Job ID = 2003646 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 74,968,131 reads read : 74,968,131 reads written : 74,968,131 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:36:08 74968131 reads; of these: 74968131 (100.00%) were unpaired; of these: 3388166 (4.52%) aligned 0 times 46013648 (61.38%) aligned exactly 1 time 25566317 (34.10%) aligned >1 times 95.48% overall alignment rate Time searching: 00:36:09 Overall time: 00:36:09 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 20 files... [bam_rmdupse_core] 8369317 / 71579965 = 0.1169 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 14:30:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 14:30:15: #1 read tag files... INFO @ Fri, 05 Jul 2019 14:30:15: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 14:30:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 14:30:15: #1 read tag files... INFO @ Fri, 05 Jul 2019 14:30:15: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 14:30:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 14:30:16: #1 read tag files... INFO @ Fri, 05 Jul 2019 14:30:16: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 14:30:22: 1000000 INFO @ Fri, 05 Jul 2019 14:30:24: 1000000 INFO @ Fri, 05 Jul 2019 14:30:24: 1000000 INFO @ Fri, 05 Jul 2019 14:30:29: 2000000 INFO @ Fri, 05 Jul 2019 14:30:31: 2000000 INFO @ Fri, 05 Jul 2019 14:30:32: 2000000 INFO @ Fri, 05 Jul 2019 14:30:35: 3000000 INFO @ Fri, 05 Jul 2019 14:30:38: 3000000 INFO @ Fri, 05 Jul 2019 14:30:40: 3000000 INFO @ Fri, 05 Jul 2019 14:30:41: 4000000 INFO @ Fri, 05 Jul 2019 14:30:45: 4000000 INFO @ Fri, 05 Jul 2019 14:30:48: 4000000 INFO @ Fri, 05 Jul 2019 14:30:48: 5000000 INFO @ Fri, 05 Jul 2019 14:30:52: 5000000 INFO @ Fri, 05 Jul 2019 14:30:55: 6000000 INFO @ Fri, 05 Jul 2019 14:30:55: 5000000 INFO @ Fri, 05 Jul 2019 14:30:59: 6000000 INFO @ Fri, 05 Jul 2019 14:31:01: 7000000 INFO @ Fri, 05 Jul 2019 14:31:03: 6000000 INFO @ Fri, 05 Jul 2019 14:31:06: 7000000 INFO @ Fri, 05 Jul 2019 14:31:08: 8000000 INFO @ Fri, 05 Jul 2019 14:31:11: 7000000 INFO @ Fri, 05 Jul 2019 14:31:13: 8000000 INFO @ Fri, 05 Jul 2019 14:31:14: 9000000 INFO @ Fri, 05 Jul 2019 14:31:19: 8000000 INFO @ Fri, 05 Jul 2019 14:31:20: 9000000 INFO @ Fri, 05 Jul 2019 14:31:20: 10000000 INFO @ Fri, 05 Jul 2019 14:31:26: 9000000 INFO @ Fri, 05 Jul 2019 14:31:26: 10000000 INFO @ Fri, 05 Jul 2019 14:31:27: 11000000 INFO @ Fri, 05 Jul 2019 14:31:33: 12000000 INFO @ Fri, 05 Jul 2019 14:31:33: 11000000 INFO @ Fri, 05 Jul 2019 14:31:34: 10000000 INFO @ Fri, 05 Jul 2019 14:31:40: 13000000 INFO @ Fri, 05 Jul 2019 14:31:40: 12000000 INFO @ Fri, 05 Jul 2019 14:31:42: 11000000 INFO @ Fri, 05 Jul 2019 14:31:46: 14000000 INFO @ Fri, 05 Jul 2019 14:31:47: 13000000 INFO @ Fri, 05 Jul 2019 14:31:50: 12000000 INFO @ Fri, 05 Jul 2019 14:31:52: 15000000 INFO @ Fri, 05 Jul 2019 14:31:54: 14000000 INFO @ Fri, 05 Jul 2019 14:31:57: 13000000 INFO @ Fri, 05 Jul 2019 14:31:59: 16000000 INFO @ Fri, 05 Jul 2019 14:32:01: 15000000 INFO @ Fri, 05 Jul 2019 14:32:05: 14000000 INFO @ Fri, 05 Jul 2019 14:32:05: 17000000 INFO @ Fri, 05 Jul 2019 14:32:08: 16000000 INFO @ Fri, 05 Jul 2019 14:32:12: 18000000 INFO @ Fri, 05 Jul 2019 14:32:13: 15000000 INFO @ Fri, 05 Jul 2019 14:32:15: 17000000 INFO @ Fri, 05 Jul 2019 14:32:18: 19000000 INFO @ Fri, 05 Jul 2019 14:32:20: 16000000 INFO @ Fri, 05 Jul 2019 14:32:22: 18000000 INFO @ Fri, 05 Jul 2019 14:32:25: 20000000 INFO @ Fri, 05 Jul 2019 14:32:28: 17000000 INFO @ Fri, 05 Jul 2019 14:32:29: 19000000 INFO @ Fri, 05 Jul 2019 14:32:31: 21000000 INFO @ Fri, 05 Jul 2019 14:32:35: 20000000 INFO @ Fri, 05 Jul 2019 14:32:36: 18000000 INFO @ Fri, 05 Jul 2019 14:32:37: 22000000 INFO @ Fri, 05 Jul 2019 14:32:42: 21000000 INFO @ Fri, 05 Jul 2019 14:32:43: 19000000 INFO @ Fri, 05 Jul 2019 14:32:44: 23000000 INFO @ Fri, 05 Jul 2019 14:32:49: 22000000 INFO @ Fri, 05 Jul 2019 14:32:50: 24000000 INFO @ Fri, 05 Jul 2019 14:32:51: 20000000 INFO @ Fri, 05 Jul 2019 14:32:56: 23000000 INFO @ Fri, 05 Jul 2019 14:32:56: 25000000 INFO @ Fri, 05 Jul 2019 14:32:59: 21000000 INFO @ Fri, 05 Jul 2019 14:33:03: 26000000 INFO @ Fri, 05 Jul 2019 14:33:03: 24000000 INFO @ Fri, 05 Jul 2019 14:33:06: 22000000 INFO @ Fri, 05 Jul 2019 14:33:09: 27000000 INFO @ Fri, 05 Jul 2019 14:33:10: 25000000 INFO @ Fri, 05 Jul 2019 14:33:14: 23000000 INFO @ Fri, 05 Jul 2019 14:33:15: 28000000 INFO @ Fri, 05 Jul 2019 14:33:17: 26000000 INFO @ Fri, 05 Jul 2019 14:33:21: 24000000 INFO @ Fri, 05 Jul 2019 14:33:22: 29000000 INFO @ Fri, 05 Jul 2019 14:33:23: 27000000 INFO @ Fri, 05 Jul 2019 14:33:28: 30000000 INFO @ Fri, 05 Jul 2019 14:33:29: 25000000 INFO @ Fri, 05 Jul 2019 14:33:30: 28000000 INFO @ Fri, 05 Jul 2019 14:33:34: 31000000 INFO @ Fri, 05 Jul 2019 14:33:37: 26000000 INFO @ Fri, 05 Jul 2019 14:33:37: 29000000 INFO @ Fri, 05 Jul 2019 14:33:41: 32000000 INFO @ Fri, 05 Jul 2019 14:33:44: 30000000 INFO @ Fri, 05 Jul 2019 14:33:44: 27000000 INFO @ Fri, 05 Jul 2019 14:33:47: 33000000 INFO @ Fri, 05 Jul 2019 14:33:51: 31000000 INFO @ Fri, 05 Jul 2019 14:33:52: 28000000 INFO @ Fri, 05 Jul 2019 14:33:54: 34000000 INFO @ Fri, 05 Jul 2019 14:33:57: 32000000 INFO @ Fri, 05 Jul 2019 14:34:00: 29000000 INFO @ Fri, 05 Jul 2019 14:34:00: 35000000 INFO @ Fri, 05 Jul 2019 14:34:04: 33000000 INFO @ Fri, 05 Jul 2019 14:34:06: 36000000 INFO @ Fri, 05 Jul 2019 14:34:07: 30000000 INFO @ Fri, 05 Jul 2019 14:34:11: 34000000 INFO @ Fri, 05 Jul 2019 14:34:13: 37000000 INFO @ Fri, 05 Jul 2019 14:34:15: 31000000 INFO @ Fri, 05 Jul 2019 14:34:18: 35000000 INFO @ Fri, 05 Jul 2019 14:34:19: 38000000 INFO @ Fri, 05 Jul 2019 14:34:22: 32000000 INFO @ Fri, 05 Jul 2019 14:34:25: 36000000 INFO @ Fri, 05 Jul 2019 14:34:25: 39000000 INFO @ Fri, 05 Jul 2019 14:34:30: 33000000 INFO @ Fri, 05 Jul 2019 14:34:31: 37000000 INFO @ Fri, 05 Jul 2019 14:34:32: 40000000 INFO @ Fri, 05 Jul 2019 14:34:38: 34000000 INFO @ Fri, 05 Jul 2019 14:34:38: 41000000 INFO @ Fri, 05 Jul 2019 14:34:38: 38000000 INFO @ Fri, 05 Jul 2019 14:34:44: 42000000 INFO @ Fri, 05 Jul 2019 14:34:45: 39000000 INFO @ Fri, 05 Jul 2019 14:34:45: 35000000 INFO @ Fri, 05 Jul 2019 14:34:51: 43000000 INFO @ Fri, 05 Jul 2019 14:34:52: 40000000 INFO @ Fri, 05 Jul 2019 14:34:53: 36000000 INFO @ Fri, 05 Jul 2019 14:34:57: 44000000 INFO @ Fri, 05 Jul 2019 14:34:59: 41000000 INFO @ Fri, 05 Jul 2019 14:35:00: 37000000 INFO @ Fri, 05 Jul 2019 14:35:03: 45000000 INFO @ Fri, 05 Jul 2019 14:35:06: 42000000 INFO @ Fri, 05 Jul 2019 14:35:08: 38000000 INFO @ Fri, 05 Jul 2019 14:35:10: 46000000 INFO @ Fri, 05 Jul 2019 14:35:12: 43000000 INFO @ Fri, 05 Jul 2019 14:35:16: 39000000 INFO @ Fri, 05 Jul 2019 14:35:16: 47000000 INFO @ Fri, 05 Jul 2019 14:35:19: 44000000 INFO @ Fri, 05 Jul 2019 14:35:23: 48000000 INFO @ Fri, 05 Jul 2019 14:35:23: 40000000 INFO @ Fri, 05 Jul 2019 14:35:26: 45000000 INFO @ Fri, 05 Jul 2019 14:35:29: 49000000 INFO @ Fri, 05 Jul 2019 14:35:31: 41000000 INFO @ Fri, 05 Jul 2019 14:35:33: 46000000 INFO @ Fri, 05 Jul 2019 14:35:36: 50000000 INFO @ Fri, 05 Jul 2019 14:35:38: 42000000 INFO @ Fri, 05 Jul 2019 14:35:40: 47000000 INFO @ Fri, 05 Jul 2019 14:35:42: 51000000 INFO @ Fri, 05 Jul 2019 14:35:46: 43000000 INFO @ Fri, 05 Jul 2019 14:35:47: 48000000 INFO @ Fri, 05 Jul 2019 14:35:49: 52000000 INFO @ Fri, 05 Jul 2019 14:35:54: 44000000 INFO @ Fri, 05 Jul 2019 14:35:54: 49000000 INFO @ Fri, 05 Jul 2019 14:35:57: 53000000 INFO @ Fri, 05 Jul 2019 14:36:01: 50000000 INFO @ Fri, 05 Jul 2019 14:36:01: 45000000 INFO @ Fri, 05 Jul 2019 14:36:05: 54000000 INFO @ Fri, 05 Jul 2019 14:36:08: 51000000 INFO @ Fri, 05 Jul 2019 14:36:10: 46000000 INFO @ Fri, 05 Jul 2019 14:36:13: 55000000 INFO @ Fri, 05 Jul 2019 14:36:15: 52000000 INFO @ Fri, 05 Jul 2019 14:36:18: 47000000 INFO @ Fri, 05 Jul 2019 14:36:21: 56000000 INFO @ Fri, 05 Jul 2019 14:36:22: 53000000 INFO @ Fri, 05 Jul 2019 14:36:26: 48000000 INFO @ Fri, 05 Jul 2019 14:36:29: 57000000 INFO @ Fri, 05 Jul 2019 14:36:29: 54000000 INFO @ Fri, 05 Jul 2019 14:36:34: 49000000 INFO @ Fri, 05 Jul 2019 14:36:36: 55000000 INFO @ Fri, 05 Jul 2019 14:36:37: 58000000 INFO @ Fri, 05 Jul 2019 14:36:43: 50000000 INFO @ Fri, 05 Jul 2019 14:36:43: 56000000 INFO @ Fri, 05 Jul 2019 14:36:46: 59000000 INFO @ Fri, 05 Jul 2019 14:36:51: 57000000 INFO @ Fri, 05 Jul 2019 14:36:51: 51000000 INFO @ Fri, 05 Jul 2019 14:36:54: 60000000 INFO @ Fri, 05 Jul 2019 14:36:58: 58000000 INFO @ Fri, 05 Jul 2019 14:36:59: 52000000 INFO @ Fri, 05 Jul 2019 14:37:02: 61000000 INFO @ Fri, 05 Jul 2019 14:37:05: 59000000 INFO @ Fri, 05 Jul 2019 14:37:07: 53000000 INFO @ Fri, 05 Jul 2019 14:37:10: 62000000 INFO @ Fri, 05 Jul 2019 14:37:12: 60000000 INFO @ Fri, 05 Jul 2019 14:37:15: 54000000 INFO @ Fri, 05 Jul 2019 14:37:18: 63000000 INFO @ Fri, 05 Jul 2019 14:37:19: 61000000 INFO @ Fri, 05 Jul 2019 14:37:21: #1 tag size is determined as 40 bps INFO @ Fri, 05 Jul 2019 14:37:21: #1 tag size = 40 INFO @ Fri, 05 Jul 2019 14:37:21: #1 total tags in treatment: 63210648 INFO @ Fri, 05 Jul 2019 14:37:21: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 14:37:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 14:37:22: #1 tags after filtering in treatment: 63210620 INFO @ Fri, 05 Jul 2019 14:37:22: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 14:37:22: #1 finished! INFO @ Fri, 05 Jul 2019 14:37:22: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 14:37:22: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 14:37:23: 55000000 INFO @ Fri, 05 Jul 2019 14:37:26: 62000000 INFO @ Fri, 05 Jul 2019 14:37:29: #2 number of paired peaks: 6824 INFO @ Fri, 05 Jul 2019 14:37:29: start model_add_line... INFO @ Fri, 05 Jul 2019 14:37:29: start X-correlation... INFO @ Fri, 05 Jul 2019 14:37:30: end of X-cor INFO @ Fri, 05 Jul 2019 14:37:30: #2 finished! INFO @ Fri, 05 Jul 2019 14:37:30: #2 predicted fragment length is 40 bps INFO @ Fri, 05 Jul 2019 14:37:30: #2 alternative fragment length(s) may be 40 bps INFO @ Fri, 05 Jul 2019 14:37:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.10_model.r WARNING @ Fri, 05 Jul 2019 14:37:30: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 14:37:30: #2 You may need to consider one of the other alternative d(s): 40 WARNING @ Fri, 05 Jul 2019 14:37:30: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 14:37:30: #3 Call peaks... INFO @ Fri, 05 Jul 2019 14:37:30: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 14:37:31: 56000000 INFO @ Fri, 05 Jul 2019 14:37:33: 63000000 INFO @ Fri, 05 Jul 2019 14:37:35: #1 tag size is determined as 40 bps INFO @ Fri, 05 Jul 2019 14:37:35: #1 tag size = 40 INFO @ Fri, 05 Jul 2019 14:37:35: #1 total tags in treatment: 63210648 INFO @ Fri, 05 Jul 2019 14:37:35: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 14:37:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 14:37:37: #1 tags after filtering in treatment: 63210620 INFO @ Fri, 05 Jul 2019 14:37:37: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 14:37:37: #1 finished! INFO @ Fri, 05 Jul 2019 14:37:37: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 14:37:37: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 14:37:38: 57000000 INFO @ Fri, 05 Jul 2019 14:37:44: #2 number of paired peaks: 6824 INFO @ Fri, 05 Jul 2019 14:37:44: start model_add_line... INFO @ Fri, 05 Jul 2019 14:37:44: start X-correlation... INFO @ Fri, 05 Jul 2019 14:37:44: end of X-cor INFO @ Fri, 05 Jul 2019 14:37:44: #2 finished! INFO @ Fri, 05 Jul 2019 14:37:44: #2 predicted fragment length is 40 bps INFO @ Fri, 05 Jul 2019 14:37:44: #2 alternative fragment length(s) may be 40 bps INFO @ Fri, 05 Jul 2019 14:37:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.20_model.r WARNING @ Fri, 05 Jul 2019 14:37:44: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 14:37:44: #2 You may need to consider one of the other alternative d(s): 40 WARNING @ Fri, 05 Jul 2019 14:37:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 14:37:44: #3 Call peaks... INFO @ Fri, 05 Jul 2019 14:37:44: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 14:37:46: 58000000 INFO @ Fri, 05 Jul 2019 14:37:54: 59000000 INFO @ Fri, 05 Jul 2019 14:38:02: 60000000 INFO @ Fri, 05 Jul 2019 14:38:09: 61000000 INFO @ Fri, 05 Jul 2019 14:38:17: 62000000 INFO @ Fri, 05 Jul 2019 14:38:24: 63000000 INFO @ Fri, 05 Jul 2019 14:38:27: #1 tag size is determined as 40 bps INFO @ Fri, 05 Jul 2019 14:38:27: #1 tag size = 40 INFO @ Fri, 05 Jul 2019 14:38:27: #1 total tags in treatment: 63210648 INFO @ Fri, 05 Jul 2019 14:38:27: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 14:38:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 14:38:28: #1 tags after filtering in treatment: 63210620 INFO @ Fri, 05 Jul 2019 14:38:28: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 14:38:28: #1 finished! INFO @ Fri, 05 Jul 2019 14:38:28: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 14:38:28: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 14:38:35: #2 number of paired peaks: 6824 INFO @ Fri, 05 Jul 2019 14:38:35: start model_add_line... INFO @ Fri, 05 Jul 2019 14:38:36: start X-correlation... INFO @ Fri, 05 Jul 2019 14:38:36: end of X-cor INFO @ Fri, 05 Jul 2019 14:38:36: #2 finished! INFO @ Fri, 05 Jul 2019 14:38:36: #2 predicted fragment length is 40 bps INFO @ Fri, 05 Jul 2019 14:38:36: #2 alternative fragment length(s) may be 40 bps INFO @ Fri, 05 Jul 2019 14:38:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.05_model.r WARNING @ Fri, 05 Jul 2019 14:38:36: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 14:38:36: #2 You may need to consider one of the other alternative d(s): 40 WARNING @ Fri, 05 Jul 2019 14:38:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 14:38:36: #3 Call peaks... INFO @ Fri, 05 Jul 2019 14:38:36: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 14:40:39: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 14:40:52: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 14:41:45: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 14:42:16: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.10_peaks.xls INFO @ Fri, 05 Jul 2019 14:42:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 14:42:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.10_summits.bed INFO @ Fri, 05 Jul 2019 14:42:16: Done! pass1 - making usageList (62 chroms): 2 millis pass2 - checking and writing primary data (1981 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 14:42:29: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.20_peaks.xls INFO @ Fri, 05 Jul 2019 14:42:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 14:42:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.20_summits.bed INFO @ Fri, 05 Jul 2019 14:42:29: Done! pass1 - making usageList (48 chroms): 2 millis pass2 - checking and writing primary data (914 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 14:43:23: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.05_peaks.xls INFO @ Fri, 05 Jul 2019 14:43:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 14:43:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX330076/SRX330076.05_summits.bed INFO @ Fri, 05 Jul 2019 14:43:23: Done! pass1 - making usageList (85 chroms): 3 millis pass2 - checking and writing primary data (3789 records, 4 fields): 18 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。