1 finished! INFO @ Fri, 15 Feb 2019 08:34:42: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 08:34:42: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 08:34:45: 79000000 INFO @ Fri, 15 Feb 2019 08:34:49: #2 number of paired peaks: 6824 INFO @ Fri, 15 Feb 2019 08:34:49: start model_add_line... INFO @ Fri, 15 Feb 2019 08:34:49: 76000000 INFO @ Fri, 15 Feb 2019 08:34:50: start X-correlation... INFO @ Fri, 15 Feb 2019 08:34:50: end of X-cor INFO @ Fri, 15 Feb 2019 08:34:50: #2 finished! INFO @ Fri, 15 Feb 2019 08:34:50: #2 predicted fragment length is 52 bps INFO @ Fri, 15 Feb 2019 08:34:50: #2 alternative fragment length(s) may be 52 bps INFO @ Fri, 15 Feb 2019 08:34:50: #2.2 Generate R script for model : SRX3360096.10_model.r WARNING @ Fri, 15 Feb 2019 08:34:50: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 08:34:50: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Fri, 15 Feb 2019 08:34:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 08:34:50: #3 Call peaks... INFO @ Fri, 15 Feb 2019 08:34:50: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 08:34:52: 80000000 INFO @ Fri, 15 Feb 2019 08:34:57: 77000000 INFO @ Fri, 15 Feb 2019 08:35:00: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 08:35:00: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 08:35:00: #1 total tags in treatment: 80893935 INFO @ Fri, 15 Feb 2019 08:35:00: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 08:35:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 08:35:02: #1 tags after filtering in treatment: 80893908 INFO @ Fri, 15 Feb 2019 08:35:02: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 08:35:02: #1 finished! INFO @ Fri, 15 Feb 2019 08:35:02: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 08:35:02: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 08:35:04: 78000000 INFO @ Fri, 15 Feb 2019 08:35:08: #2 number of paired peaks: 6824 INFO @ Fri, 15 Feb 2019 08:35:08: start model_add_line... INFO @ Fri, 15 Feb 2019 08:35:09: start X-correlation... INFO @ Fri, 15 Feb 2019 08:35:09: end of X-cor INFO @ Fri, 15 Feb 2019 08:35:09: #2 finished! INFO @ Fri, 15 Feb 2019 08:35:09: #2 predicted fragment length is 52 bps INFO @ Fri, 15 Feb 2019 08:35:09: #2 alternative fragment length(s) may be 52 bps INFO @ Fri, 15 Feb 2019 08:35:09: #2.2 Generate R script for model : SRX3360096.05_model.r WARNING @ Fri, 15 Feb 2019 08:35:09: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 08:35:09: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Fri, 15 Feb 2019 08:35:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 08:35:09: #3 Call peaks... INFO @ Fri, 15 Feb 2019 08:35:09: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 08:35:11: 79000000 INFO @ Fri, 15 Feb 2019 08:35:18: 80000000 INFO @ Fri, 15 Feb 2019 08:35:26: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 08:35:26: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 08:35:26: #1 total tags in treatment: 80893935 INFO @ Fri, 15 Feb 2019 08:35:26: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 08:35:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 08:35:28: #1 tags after filtering in treatment: 80893908 INFO @ Fri, 15 Feb 2019 08:35:28: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 08:35:28: #1 finished! INFO @ Fri, 15 Feb 2019 08:35:28: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 08:35:28: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 08:35:34: #2 number of paired peaks: 6824 INFO @ Fri, 15 Feb 2019 08:35:34: start model_add_line... INFO @ Fri, 15 Feb 2019 08:35:35: start X-correlation... INFO @ Fri, 15 Feb 2019 08:35:35: end of X-cor INFO @ Fri, 15 Feb 2019 08:35:35: #2 finished! INFO @ Fri, 15 Feb 2019 08:35:35: #2 predicted fragment length is 52 bps INFO @ Fri, 15 Feb 2019 08:35:35: #2 alternative fragment length(s) may be 52 bps INFO @ Fri, 15 Feb 2019 08:35:35: #2.2 Generate R script for model : SRX3360096.20_model.r WARNING @ Fri, 15 Feb 2019 08:35:35: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 08:35:35: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Fri, 15 Feb 2019 08:35:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 08:35:35: #3 Call peaks... INFO @ Fri, 15 Feb 2019 08:35:35: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 08:38:05: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 08:38:18: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 08:38:35: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 08:40:04: #4 Write output xls file... SRX3360096.10_peaks.xls INFO @ Fri, 15 Feb 2019 08:40:04: #4 Write peak in narrowPeak format file... SRX3360096.10_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 08:40:04: #4 Write summits bed file... SRX3360096.10_summits.bed INFO @ Fri, 15 Feb 2019 08:40:05: Done! pass1 - making usageList (56 chroms): 4 millis pass2 - checking and writing primary data (1862 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 08:40:12: #4 Write output xls file... SRX3360096.05_peaks.xls INFO @ Fri, 15 Feb 2019 08:40:12: #4 Write peak in narrowPeak format file... SRX3360096.05_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 08:40:12: #4 Write summits bed file... SRX3360096.05_summits.bed INFO @ Fri, 15 Feb 2019 08:40:12: Done! pass1 - making usageList (69 chroms): 3 millis pass2 - checking and writing primary data (3627 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 08:40:27: #4 Write output xls file... SRX3360096.20_peaks.xls INFO @ Fri, 15 Feb 2019 08:40:27: #4 Write peak in narrowPeak format file... SRX3360096.20_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 08:40:27: #4 Write summits bed file... SRX3360096.20_summits.bed INFO @ Fri, 15 Feb 2019 08:40:27: Done! pass1 - making usageList (43 chroms): 2 millis pass2 - checking and writing primary data (797 records, 4 fields): 6 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。