Job ID = 10194739 sra ファイルのダウンロード中... Completed: 1845359K bytes transferred in 18 seconds (809163K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 89611057 spots for /home/okishinya/chipatlas/results/rn6/SRX1068228/SRR2073187.sra Written 89611057 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:11:15 89611057 reads; of these: 89611057 (100.00%) were unpaired; of these: 2014377 (2.25%) aligned 0 times 63268732 (70.60%) aligned exactly 1 time 24327948 (27.15%) aligned >1 times 97.75% overall alignment rate Time searching: 01:11:18 Overall time: 01:11:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 10384045 / 87596680 = 0.1185 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 11 Nov 2017 00:44:35: # Command line: callpeak -t SRX1068228.bam -f BAM -g 2.15e9 -n SRX1068228.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1068228.10 # format = BAM # ChIP-seq file = ['SRX1068228.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:44:35: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:44:35: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:44:35: # Command line: callpeak -t SRX1068228.bam -f BAM -g 2.15e9 -n SRX1068228.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1068228.05 # format = BAM # ChIP-seq file = ['SRX1068228.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:44:35: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:44:35: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:44:35: # Command line: callpeak -t SRX1068228.bam -f BAM -g 2.15e9 -n SRX1068228.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1068228.20 # format = BAM # ChIP-seq file = ['SRX1068228.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:44:35: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:44:35: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:44:43: 1000000 INFO @ Sat, 11 Nov 2017 00:44:43: 1000000 INFO @ Sat, 11 Nov 2017 00:44:43: 1000000 INFO @ Sat, 11 Nov 2017 00:44:50: 2000000 INFO @ Sat, 11 Nov 2017 00:44:50: 2000000 INFO @ Sat, 11 Nov 2017 00:44:50: 2000000 INFO @ Sat, 11 Nov 2017 00:44:57: 3000000 INFO @ Sat, 11 Nov 2017 00:44:57: 3000000 INFO @ Sat, 11 Nov 2017 00:44:58: 3000000 INFO @ Sat, 11 Nov 2017 00:45:04: 4000000 INFO @ Sat, 11 Nov 2017 00:45:05: 4000000 INFO @ Sat, 11 Nov 2017 00:45:06: 4000000 INFO @ Sat, 11 Nov 2017 00:45:11: 5000000 INFO @ Sat, 11 Nov 2017 00:45:12: 5000000 INFO @ Sat, 11 Nov 2017 00:45:13: 5000000 INFO @ Sat, 11 Nov 2017 00:45:18: 6000000 INFO @ Sat, 11 Nov 2017 00:45:20: 6000000 INFO @ Sat, 11 Nov 2017 00:45:21: 6000000 INFO @ Sat, 11 Nov 2017 00:45:25: 7000000 INFO @ Sat, 11 Nov 2017 00:45:27: 7000000 INFO @ Sat, 11 Nov 2017 00:45:29: 7000000 INFO @ Sat, 11 Nov 2017 00:45:32: 8000000 INFO @ Sat, 11 Nov 2017 00:45:35: 8000000 INFO @ Sat, 11 Nov 2017 00:45:37: 8000000 INFO @ Sat, 11 Nov 2017 00:45:39: 9000000 INFO @ Sat, 11 Nov 2017 00:45:43: 9000000 INFO @ Sat, 11 Nov 2017 00:45:45: 9000000 INFO @ Sat, 11 Nov 2017 00:45:45: 10000000 INFO @ Sat, 11 Nov 2017 00:45:50: 10000000 INFO @ Sat, 11 Nov 2017 00:45:52: 10000000 INFO @ Sat, 11 Nov 2017 00:45:52: 11000000 INFO @ Sat, 11 Nov 2017 00:45:58: 11000000 INFO @ Sat, 11 Nov 2017 00:45:59: 12000000 INFO @ Sat, 11 Nov 2017 00:46:00: 11000000 INFO @ Sat, 11 Nov 2017 00:46:05: 12000000 INFO @ Sat, 11 Nov 2017 00:46:06: 13000000 INFO @ Sat, 11 Nov 2017 00:46:08: 12000000 INFO @ Sat, 11 Nov 2017 00:46:13: 13000000 INFO @ Sat, 11 Nov 2017 00:46:13: 14000000 INFO @ Sat, 11 Nov 2017 00:46:16: 13000000 INFO @ Sat, 11 Nov 2017 00:46:20: 14000000 INFO @ Sat, 11 Nov 2017 00:46:20: 15000000 INFO @ Sat, 11 Nov 2017 00:46:24: 14000000 INFO @ Sat, 11 Nov 2017 00:46:27: 16000000 INFO @ Sat, 11 Nov 2017 00:46:28: 15000000 INFO @ Sat, 11 Nov 2017 00:46:31: 15000000 INFO @ Sat, 11 Nov 2017 00:46:34: 17000000 INFO @ Sat, 11 Nov 2017 00:46:35: 16000000 INFO @ Sat, 11 Nov 2017 00:46:39: 16000000 INFO @ Sat, 11 Nov 2017 00:46:41: 18000000 INFO @ Sat, 11 Nov 2017 00:46:43: 17000000 INFO @ Sat, 11 Nov 2017 00:46:47: 17000000 INFO @ Sat, 11 Nov 2017 00:46:48: 19000000 INFO @ Sat, 11 Nov 2017 00:46:50: 18000000 INFO @ Sat, 11 Nov 2017 00:46:55: 18000000 INFO @ Sat, 11 Nov 2017 00:46:55: 20000000 INFO @ Sat, 11 Nov 2017 00:46:58: 19000000 INFO @ Sat, 11 Nov 2017 00:47:02: 21000000 INFO @ Sat, 11 Nov 2017 00:47:03: 19000000 INFO @ Sat, 11 Nov 2017 00:47:05: 20000000 INFO @ Sat, 11 Nov 2017 00:47:10: 22000000 INFO @ Sat, 11 Nov 2017 00:47:10: 20000000 INFO @ Sat, 11 Nov 2017 00:47:12: 21000000 INFO @ Sat, 11 Nov 2017 00:47:17: 23000000 INFO @ Sat, 11 Nov 2017 00:47:17: 21000000 INFO @ Sat, 11 Nov 2017 00:47:20: 22000000 INFO @ Sat, 11 Nov 2017 00:47:24: 24000000 INFO @ Sat, 11 Nov 2017 00:47:25: 22000000 INFO @ Sat, 11 Nov 2017 00:47:27: 23000000 INFO @ Sat, 11 Nov 2017 00:47:31: 25000000 INFO @ Sat, 11 Nov 2017 00:47:32: 23000000 INFO @ Sat, 11 Nov 2017 00:47:34: 24000000 INFO @ Sat, 11 Nov 2017 00:47:38: 26000000 INFO @ Sat, 11 Nov 2017 00:47:40: 24000000 INFO @ Sat, 11 Nov 2017 00:47:41: 25000000 INFO @ Sat, 11 Nov 2017 00:47:46: 27000000 INFO @ Sat, 11 Nov 2017 00:47:47: 25000000 INFO @ Sat, 11 Nov 2017 00:47:48: 26000000 INFO @ Sat, 11 Nov 2017 00:47:53: 28000000 INFO @ Sat, 11 Nov 2017 00:47:55: 27000000 INFO @ Sat, 11 Nov 2017 00:47:55: 26000000 INFO @ Sat, 11 Nov 2017 00:48:00: 29000000 INFO @ Sat, 11 Nov 2017 00:48:02: 28000000 INFO @ Sat, 11 Nov 2017 00:48:03: 27000000 INFO @ Sat, 11 Nov 2017 00:48:08: 30000000 INFO @ Sat, 11 Nov 2017 00:48:09: 29000000 INFO @ Sat, 11 Nov 2017 00:48:10: 28000000 INFO @ Sat, 11 Nov 2017 00:48:15: 31000000 INFO @ Sat, 11 Nov 2017 00:48:16: 30000000 INFO @ Sat, 11 Nov 2017 00:48:18: 29000000 INFO @ Sat, 11 Nov 2017 00:48:22: 32000000 INFO @ Sat, 11 Nov 2017 00:48:23: 31000000 INFO @ Sat, 11 Nov 2017 00:48:26: 30000000 INFO @ Sat, 11 Nov 2017 00:48:30: 33000000 INFO @ Sat, 11 Nov 2017 00:48:30: 32000000 INFO @ Sat, 11 Nov 2017 00:48:33: 31000000 INFO @ Sat, 11 Nov 2017 00:48:37: 34000000 INFO @ Sat, 11 Nov 2017 00:48:37: 33000000 INFO @ Sat, 11 Nov 2017 00:48:41: 32000000 INFO @ Sat, 11 Nov 2017 00:48:44: 35000000 INFO @ Sat, 11 Nov 2017 00:48:44: 34000000 INFO @ Sat, 11 Nov 2017 00:48:48: 33000000 INFO @ Sat, 11 Nov 2017 00:48:51: 36000000 INFO @ Sat, 11 Nov 2017 00:48:52: 35000000 INFO @ Sat, 11 Nov 2017 00:48:56: 34000000 INFO @ Sat, 11 Nov 2017 00:48:58: 37000000 INFO @ Sat, 11 Nov 2017 00:48:59: 36000000 INFO @ Sat, 11 Nov 2017 00:49:04: 35000000 INFO @ Sat, 11 Nov 2017 00:49:05: 38000000 INFO @ Sat, 11 Nov 2017 00:49:07: 37000000 INFO @ Sat, 11 Nov 2017 00:49:12: 36000000 INFO @ Sat, 11 Nov 2017 00:49:12: 39000000 INFO @ Sat, 11 Nov 2017 00:49:15: 38000000 INFO @ Sat, 11 Nov 2017 00:49:19: 40000000 INFO @ Sat, 11 Nov 2017 00:49:20: 37000000 INFO @ Sat, 11 Nov 2017 00:49:23: 39000000 INFO @ Sat, 11 Nov 2017 00:49:26: 41000000 INFO @ Sat, 11 Nov 2017 00:49:28: 38000000 INFO @ Sat, 11 Nov 2017 00:49:30: 40000000 INFO @ Sat, 11 Nov 2017 00:49:33: 42000000 INFO @ Sat, 11 Nov 2017 00:49:35: 39000000 INFO @ Sat, 11 Nov 2017 00:49:37: 41000000 INFO @ Sat, 11 Nov 2017 00:49:40: 43000000 INFO @ Sat, 11 Nov 2017 00:49:43: 40000000 INFO @ Sat, 11 Nov 2017 00:49:44: 42000000 INFO @ Sat, 11 Nov 2017 00:49:47: 44000000 INFO @ Sat, 11 Nov 2017 00:49:51: 41000000 INFO @ Sat, 11 Nov 2017 00:49:52: 43000000 INFO @ Sat, 11 Nov 2017 00:49:54: 45000000 INFO @ Sat, 11 Nov 2017 00:49:59: 42000000 INFO @ Sat, 11 Nov 2017 00:50:00: 44000000 INFO @ Sat, 11 Nov 2017 00:50:01: 46000000 INFO @ Sat, 11 Nov 2017 00:50:06: 43000000 INFO @ Sat, 11 Nov 2017 00:50:07: 45000000 INFO @ Sat, 11 Nov 2017 00:50:08: 47000000 INFO @ Sat, 11 Nov 2017 00:50:14: 44000000 INFO @ Sat, 11 Nov 2017 00:50:15: 46000000 INFO @ Sat, 11 Nov 2017 00:50:15: 48000000 INFO @ Sat, 11 Nov 2017 00:50:22: 45000000 INFO @ Sat, 11 Nov 2017 00:50:22: 49000000 INFO @ Sat, 11 Nov 2017 00:50:22: 47000000 INFO @ Sat, 11 Nov 2017 00:50:29: 50000000 INFO @ Sat, 11 Nov 2017 00:50:30: 48000000 INFO @ Sat, 11 Nov 2017 00:50:30: 46000000 INFO @ Sat, 11 Nov 2017 00:50:37: 51000000 INFO @ Sat, 11 Nov 2017 00:50:37: 49000000 INFO @ Sat, 11 Nov 2017 00:50:38: 47000000 INFO @ Sat, 11 Nov 2017 00:50:44: 52000000 INFO @ Sat, 11 Nov 2017 00:50:45: 50000000 INFO @ Sat, 11 Nov 2017 00:50:46: 48000000 INFO @ Sat, 11 Nov 2017 00:50:51: 53000000 INFO @ Sat, 11 Nov 2017 00:50:53: 51000000 INFO @ Sat, 11 Nov 2017 00:50:53: 49000000 INFO @ Sat, 11 Nov 2017 00:50:57: 54000000 INFO @ Sat, 11 Nov 2017 00:51:00: 52000000 INFO @ Sat, 11 Nov 2017 00:51:01: 50000000 INFO @ Sat, 11 Nov 2017 00:51:07: 55000000 INFO @ Sat, 11 Nov 2017 00:51:09: 53000000 INFO @ Sat, 11 Nov 2017 00:51:10: 51000000 INFO @ Sat, 11 Nov 2017 00:51:16: 56000000 INFO @ Sat, 11 Nov 2017 00:51:17: 54000000 INFO @ Sat, 11 Nov 2017 00:51:19: 52000000 INFO @ Sat, 11 Nov 2017 00:51:25: 55000000 INFO @ Sat, 11 Nov 2017 00:51:26: 57000000 INFO @ Sat, 11 Nov 2017 00:51:27: 53000000 INFO @ Sat, 11 Nov 2017 00:51:34: 56000000 INFO @ Sat, 11 Nov 2017 00:51:35: 58000000 INFO @ Sat, 11 Nov 2017 00:51:36: 54000000 INFO @ Sat, 11 Nov 2017 00:51:42: 57000000 INFO @ Sat, 11 Nov 2017 00:51:45: 55000000 INFO @ Sat, 11 Nov 2017 00:51:45: 59000000 INFO @ Sat, 11 Nov 2017 00:51:50: 58000000 INFO @ Sat, 11 Nov 2017 00:51:53: 56000000 INFO @ Sat, 11 Nov 2017 00:51:54: 60000000 INFO @ Sat, 11 Nov 2017 00:51:58: 59000000 INFO @ Sat, 11 Nov 2017 00:52:02: 57000000 INFO @ Sat, 11 Nov 2017 00:52:03: 61000000 INFO @ Sat, 11 Nov 2017 00:52:06: 60000000 INFO @ Sat, 11 Nov 2017 00:52:10: 58000000 INFO @ Sat, 11 Nov 2017 00:52:11: 62000000 INFO @ Sat, 11 Nov 2017 00:52:13: 61000000 INFO @ Sat, 11 Nov 2017 00:52:17: 59000000 INFO @ Sat, 11 Nov 2017 00:52:18: 63000000 INFO @ Sat, 11 Nov 2017 00:52:20: 62000000 INFO @ Sat, 11 Nov 2017 00:52:25: 60000000 INFO @ Sat, 11 Nov 2017 00:52:25: 64000000 INFO @ Sat, 11 Nov 2017 00:52:27: 63000000 INFO @ Sat, 11 Nov 2017 00:52:32: 65000000 INFO @ Sat, 11 Nov 2017 00:52:32: 61000000 INFO @ Sat, 11 Nov 2017 00:52:35: 64000000 INFO @ Sat, 11 Nov 2017 00:52:39: 66000000 INFO @ Sat, 11 Nov 2017 00:52:40: 62000000 INFO @ Sat, 11 Nov 2017 00:52:42: 65000000 INFO @ Sat, 11 Nov 2017 00:52:46: 67000000 INFO @ Sat, 11 Nov 2017 00:52:47: 63000000 INFO @ Sat, 11 Nov 2017 00:52:50: 66000000 INFO @ Sat, 11 Nov 2017 00:52:53: 68000000 INFO @ Sat, 11 Nov 2017 00:52:55: 64000000 INFO @ Sat, 11 Nov 2017 00:52:57: 67000000 INFO @ Sat, 11 Nov 2017 00:53:00: 69000000 INFO @ Sat, 11 Nov 2017 00:53:02: 65000000 INFO @ Sat, 11 Nov 2017 00:53:05: 68000000 INFO @ Sat, 11 Nov 2017 00:53:08: 70000000 INFO @ Sat, 11 Nov 2017 00:53:09: 66000000 INFO @ Sat, 11 Nov 2017 00:53:12: 69000000 INFO @ Sat, 11 Nov 2017 00:53:15: 71000000 INFO @ Sat, 11 Nov 2017 00:53:17: 67000000 INFO @ Sat, 11 Nov 2017 00:53:19: 70000000 INFO @ Sat, 11 Nov 2017 00:53:22: 72000000 INFO @ Sat, 11 Nov 2017 00:53:24: 68000000 INFO @ Sat, 11 Nov 2017 00:53:27: 71000000 INFO @ Sat, 11 Nov 2017 00:53:29: 73000000 INFO @ Sat, 11 Nov 2017 00:53:31: 69000000 INFO @ Sat, 11 Nov 2017 00:53:34: 72000000 INFO @ Sat, 11 Nov 2017 00:53:37: 74000000 INFO @ Sat, 11 Nov 2017 00:53:38: 70000000 INFO @ Sat, 11 Nov 2017 00:53:42: 73000000 INFO @ Sat, 11 Nov 2017 00:53:45: 75000000 INFO @ Sat, 11 Nov 2017 00:53:46: 71000000 INFO @ Sat, 11 Nov 2017 00:53:50: 74000000 INFO @ Sat, 11 Nov 2017 00:53:52: 76000000 INFO @ Sat, 11 Nov 2017 00:53:54: 72000000 INFO @ Sat, 11 Nov 2017 00:53:57: 75000000 INFO @ Sat, 11 Nov 2017 00:54:00: 77000000 INFO @ Sat, 11 Nov 2017 00:54:01: 73000000 INFO @ Sat, 11 Nov 2017 00:54:02: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:54:02: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:54:02: #1 total tags in treatment: 77212635 INFO @ Sat, 11 Nov 2017 00:54:02: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:54:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:54:04: #1 tags after filtering in treatment: 77212599 INFO @ Sat, 11 Nov 2017 00:54:04: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:54:04: #1 finished! INFO @ Sat, 11 Nov 2017 00:54:04: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:54:04: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:54:04: 76000000 INFO @ Sat, 11 Nov 2017 00:54:09: 74000000 INFO @ Sat, 11 Nov 2017 00:54:10: #2 number of paired peaks: 8394 INFO @ Sat, 11 Nov 2017 00:54:10: start model_add_line... INFO @ Sat, 11 Nov 2017 00:54:11: start X-correlation... INFO @ Sat, 11 Nov 2017 00:54:11: end of X-cor INFO @ Sat, 11 Nov 2017 00:54:11: #2 finished! INFO @ Sat, 11 Nov 2017 00:54:11: #2 predicted fragment length is 130 bps INFO @ Sat, 11 Nov 2017 00:54:11: #2 alternative fragment length(s) may be 130,595 bps INFO @ Sat, 11 Nov 2017 00:54:11: #2.2 Generate R script for model : SRX1068228.10_model.r INFO @ Sat, 11 Nov 2017 00:54:11: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:54:11: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:54:11: 77000000 INFO @ Sat, 11 Nov 2017 00:54:13: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:54:13: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:54:13: #1 total tags in treatment: 77212635 INFO @ Sat, 11 Nov 2017 00:54:13: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:54:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:54:15: #1 tags after filtering in treatment: 77212599 INFO @ Sat, 11 Nov 2017 00:54:15: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:54:15: #1 finished! INFO @ Sat, 11 Nov 2017 00:54:15: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:54:15: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:54:16: 75000000 INFO @ Sat, 11 Nov 2017 00:54:22: #2 number of paired peaks: 8394 INFO @ Sat, 11 Nov 2017 00:54:22: start model_add_line... INFO @ Sat, 11 Nov 2017 00:54:23: start X-correlation... INFO @ Sat, 11 Nov 2017 00:54:23: end of X-cor INFO @ Sat, 11 Nov 2017 00:54:23: #2 finished! INFO @ Sat, 11 Nov 2017 00:54:23: #2 predicted fragment length is 130 bps INFO @ Sat, 11 Nov 2017 00:54:23: #2 alternative fragment length(s) may be 130,595 bps INFO @ Sat, 11 Nov 2017 00:54:23: #2.2 Generate R script for model : SRX1068228.20_model.r INFO @ Sat, 11 Nov 2017 00:54:23: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:54:23: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:54:23: 76000000 INFO @ Sat, 11 Nov 2017 00:54:30: 77000000 INFO @ Sat, 11 Nov 2017 00:54:32: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:54:32: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:54:32: #1 total tags in treatment: 77212635 INFO @ Sat, 11 Nov 2017 00:54:32: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:54:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:54:34: #1 tags after filtering in treatment: 77212599 INFO @ Sat, 11 Nov 2017 00:54:34: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:54:34: #1 finished! INFO @ Sat, 11 Nov 2017 00:54:34: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:54:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:54:40: #2 number of paired peaks: 8394 INFO @ Sat, 11 Nov 2017 00:54:40: start model_add_line... INFO @ Sat, 11 Nov 2017 00:54:41: start X-correlation... INFO @ Sat, 11 Nov 2017 00:54:41: end of X-cor INFO @ Sat, 11 Nov 2017 00:54:41: #2 finished! INFO @ Sat, 11 Nov 2017 00:54:41: #2 predicted fragment length is 130 bps INFO @ Sat, 11 Nov 2017 00:54:41: #2 alternative fragment length(s) may be 130,595 bps INFO @ Sat, 11 Nov 2017 00:54:41: #2.2 Generate R script for model : SRX1068228.05_model.r INFO @ Sat, 11 Nov 2017 00:54:41: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:54:41: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:57:25: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:57:28: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:57:45: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:59:16: #4 Write output xls file... SRX1068228.10_peaks.xls INFO @ Sat, 11 Nov 2017 00:59:16: #4 Write peak in narrowPeak format file... SRX1068228.10_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 00:59:16: #4 Write summits bed file... SRX1068228.10_summits.bed INFO @ Sat, 11 Nov 2017 00:59:16: Done! pass1 - making usageList (54 chroms): 2 millis pass2 - checking and writing primary data (5315 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 00:59:18: #4 Write output xls file... SRX1068228.20_peaks.xls INFO @ Sat, 11 Nov 2017 00:59:18: #4 Write peak in narrowPeak format file... SRX1068228.20_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 00:59:18: #4 Write summits bed file... SRX1068228.20_summits.bed INFO @ Sat, 11 Nov 2017 00:59:18: Done! pass1 - making usageList (42 chroms): 1 millis pass2 - checking and writing primary data (2326 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 00:59:37: #4 Write output xls file... SRX1068228.05_peaks.xls INFO @ Sat, 11 Nov 2017 00:59:37: #4 Write peak in narrowPeak format file... SRX1068228.05_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 00:59:37: #4 Write summits bed file... SRX1068228.05_summits.bed INFO @ Sat, 11 Nov 2017 00:59:37: Done! pass1 - making usageList (78 chroms): 3 millis pass2 - checking and writing primary data (9827 records, 4 fields): 15 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。