Job ID = 10223659 SRX = ERX2745134 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T20:13:43 prefetch.2.10.7: 1) Downloading 'ERR2731909'... 2020-10-15T20:13:43 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T20:15:19 prefetch.2.10.7: HTTPS download succeed 2020-10-15T20:15:19 prefetch.2.10.7: 1) 'ERR2731909' was downloaded successfully Read 84399989 spots for ERR2731909/ERR2731909.sra Written 84399989 spots for ERR2731909/ERR2731909.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:04:39 84399989 reads; of these: 84399989 (100.00%) were unpaired; of these: 2572437 (3.05%) aligned 0 times 57533971 (68.17%) aligned exactly 1 time 24293581 (28.78%) aligned >1 times 96.95% overall alignment rate Time searching: 01:04:41 Overall time: 01:04:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 20810741 / 81827552 = 0.2543 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:37:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:37:35: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:37:35: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:37:41: 1000000 INFO @ Fri, 16 Oct 2020 06:37:46: 2000000 INFO @ Fri, 16 Oct 2020 06:37:52: 3000000 INFO @ Fri, 16 Oct 2020 06:37:57: 4000000 INFO @ Fri, 16 Oct 2020 06:38:02: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:38:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:38:05: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:38:05: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:38:08: 6000000 INFO @ Fri, 16 Oct 2020 06:38:11: 1000000 INFO @ Fri, 16 Oct 2020 06:38:13: 7000000 INFO @ Fri, 16 Oct 2020 06:38:17: 2000000 INFO @ Fri, 16 Oct 2020 06:38:19: 8000000 INFO @ Fri, 16 Oct 2020 06:38:23: 3000000 INFO @ Fri, 16 Oct 2020 06:38:24: 9000000 INFO @ Fri, 16 Oct 2020 06:38:28: 4000000 INFO @ Fri, 16 Oct 2020 06:38:29: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:38:34: 5000000 INFO @ Fri, 16 Oct 2020 06:38:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:38:35: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:38:35: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:38:35: 11000000 INFO @ Fri, 16 Oct 2020 06:38:40: 6000000 INFO @ Fri, 16 Oct 2020 06:38:40: 12000000 INFO @ Fri, 16 Oct 2020 06:38:41: 1000000 INFO @ Fri, 16 Oct 2020 06:38:45: 7000000 INFO @ Fri, 16 Oct 2020 06:38:46: 13000000 INFO @ Fri, 16 Oct 2020 06:38:47: 2000000 INFO @ Fri, 16 Oct 2020 06:38:50: 8000000 INFO @ Fri, 16 Oct 2020 06:38:51: 14000000 INFO @ Fri, 16 Oct 2020 06:38:53: 3000000 INFO @ Fri, 16 Oct 2020 06:38:56: 9000000 INFO @ Fri, 16 Oct 2020 06:38:56: 15000000 INFO @ Fri, 16 Oct 2020 06:38:58: 4000000 INFO @ Fri, 16 Oct 2020 06:39:01: 10000000 INFO @ Fri, 16 Oct 2020 06:39:02: 16000000 INFO @ Fri, 16 Oct 2020 06:39:04: 5000000 INFO @ Fri, 16 Oct 2020 06:39:07: 17000000 INFO @ Fri, 16 Oct 2020 06:39:07: 11000000 INFO @ Fri, 16 Oct 2020 06:39:10: 6000000 INFO @ Fri, 16 Oct 2020 06:39:12: 18000000 INFO @ Fri, 16 Oct 2020 06:39:12: 12000000 INFO @ Fri, 16 Oct 2020 06:39:15: 7000000 INFO @ Fri, 16 Oct 2020 06:39:17: 19000000 INFO @ Fri, 16 Oct 2020 06:39:17: 13000000 INFO @ Fri, 16 Oct 2020 06:39:20: 8000000 INFO @ Fri, 16 Oct 2020 06:39:22: 20000000 INFO @ Fri, 16 Oct 2020 06:39:23: 14000000 INFO @ Fri, 16 Oct 2020 06:39:26: 9000000 INFO @ Fri, 16 Oct 2020 06:39:28: 21000000 INFO @ Fri, 16 Oct 2020 06:39:28: 15000000 INFO @ Fri, 16 Oct 2020 06:39:31: 10000000 INFO @ Fri, 16 Oct 2020 06:39:33: 22000000 INFO @ Fri, 16 Oct 2020 06:39:33: 16000000 INFO @ Fri, 16 Oct 2020 06:39:37: 11000000 INFO @ Fri, 16 Oct 2020 06:39:38: 23000000 INFO @ Fri, 16 Oct 2020 06:39:38: 17000000 INFO @ Fri, 16 Oct 2020 06:39:42: 12000000 INFO @ Fri, 16 Oct 2020 06:39:43: 24000000 INFO @ Fri, 16 Oct 2020 06:39:44: 18000000 INFO @ Fri, 16 Oct 2020 06:39:47: 13000000 INFO @ Fri, 16 Oct 2020 06:39:49: 25000000 INFO @ Fri, 16 Oct 2020 06:39:49: 19000000 INFO @ Fri, 16 Oct 2020 06:39:53: 14000000 INFO @ Fri, 16 Oct 2020 06:39:54: 26000000 INFO @ Fri, 16 Oct 2020 06:39:54: 20000000 INFO @ Fri, 16 Oct 2020 06:39:58: 15000000 INFO @ Fri, 16 Oct 2020 06:39:59: 27000000 INFO @ Fri, 16 Oct 2020 06:39:59: 21000000 INFO @ Fri, 16 Oct 2020 06:40:03: 16000000 INFO @ Fri, 16 Oct 2020 06:40:04: 28000000 INFO @ Fri, 16 Oct 2020 06:40:05: 22000000 INFO @ Fri, 16 Oct 2020 06:40:08: 17000000 INFO @ Fri, 16 Oct 2020 06:40:10: 29000000 INFO @ Fri, 16 Oct 2020 06:40:10: 23000000 INFO @ Fri, 16 Oct 2020 06:40:14: 18000000 INFO @ Fri, 16 Oct 2020 06:40:15: 30000000 INFO @ Fri, 16 Oct 2020 06:40:15: 24000000 INFO @ Fri, 16 Oct 2020 06:40:19: 19000000 INFO @ Fri, 16 Oct 2020 06:40:20: 31000000 INFO @ Fri, 16 Oct 2020 06:40:20: 25000000 INFO @ Fri, 16 Oct 2020 06:40:24: 20000000 INFO @ Fri, 16 Oct 2020 06:40:25: 32000000 INFO @ Fri, 16 Oct 2020 06:40:25: 26000000 INFO @ Fri, 16 Oct 2020 06:40:29: 21000000 INFO @ Fri, 16 Oct 2020 06:40:30: 33000000 INFO @ Fri, 16 Oct 2020 06:40:31: 27000000 INFO @ Fri, 16 Oct 2020 06:40:34: 22000000 INFO @ Fri, 16 Oct 2020 06:40:36: 34000000 INFO @ Fri, 16 Oct 2020 06:40:36: 28000000 INFO @ Fri, 16 Oct 2020 06:40:40: 23000000 INFO @ Fri, 16 Oct 2020 06:40:41: 35000000 INFO @ Fri, 16 Oct 2020 06:40:41: 29000000 INFO @ Fri, 16 Oct 2020 06:40:45: 24000000 INFO @ Fri, 16 Oct 2020 06:40:46: 36000000 INFO @ Fri, 16 Oct 2020 06:40:46: 30000000 INFO @ Fri, 16 Oct 2020 06:40:50: 25000000 INFO @ Fri, 16 Oct 2020 06:40:51: 37000000 INFO @ Fri, 16 Oct 2020 06:40:51: 31000000 INFO @ Fri, 16 Oct 2020 06:40:55: 26000000 INFO @ Fri, 16 Oct 2020 06:40:57: 38000000 INFO @ Fri, 16 Oct 2020 06:40:57: 32000000 INFO @ Fri, 16 Oct 2020 06:41:01: 27000000 INFO @ Fri, 16 Oct 2020 06:41:02: 33000000 INFO @ Fri, 16 Oct 2020 06:41:02: 39000000 INFO @ Fri, 16 Oct 2020 06:41:06: 28000000 INFO @ Fri, 16 Oct 2020 06:41:07: 40000000 INFO @ Fri, 16 Oct 2020 06:41:07: 34000000 INFO @ Fri, 16 Oct 2020 06:41:12: 29000000 INFO @ Fri, 16 Oct 2020 06:41:13: 41000000 INFO @ Fri, 16 Oct 2020 06:41:13: 35000000 INFO @ Fri, 16 Oct 2020 06:41:17: 30000000 INFO @ Fri, 16 Oct 2020 06:41:18: 42000000 INFO @ Fri, 16 Oct 2020 06:41:18: 36000000 INFO @ Fri, 16 Oct 2020 06:41:22: 31000000 INFO @ Fri, 16 Oct 2020 06:41:23: 43000000 INFO @ Fri, 16 Oct 2020 06:41:23: 37000000 INFO @ Fri, 16 Oct 2020 06:41:28: 32000000 INFO @ Fri, 16 Oct 2020 06:41:28: 44000000 INFO @ Fri, 16 Oct 2020 06:41:29: 38000000 INFO @ Fri, 16 Oct 2020 06:41:33: 33000000 INFO @ Fri, 16 Oct 2020 06:41:34: 45000000 INFO @ Fri, 16 Oct 2020 06:41:34: 39000000 INFO @ Fri, 16 Oct 2020 06:41:38: 34000000 INFO @ Fri, 16 Oct 2020 06:41:39: 46000000 INFO @ Fri, 16 Oct 2020 06:41:39: 40000000 INFO @ Fri, 16 Oct 2020 06:41:43: 35000000 INFO @ Fri, 16 Oct 2020 06:41:44: 47000000 INFO @ Fri, 16 Oct 2020 06:41:44: 41000000 INFO @ Fri, 16 Oct 2020 06:41:49: 36000000 INFO @ Fri, 16 Oct 2020 06:41:49: 48000000 INFO @ Fri, 16 Oct 2020 06:41:50: 42000000 INFO @ Fri, 16 Oct 2020 06:41:54: 37000000 INFO @ Fri, 16 Oct 2020 06:41:55: 49000000 INFO @ Fri, 16 Oct 2020 06:41:55: 43000000 INFO @ Fri, 16 Oct 2020 06:41:59: 38000000 INFO @ Fri, 16 Oct 2020 06:42:00: 44000000 INFO @ Fri, 16 Oct 2020 06:42:00: 50000000 INFO @ Fri, 16 Oct 2020 06:42:05: 39000000 INFO @ Fri, 16 Oct 2020 06:42:05: 45000000 INFO @ Fri, 16 Oct 2020 06:42:05: 51000000 INFO @ Fri, 16 Oct 2020 06:42:10: 40000000 INFO @ Fri, 16 Oct 2020 06:42:10: 46000000 INFO @ Fri, 16 Oct 2020 06:42:11: 52000000 INFO @ Fri, 16 Oct 2020 06:42:15: 41000000 INFO @ Fri, 16 Oct 2020 06:42:16: 47000000 INFO @ Fri, 16 Oct 2020 06:42:16: 53000000 INFO @ Fri, 16 Oct 2020 06:42:20: 42000000 INFO @ Fri, 16 Oct 2020 06:42:21: 48000000 INFO @ Fri, 16 Oct 2020 06:42:21: 54000000 INFO @ Fri, 16 Oct 2020 06:42:26: 43000000 INFO @ Fri, 16 Oct 2020 06:42:26: 49000000 INFO @ Fri, 16 Oct 2020 06:42:26: 55000000 INFO @ Fri, 16 Oct 2020 06:42:31: 44000000 INFO @ Fri, 16 Oct 2020 06:42:31: 50000000 INFO @ Fri, 16 Oct 2020 06:42:32: 56000000 INFO @ Fri, 16 Oct 2020 06:42:36: 45000000 INFO @ Fri, 16 Oct 2020 06:42:37: 51000000 INFO @ Fri, 16 Oct 2020 06:42:37: 57000000 INFO @ Fri, 16 Oct 2020 06:42:41: 46000000 INFO @ Fri, 16 Oct 2020 06:42:42: 52000000 INFO @ Fri, 16 Oct 2020 06:42:42: 58000000 INFO @ Fri, 16 Oct 2020 06:42:47: 47000000 INFO @ Fri, 16 Oct 2020 06:42:47: 53000000 INFO @ Fri, 16 Oct 2020 06:42:48: 59000000 INFO @ Fri, 16 Oct 2020 06:42:52: 48000000 INFO @ Fri, 16 Oct 2020 06:42:52: 54000000 INFO @ Fri, 16 Oct 2020 06:42:53: 60000000 INFO @ Fri, 16 Oct 2020 06:42:57: 49000000 INFO @ Fri, 16 Oct 2020 06:42:58: 55000000 INFO @ Fri, 16 Oct 2020 06:42:58: 61000000 INFO @ Fri, 16 Oct 2020 06:42:59: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:42:59: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:42:59: #1 total tags in treatment: 61016811 INFO @ Fri, 16 Oct 2020 06:42:59: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:42:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:43:00: #1 tags after filtering in treatment: 61016781 INFO @ Fri, 16 Oct 2020 06:43:00: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:43:00: #1 finished! INFO @ Fri, 16 Oct 2020 06:43:00: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:43:00: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:43:02: 50000000 INFO @ Fri, 16 Oct 2020 06:43:03: 56000000 INFO @ Fri, 16 Oct 2020 06:43:05: #2 number of paired peaks: 6459 INFO @ Fri, 16 Oct 2020 06:43:05: start model_add_line... INFO @ Fri, 16 Oct 2020 06:43:05: start X-correlation... INFO @ Fri, 16 Oct 2020 06:43:05: end of X-cor INFO @ Fri, 16 Oct 2020 06:43:05: #2 finished! INFO @ Fri, 16 Oct 2020 06:43:05: #2 predicted fragment length is 49 bps INFO @ Fri, 16 Oct 2020 06:43:05: #2 alternative fragment length(s) may be 49,539 bps INFO @ Fri, 16 Oct 2020 06:43:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.05_model.r WARNING @ Fri, 16 Oct 2020 06:43:05: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 06:43:05: #2 You may need to consider one of the other alternative d(s): 49,539 WARNING @ Fri, 16 Oct 2020 06:43:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 06:43:05: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:43:05: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:43:08: 51000000 INFO @ Fri, 16 Oct 2020 06:43:08: 57000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 06:43:13: 52000000 INFO @ Fri, 16 Oct 2020 06:43:13: 58000000 INFO @ Fri, 16 Oct 2020 06:43:18: 53000000 INFO @ Fri, 16 Oct 2020 06:43:19: 59000000 INFO @ Fri, 16 Oct 2020 06:43:23: 54000000 INFO @ Fri, 16 Oct 2020 06:43:24: 60000000 INFO @ Fri, 16 Oct 2020 06:43:28: 55000000 INFO @ Fri, 16 Oct 2020 06:43:29: 61000000 INFO @ Fri, 16 Oct 2020 06:43:30: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:43:30: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:43:30: #1 total tags in treatment: 61016811 INFO @ Fri, 16 Oct 2020 06:43:30: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:43:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:43:31: #1 tags after filtering in treatment: 61016781 INFO @ Fri, 16 Oct 2020 06:43:31: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:43:31: #1 finished! INFO @ Fri, 16 Oct 2020 06:43:31: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:43:31: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:43:33: 56000000 INFO @ Fri, 16 Oct 2020 06:43:35: #2 number of paired peaks: 6459 INFO @ Fri, 16 Oct 2020 06:43:35: start model_add_line... INFO @ Fri, 16 Oct 2020 06:43:36: start X-correlation... INFO @ Fri, 16 Oct 2020 06:43:36: end of X-cor INFO @ Fri, 16 Oct 2020 06:43:36: #2 finished! INFO @ Fri, 16 Oct 2020 06:43:36: #2 predicted fragment length is 49 bps INFO @ Fri, 16 Oct 2020 06:43:36: #2 alternative fragment length(s) may be 49,539 bps INFO @ Fri, 16 Oct 2020 06:43:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.10_model.r WARNING @ Fri, 16 Oct 2020 06:43:36: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 06:43:36: #2 You may need to consider one of the other alternative d(s): 49,539 WARNING @ Fri, 16 Oct 2020 06:43:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 06:43:36: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:43:36: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:43:38: 57000000 INFO @ Fri, 16 Oct 2020 06:43:44: 58000000 INFO @ Fri, 16 Oct 2020 06:43:48: 59000000 INFO @ Fri, 16 Oct 2020 06:43:54: 60000000 INFO @ Fri, 16 Oct 2020 06:43:58: 61000000 INFO @ Fri, 16 Oct 2020 06:43:59: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:43:59: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:43:59: #1 total tags in treatment: 61016811 INFO @ Fri, 16 Oct 2020 06:43:59: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:43:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:44:00: #1 tags after filtering in treatment: 61016781 INFO @ Fri, 16 Oct 2020 06:44:00: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:44:00: #1 finished! INFO @ Fri, 16 Oct 2020 06:44:00: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:44:00: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:44:05: #2 number of paired peaks: 6459 INFO @ Fri, 16 Oct 2020 06:44:05: start model_add_line... INFO @ Fri, 16 Oct 2020 06:44:05: start X-correlation... INFO @ Fri, 16 Oct 2020 06:44:05: end of X-cor INFO @ Fri, 16 Oct 2020 06:44:05: #2 finished! INFO @ Fri, 16 Oct 2020 06:44:05: #2 predicted fragment length is 49 bps INFO @ Fri, 16 Oct 2020 06:44:05: #2 alternative fragment length(s) may be 49,539 bps INFO @ Fri, 16 Oct 2020 06:44:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.20_model.r WARNING @ Fri, 16 Oct 2020 06:44:05: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 06:44:05: #2 You may need to consider one of the other alternative d(s): 49,539 WARNING @ Fri, 16 Oct 2020 06:44:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 06:44:05: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:44:05: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:45:16: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 06:45:51: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:46:16: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:46:26: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.05_peaks.xls INFO @ Fri, 16 Oct 2020 06:46:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:46:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.05_summits.bed INFO @ Fri, 16 Oct 2020 06:46:26: Done! pass1 - making usageList (73 chroms): 1 millis pass2 - checking and writing primary data (3339 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:47:01: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.10_peaks.xls INFO @ Fri, 16 Oct 2020 06:47:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:47:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.10_summits.bed INFO @ Fri, 16 Oct 2020 06:47:01: Done! pass1 - making usageList (62 chroms): 0 millis pass2 - checking and writing primary data (1746 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:47:25: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.20_peaks.xls INFO @ Fri, 16 Oct 2020 06:47:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:47:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745134/ERX2745134.20_summits.bed INFO @ Fri, 16 Oct 2020 06:47:25: Done! pass1 - making usageList (42 chroms): 1 millis pass2 - checking and writing primary data (770 records, 4 fields): 3 millis CompletedMACS2peakCalling