Job ID = 10194735 sra ファイルのダウンロード中... Completed: 2685491K bytes transferred in 34 seconds (645536K bits/sec), in 1 file. Completed: 2075327K bytes transferred in 28 seconds (590351K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 33882866 spots for /home/okishinya/chipatlas/results/rn6/SRX1056331/SRR2060204.sra Written 33882866 spots total Written 45111082 spots for /home/okishinya/chipatlas/results/rn6/SRX1056331/SRR2060203.sra Written 45111082 spots total rm: cannot remove `[DSE]RX*': No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 05:23:53 78993948 reads; of these: 78993948 (100.00%) were unpaired; of these: 3815874 (4.83%) aligned 0 times 55974956 (70.86%) aligned exactly 1 time 19203118 (24.31%) aligned >1 times 95.17% overall alignment rate Time searching: 05:23:57 Overall time: 05:23:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 6893163 / 75178074 = 0.0917 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 11 Nov 2017 02:08:34: # Command line: callpeak -t SRX1056331.bam -f BAM -g 2.15e9 -n SRX1056331.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1056331.10 # format = BAM # ChIP-seq file = ['SRX1056331.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 02:08:34: #1 read tag files... INFO @ Sat, 11 Nov 2017 02:08:34: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 02:08:34: # Command line: callpeak -t SRX1056331.bam -f BAM -g 2.15e9 -n SRX1056331.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1056331.05 # format = BAM # ChIP-seq file = ['SRX1056331.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 02:08:34: #1 read tag files... INFO @ Sat, 11 Nov 2017 02:08:34: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 02:08:34: # Command line: callpeak -t SRX1056331.bam -f BAM -g 2.15e9 -n SRX1056331.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1056331.20 # format = BAM # ChIP-seq file = ['SRX1056331.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 02:08:34: #1 read tag files... INFO @ Sat, 11 Nov 2017 02:08:34: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 02:08:46: 1000000 INFO @ Sat, 11 Nov 2017 02:08:46: 1000000 INFO @ Sat, 11 Nov 2017 02:08:46: 1000000 INFO @ Sat, 11 Nov 2017 02:08:56: 2000000 INFO @ Sat, 11 Nov 2017 02:08:58: 2000000 INFO @ Sat, 11 Nov 2017 02:08:59: 2000000 INFO @ Sat, 11 Nov 2017 02:09:08: 3000000 INFO @ Sat, 11 Nov 2017 02:09:10: 3000000 INFO @ Sat, 11 Nov 2017 02:09:11: 3000000 INFO @ Sat, 11 Nov 2017 02:09:18: 4000000 INFO @ Sat, 11 Nov 2017 02:09:20: 4000000 INFO @ Sat, 11 Nov 2017 02:09:20: 4000000 INFO @ Sat, 11 Nov 2017 02:09:27: 5000000 INFO @ Sat, 11 Nov 2017 02:09:29: 5000000 INFO @ Sat, 11 Nov 2017 02:09:30: 5000000 INFO @ Sat, 11 Nov 2017 02:09:37: 6000000 INFO @ Sat, 11 Nov 2017 02:09:39: 6000000 INFO @ Sat, 11 Nov 2017 02:09:40: 6000000 INFO @ Sat, 11 Nov 2017 02:09:46: 7000000 INFO @ Sat, 11 Nov 2017 02:09:50: 7000000 INFO @ Sat, 11 Nov 2017 02:09:50: 7000000 INFO @ Sat, 11 Nov 2017 02:09:55: 8000000 INFO @ Sat, 11 Nov 2017 02:09:59: 8000000 INFO @ Sat, 11 Nov 2017 02:10:00: 8000000 INFO @ Sat, 11 Nov 2017 02:10:05: 9000000 INFO @ Sat, 11 Nov 2017 02:10:09: 9000000 INFO @ Sat, 11 Nov 2017 02:10:09: 9000000 INFO @ Sat, 11 Nov 2017 02:10:14: 10000000 INFO @ Sat, 11 Nov 2017 02:10:19: 10000000 INFO @ Sat, 11 Nov 2017 02:10:20: 10000000 INFO @ Sat, 11 Nov 2017 02:10:24: 11000000 INFO @ Sat, 11 Nov 2017 02:10:29: 11000000 INFO @ Sat, 11 Nov 2017 02:10:30: 11000000 INFO @ Sat, 11 Nov 2017 02:10:34: 12000000 INFO @ Sat, 11 Nov 2017 02:10:38: 12000000 INFO @ Sat, 11 Nov 2017 02:10:39: 12000000 INFO @ Sat, 11 Nov 2017 02:10:43: 13000000 INFO @ Sat, 11 Nov 2017 02:10:48: 13000000 INFO @ Sat, 11 Nov 2017 02:10:48: 13000000 INFO @ Sat, 11 Nov 2017 02:10:53: 14000000 INFO @ Sat, 11 Nov 2017 02:10:58: 14000000 INFO @ Sat, 11 Nov 2017 02:10:58: 14000000 INFO @ Sat, 11 Nov 2017 02:11:02: 15000000 INFO @ Sat, 11 Nov 2017 02:11:08: 15000000 INFO @ Sat, 11 Nov 2017 02:11:09: 15000000 INFO @ Sat, 11 Nov 2017 02:11:15: 16000000 INFO @ Sat, 11 Nov 2017 02:11:17: 16000000 INFO @ Sat, 11 Nov 2017 02:11:20: 16000000 INFO @ Sat, 11 Nov 2017 02:11:26: 17000000 INFO @ Sat, 11 Nov 2017 02:11:29: 17000000 INFO @ Sat, 11 Nov 2017 02:11:32: 17000000 INFO @ Sat, 11 Nov 2017 02:11:35: 18000000 INFO @ Sat, 11 Nov 2017 02:11:40: 18000000 INFO @ Sat, 11 Nov 2017 02:11:44: 18000000 INFO @ Sat, 11 Nov 2017 02:11:47: 19000000 INFO @ Sat, 11 Nov 2017 02:11:50: 19000000 INFO @ Sat, 11 Nov 2017 02:11:56: 19000000 INFO @ Sat, 11 Nov 2017 02:11:59: 20000000 INFO @ Sat, 11 Nov 2017 02:11:59: 20000000 INFO @ Sat, 11 Nov 2017 02:12:08: 20000000 INFO @ Sat, 11 Nov 2017 02:12:08: 21000000 INFO @ Sat, 11 Nov 2017 02:12:11: 21000000 INFO @ Sat, 11 Nov 2017 02:12:17: 22000000 INFO @ Sat, 11 Nov 2017 02:12:20: 21000000 INFO @ Sat, 11 Nov 2017 02:12:23: 22000000 INFO @ Sat, 11 Nov 2017 02:12:26: 23000000 INFO @ Sat, 11 Nov 2017 02:12:31: 22000000 INFO @ Sat, 11 Nov 2017 02:12:35: 24000000 INFO @ Sat, 11 Nov 2017 02:12:35: 23000000 INFO @ Sat, 11 Nov 2017 02:12:43: 23000000 INFO @ Sat, 11 Nov 2017 02:12:44: 25000000 INFO @ Sat, 11 Nov 2017 02:12:47: 24000000 INFO @ Sat, 11 Nov 2017 02:12:53: 26000000 INFO @ Sat, 11 Nov 2017 02:12:54: 24000000 INFO @ Sat, 11 Nov 2017 02:13:00: 25000000 INFO @ Sat, 11 Nov 2017 02:13:03: 27000000 INFO @ Sat, 11 Nov 2017 02:13:07: 25000000 INFO @ Sat, 11 Nov 2017 02:13:12: 26000000 INFO @ Sat, 11 Nov 2017 02:13:13: 28000000 INFO @ Sat, 11 Nov 2017 02:13:19: 26000000 INFO @ Sat, 11 Nov 2017 02:13:25: 27000000 INFO @ Sat, 11 Nov 2017 02:13:26: 29000000 INFO @ Sat, 11 Nov 2017 02:13:31: 27000000 INFO @ Sat, 11 Nov 2017 02:13:38: 28000000 INFO @ Sat, 11 Nov 2017 02:13:40: 30000000 INFO @ Sat, 11 Nov 2017 02:13:43: 28000000 INFO @ Sat, 11 Nov 2017 02:13:52: 29000000 INFO @ Sat, 11 Nov 2017 02:13:53: 31000000 INFO @ Sat, 11 Nov 2017 02:13:57: 29000000 INFO @ Sat, 11 Nov 2017 02:14:07: 30000000 INFO @ Sat, 11 Nov 2017 02:14:08: 32000000 INFO @ Sat, 11 Nov 2017 02:14:12: 30000000 INFO @ Sat, 11 Nov 2017 02:14:21: 31000000 INFO @ Sat, 11 Nov 2017 02:14:22: 33000000 INFO @ Sat, 11 Nov 2017 02:14:26: 31000000 INFO @ Sat, 11 Nov 2017 02:14:34: 32000000 INFO @ Sat, 11 Nov 2017 02:14:36: 34000000 INFO @ Sat, 11 Nov 2017 02:14:39: 32000000 INFO @ Sat, 11 Nov 2017 02:14:48: 33000000 INFO @ Sat, 11 Nov 2017 02:14:50: 35000000 INFO @ Sat, 11 Nov 2017 02:14:53: 33000000 INFO @ Sat, 11 Nov 2017 02:15:03: 34000000 INFO @ Sat, 11 Nov 2017 02:15:04: 36000000 INFO @ Sat, 11 Nov 2017 02:15:08: 34000000 INFO @ Sat, 11 Nov 2017 02:15:16: 35000000 INFO @ Sat, 11 Nov 2017 02:15:17: 37000000 INFO @ Sat, 11 Nov 2017 02:15:20: 35000000 INFO @ Sat, 11 Nov 2017 02:15:26: 36000000 INFO @ Sat, 11 Nov 2017 02:15:28: 38000000 INFO @ Sat, 11 Nov 2017 02:15:31: 36000000 INFO @ Sat, 11 Nov 2017 02:15:36: 37000000 INFO @ Sat, 11 Nov 2017 02:15:40: 39000000 INFO @ Sat, 11 Nov 2017 02:15:44: 37000000 INFO @ Sat, 11 Nov 2017 02:15:46: 38000000 INFO @ Sat, 11 Nov 2017 02:15:53: 40000000 INFO @ Sat, 11 Nov 2017 02:15:54: 38000000 INFO @ Sat, 11 Nov 2017 02:15:55: 39000000 INFO @ Sat, 11 Nov 2017 02:16:05: 40000000 INFO @ Sat, 11 Nov 2017 02:16:06: 39000000 INFO @ Sat, 11 Nov 2017 02:16:06: 41000000 INFO @ Sat, 11 Nov 2017 02:16:14: 41000000 INFO @ Sat, 11 Nov 2017 02:16:16: 40000000 INFO @ Sat, 11 Nov 2017 02:16:20: 42000000 INFO @ Sat, 11 Nov 2017 02:16:24: 42000000 INFO @ Sat, 11 Nov 2017 02:16:27: 41000000 INFO @ Sat, 11 Nov 2017 02:16:33: 43000000 INFO @ Sat, 11 Nov 2017 02:16:33: 43000000 INFO @ Sat, 11 Nov 2017 02:16:38: 42000000 INFO @ Sat, 11 Nov 2017 02:16:43: 44000000 INFO @ Sat, 11 Nov 2017 02:16:47: 44000000 INFO @ Sat, 11 Nov 2017 02:16:50: 43000000 INFO @ Sat, 11 Nov 2017 02:16:53: 45000000 INFO @ Sat, 11 Nov 2017 02:17:00: 45000000 INFO @ Sat, 11 Nov 2017 02:17:01: 44000000 INFO @ Sat, 11 Nov 2017 02:17:02: 46000000 INFO @ Sat, 11 Nov 2017 02:17:12: 47000000 INFO @ Sat, 11 Nov 2017 02:17:12: 46000000 INFO @ Sat, 11 Nov 2017 02:17:13: 45000000 INFO @ Sat, 11 Nov 2017 02:17:21: 48000000 INFO @ Sat, 11 Nov 2017 02:17:23: 46000000 INFO @ Sat, 11 Nov 2017 02:17:24: 47000000 INFO @ Sat, 11 Nov 2017 02:17:31: 49000000 INFO @ Sat, 11 Nov 2017 02:17:34: 47000000 INFO @ Sat, 11 Nov 2017 02:17:37: 48000000 INFO @ Sat, 11 Nov 2017 02:17:40: 50000000 INFO @ Sat, 11 Nov 2017 02:17:44: 48000000 INFO @ Sat, 11 Nov 2017 02:17:48: 49000000 INFO @ Sat, 11 Nov 2017 02:17:50: 51000000 INFO @ Sat, 11 Nov 2017 02:17:55: 49000000 INFO @ Sat, 11 Nov 2017 02:18:00: 52000000 INFO @ Sat, 11 Nov 2017 02:18:01: 50000000 INFO @ Sat, 11 Nov 2017 02:18:06: 50000000 INFO @ Sat, 11 Nov 2017 02:18:12: 53000000 INFO @ Sat, 11 Nov 2017 02:18:14: 51000000 INFO @ Sat, 11 Nov 2017 02:18:17: 51000000 INFO @ Sat, 11 Nov 2017 02:18:23: 54000000 INFO @ Sat, 11 Nov 2017 02:18:28: 52000000 INFO @ Sat, 11 Nov 2017 02:18:29: 52000000 INFO @ Sat, 11 Nov 2017 02:18:35: 55000000 INFO @ Sat, 11 Nov 2017 02:18:40: 53000000 INFO @ Sat, 11 Nov 2017 02:18:41: 53000000 INFO @ Sat, 11 Nov 2017 02:18:47: 56000000 INFO @ Sat, 11 Nov 2017 02:18:51: 54000000 INFO @ Sat, 11 Nov 2017 02:18:55: 54000000 INFO @ Sat, 11 Nov 2017 02:19:00: 57000000 INFO @ Sat, 11 Nov 2017 02:19:04: 55000000 INFO @ Sat, 11 Nov 2017 02:19:09: 55000000 INFO @ Sat, 11 Nov 2017 02:19:12: 58000000 INFO @ Sat, 11 Nov 2017 02:19:17: 56000000 INFO @ Sat, 11 Nov 2017 02:19:23: 56000000 INFO @ Sat, 11 Nov 2017 02:19:24: 59000000 INFO @ Sat, 11 Nov 2017 02:19:30: 57000000 INFO @ Sat, 11 Nov 2017 02:19:37: 57000000 INFO @ Sat, 11 Nov 2017 02:19:38: 60000000 INFO @ Sat, 11 Nov 2017 02:19:43: 58000000 INFO @ Sat, 11 Nov 2017 02:19:50: 61000000 INFO @ Sat, 11 Nov 2017 02:19:50: 58000000 INFO @ Sat, 11 Nov 2017 02:19:56: 59000000 INFO @ Sat, 11 Nov 2017 02:20:02: 62000000 INFO @ Sat, 11 Nov 2017 02:20:03: 59000000 INFO @ Sat, 11 Nov 2017 02:20:08: 60000000 INFO @ Sat, 11 Nov 2017 02:20:15: 63000000 INFO @ Sat, 11 Nov 2017 02:20:17: 60000000 INFO @ Sat, 11 Nov 2017 02:20:21: 61000000 INFO @ Sat, 11 Nov 2017 02:20:28: 64000000 INFO @ Sat, 11 Nov 2017 02:20:31: 61000000 INFO @ Sat, 11 Nov 2017 02:20:33: 62000000 INFO @ Sat, 11 Nov 2017 02:20:41: 65000000 INFO @ Sat, 11 Nov 2017 02:20:44: 63000000 INFO @ Sat, 11 Nov 2017 02:20:45: 62000000 INFO @ Sat, 11 Nov 2017 02:20:55: 66000000 INFO @ Sat, 11 Nov 2017 02:20:55: 64000000 INFO @ Sat, 11 Nov 2017 02:20:59: 63000000 INFO @ Sat, 11 Nov 2017 02:21:08: 67000000 INFO @ Sat, 11 Nov 2017 02:21:08: 65000000 INFO @ Sat, 11 Nov 2017 02:21:13: 64000000 INFO @ Sat, 11 Nov 2017 02:21:21: 68000000 INFO @ Sat, 11 Nov 2017 02:21:22: 66000000 INFO @ Sat, 11 Nov 2017 02:21:25: #1 tag size is determined as 100 bps INFO @ Sat, 11 Nov 2017 02:21:25: #1 tag size = 100 INFO @ Sat, 11 Nov 2017 02:21:25: #1 total tags in treatment: 68284911 INFO @ Sat, 11 Nov 2017 02:21:25: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 02:21:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 02:21:26: 65000000 INFO @ Sat, 11 Nov 2017 02:21:27: #1 tags after filtering in treatment: 68284869 INFO @ Sat, 11 Nov 2017 02:21:27: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 02:21:27: #1 finished! INFO @ Sat, 11 Nov 2017 02:21:27: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 02:21:27: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 02:21:33: 67000000 INFO @ Sat, 11 Nov 2017 02:21:34: #2 number of paired peaks: 5871 INFO @ Sat, 11 Nov 2017 02:21:34: start model_add_line... INFO @ Sat, 11 Nov 2017 02:21:35: start X-correlation... INFO @ Sat, 11 Nov 2017 02:21:35: end of X-cor INFO @ Sat, 11 Nov 2017 02:21:35: #2 finished! INFO @ Sat, 11 Nov 2017 02:21:35: #2 predicted fragment length is 105 bps INFO @ Sat, 11 Nov 2017 02:21:35: #2 alternative fragment length(s) may be 105 bps INFO @ Sat, 11 Nov 2017 02:21:35: #2.2 Generate R script for model : SRX1056331.10_model.r WARNING @ Sat, 11 Nov 2017 02:21:35: #2 Since the d (105) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 02:21:35: #2 You may need to consider one of the other alternative d(s): 105 WARNING @ Sat, 11 Nov 2017 02:21:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 02:21:35: #3 Call peaks... INFO @ Sat, 11 Nov 2017 02:21:35: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 02:21:37: 66000000 INFO @ Sat, 11 Nov 2017 02:21:43: 68000000 INFO @ Sat, 11 Nov 2017 02:21:47: 67000000 INFO @ Sat, 11 Nov 2017 02:21:47: #1 tag size is determined as 100 bps INFO @ Sat, 11 Nov 2017 02:21:47: #1 tag size = 100 INFO @ Sat, 11 Nov 2017 02:21:47: #1 total tags in treatment: 68284911 INFO @ Sat, 11 Nov 2017 02:21:47: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 02:21:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 02:21:50: #1 tags after filtering in treatment: 68284869 INFO @ Sat, 11 Nov 2017 02:21:50: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 02:21:50: #1 finished! INFO @ Sat, 11 Nov 2017 02:21:50: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 02:21:50: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 02:21:57: #2 number of paired peaks: 5871 INFO @ Sat, 11 Nov 2017 02:21:57: start model_add_line... INFO @ Sat, 11 Nov 2017 02:21:58: 68000000 INFO @ Sat, 11 Nov 2017 02:21:58: start X-correlation... INFO @ Sat, 11 Nov 2017 02:21:58: end of X-cor INFO @ Sat, 11 Nov 2017 02:21:58: #2 finished! INFO @ Sat, 11 Nov 2017 02:21:58: #2 predicted fragment length is 105 bps INFO @ Sat, 11 Nov 2017 02:21:58: #2 alternative fragment length(s) may be 105 bps INFO @ Sat, 11 Nov 2017 02:21:58: #2.2 Generate R script for model : SRX1056331.05_model.r WARNING @ Sat, 11 Nov 2017 02:21:58: #2 Since the d (105) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 02:21:58: #2 You may need to consider one of the other alternative d(s): 105 WARNING @ Sat, 11 Nov 2017 02:21:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 02:21:58: #3 Call peaks... INFO @ Sat, 11 Nov 2017 02:21:58: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 02:22:02: #1 tag size is determined as 100 bps INFO @ Sat, 11 Nov 2017 02:22:02: #1 tag size = 100 INFO @ Sat, 11 Nov 2017 02:22:02: #1 total tags in treatment: 68284911 INFO @ Sat, 11 Nov 2017 02:22:02: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 02:22:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 02:22:04: #1 tags after filtering in treatment: 68284869 INFO @ Sat, 11 Nov 2017 02:22:04: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 02:22:04: #1 finished! INFO @ Sat, 11 Nov 2017 02:22:04: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 02:22:04: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 02:22:11: #2 number of paired peaks: 5871 INFO @ Sat, 11 Nov 2017 02:22:11: start model_add_line... INFO @ Sat, 11 Nov 2017 02:22:12: start X-correlation... INFO @ Sat, 11 Nov 2017 02:22:12: end of X-cor INFO @ Sat, 11 Nov 2017 02:22:12: #2 finished! INFO @ Sat, 11 Nov 2017 02:22:12: #2 predicted fragment length is 105 bps INFO @ Sat, 11 Nov 2017 02:22:12: #2 alternative fragment length(s) may be 105 bps INFO @ Sat, 11 Nov 2017 02:22:12: #2.2 Generate R script for model : SRX1056331.20_model.r WARNING @ Sat, 11 Nov 2017 02:22:12: #2 Since the d (105) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 02:22:12: #2 You may need to consider one of the other alternative d(s): 105 WARNING @ Sat, 11 Nov 2017 02:22:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 02:22:12: #3 Call peaks... INFO @ Sat, 11 Nov 2017 02:22:12: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 02:24:57: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 02:25:06: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 02:25:25: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 02:26:58: #4 Write output xls file... SRX1056331.10_peaks.xls INFO @ Sat, 11 Nov 2017 02:26:58: #4 Write peak in narrowPeak format file... SRX1056331.10_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 02:26:58: #4 Write summits bed file... SRX1056331.10_summits.bed INFO @ Sat, 11 Nov 2017 02:26:58: Done! INFO @ Sat, 11 Nov 2017 02:26:58: #4 Write output xls file... SRX1056331.05_peaks.xls INFO @ Sat, 11 Nov 2017 02:26:58: #4 Write peak in narrowPeak format file... SRX1056331.05_peaks.narrowPeak pass1 - making usageList (77 chroms): 3 millis INFO @ Sat, 11 Nov 2017 02:26:58: #4 Write summits bed file... SRX1056331.05_summits.bed pass2 - checking and writing primary data (2677 records, 4 fields): 24 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 02:26:58: Done! pass1 - making usageList (108 chroms): 3 millis pass2 - checking and writing primary data (8301 records, 4 fields): 22 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 02:27:18: #4 Write output xls file... SRX1056331.20_peaks.xls INFO @ Sat, 11 Nov 2017 02:27:18: #4 Write peak in narrowPeak format file... SRX1056331.20_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 02:27:18: #4 Write summits bed file... SRX1056331.20_summits.bed INFO @ Sat, 11 Nov 2017 02:27:18: Done! pass1 - making usageList (49 chroms): 3 millis pass2 - checking and writing primary data (1054 records, 4 fields): 14 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。