Job ID = 14519515 SRX = ERX2745098 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 123837540 spots for ERR2731873/ERR2731873.sra Written 123837540 spots for ERR2731873/ERR2731873.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:02 Multiseed full-index search: 01:19:58 123837540 reads; of these: 123837540 (100.00%) were unpaired; of these: 3376855 (2.73%) aligned 0 times 95355223 (77.00%) aligned exactly 1 time 25105462 (20.27%) aligned >1 times 97.27% overall alignment rate Time searching: 01:20:03 Overall time: 01:20:03 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 52 files... [bam_rmdupse_core] 43418528 / 120460685 = 0.3604 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 17:18:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 17:18:53: #1 read tag files... INFO @ Sat, 15 Jan 2022 17:18:53: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 17:18:59: 1000000 INFO @ Sat, 15 Jan 2022 17:19:05: 2000000 INFO @ Sat, 15 Jan 2022 17:19:11: 3000000 INFO @ Sat, 15 Jan 2022 17:19:17: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 17:19:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 17:19:23: #1 read tag files... INFO @ Sat, 15 Jan 2022 17:19:23: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 17:19:23: 5000000 INFO @ Sat, 15 Jan 2022 17:19:30: 6000000 INFO @ Sat, 15 Jan 2022 17:19:31: 1000000 INFO @ Sat, 15 Jan 2022 17:19:36: 7000000 INFO @ Sat, 15 Jan 2022 17:19:38: 2000000 INFO @ Sat, 15 Jan 2022 17:19:42: 8000000 INFO @ Sat, 15 Jan 2022 17:19:46: 3000000 INFO @ Sat, 15 Jan 2022 17:19:49: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 17:19:53: 4000000 INFO @ Sat, 15 Jan 2022 17:19:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 17:19:53: #1 read tag files... INFO @ Sat, 15 Jan 2022 17:19:53: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 17:19:55: 10000000 INFO @ Sat, 15 Jan 2022 17:20:00: 5000000 INFO @ Sat, 15 Jan 2022 17:20:01: 1000000 INFO @ Sat, 15 Jan 2022 17:20:02: 11000000 INFO @ Sat, 15 Jan 2022 17:20:07: 6000000 INFO @ Sat, 15 Jan 2022 17:20:09: 12000000 INFO @ Sat, 15 Jan 2022 17:20:10: 2000000 INFO @ Sat, 15 Jan 2022 17:20:13: 7000000 INFO @ Sat, 15 Jan 2022 17:20:16: 13000000 INFO @ Sat, 15 Jan 2022 17:20:18: 3000000 INFO @ Sat, 15 Jan 2022 17:20:21: 8000000 INFO @ Sat, 15 Jan 2022 17:20:22: 14000000 INFO @ Sat, 15 Jan 2022 17:20:27: 4000000 INFO @ Sat, 15 Jan 2022 17:20:28: 9000000 INFO @ Sat, 15 Jan 2022 17:20:29: 15000000 INFO @ Sat, 15 Jan 2022 17:20:34: 10000000 INFO @ Sat, 15 Jan 2022 17:20:35: 5000000 INFO @ Sat, 15 Jan 2022 17:20:36: 16000000 INFO @ Sat, 15 Jan 2022 17:20:42: 11000000 INFO @ Sat, 15 Jan 2022 17:20:43: 6000000 INFO @ Sat, 15 Jan 2022 17:20:43: 17000000 INFO @ Sat, 15 Jan 2022 17:20:49: 12000000 INFO @ Sat, 15 Jan 2022 17:20:50: 18000000 INFO @ Sat, 15 Jan 2022 17:20:50: 7000000 INFO @ Sat, 15 Jan 2022 17:20:56: 13000000 INFO @ Sat, 15 Jan 2022 17:20:57: 19000000 INFO @ Sat, 15 Jan 2022 17:20:58: 8000000 INFO @ Sat, 15 Jan 2022 17:21:03: 14000000 INFO @ Sat, 15 Jan 2022 17:21:04: 20000000 INFO @ Sat, 15 Jan 2022 17:21:06: 9000000 INFO @ Sat, 15 Jan 2022 17:21:10: 15000000 INFO @ Sat, 15 Jan 2022 17:21:11: 21000000 INFO @ Sat, 15 Jan 2022 17:21:14: 10000000 INFO @ Sat, 15 Jan 2022 17:21:17: 16000000 INFO @ Sat, 15 Jan 2022 17:21:18: 22000000 INFO @ Sat, 15 Jan 2022 17:21:21: 11000000 INFO @ Sat, 15 Jan 2022 17:21:24: 17000000 INFO @ Sat, 15 Jan 2022 17:21:25: 23000000 INFO @ Sat, 15 Jan 2022 17:21:28: 12000000 INFO @ Sat, 15 Jan 2022 17:21:31: 18000000 INFO @ Sat, 15 Jan 2022 17:21:32: 24000000 INFO @ Sat, 15 Jan 2022 17:21:35: 13000000 INFO @ Sat, 15 Jan 2022 17:21:38: 19000000 INFO @ Sat, 15 Jan 2022 17:21:39: 25000000 INFO @ Sat, 15 Jan 2022 17:21:42: 14000000 INFO @ Sat, 15 Jan 2022 17:21:45: 20000000 INFO @ Sat, 15 Jan 2022 17:21:46: 26000000 INFO @ Sat, 15 Jan 2022 17:21:49: 15000000 INFO @ Sat, 15 Jan 2022 17:21:52: 21000000 INFO @ Sat, 15 Jan 2022 17:21:53: 27000000 INFO @ Sat, 15 Jan 2022 17:21:56: 16000000 INFO @ Sat, 15 Jan 2022 17:21:59: 22000000 INFO @ Sat, 15 Jan 2022 17:22:00: 28000000 INFO @ Sat, 15 Jan 2022 17:22:03: 17000000 INFO @ Sat, 15 Jan 2022 17:22:06: 23000000 INFO @ Sat, 15 Jan 2022 17:22:08: 29000000 INFO @ Sat, 15 Jan 2022 17:22:10: 18000000 INFO @ Sat, 15 Jan 2022 17:22:13: 24000000 INFO @ Sat, 15 Jan 2022 17:22:15: 30000000 INFO @ Sat, 15 Jan 2022 17:22:17: 19000000 INFO @ Sat, 15 Jan 2022 17:22:20: 25000000 INFO @ Sat, 15 Jan 2022 17:22:22: 31000000 INFO @ Sat, 15 Jan 2022 17:22:24: 20000000 INFO @ Sat, 15 Jan 2022 17:22:27: 26000000 INFO @ Sat, 15 Jan 2022 17:22:29: 32000000 INFO @ Sat, 15 Jan 2022 17:22:31: 21000000 INFO @ Sat, 15 Jan 2022 17:22:35: 27000000 INFO @ Sat, 15 Jan 2022 17:22:36: 33000000 INFO @ Sat, 15 Jan 2022 17:22:38: 22000000 INFO @ Sat, 15 Jan 2022 17:22:42: 28000000 INFO @ Sat, 15 Jan 2022 17:22:43: 34000000 INFO @ Sat, 15 Jan 2022 17:22:45: 23000000 INFO @ Sat, 15 Jan 2022 17:22:49: 29000000 INFO @ Sat, 15 Jan 2022 17:22:51: 35000000 INFO @ Sat, 15 Jan 2022 17:22:52: 24000000 INFO @ Sat, 15 Jan 2022 17:22:56: 30000000 INFO @ Sat, 15 Jan 2022 17:22:58: 36000000 INFO @ Sat, 15 Jan 2022 17:22:59: 25000000 INFO @ Sat, 15 Jan 2022 17:23:03: 31000000 INFO @ Sat, 15 Jan 2022 17:23:05: 37000000 INFO @ Sat, 15 Jan 2022 17:23:07: 26000000 INFO @ Sat, 15 Jan 2022 17:23:10: 32000000 INFO @ Sat, 15 Jan 2022 17:23:12: 38000000 INFO @ Sat, 15 Jan 2022 17:23:14: 27000000 INFO @ Sat, 15 Jan 2022 17:23:17: 33000000 INFO @ Sat, 15 Jan 2022 17:23:19: 39000000 INFO @ Sat, 15 Jan 2022 17:23:21: 28000000 INFO @ Sat, 15 Jan 2022 17:23:24: 34000000 INFO @ Sat, 15 Jan 2022 17:23:26: 40000000 INFO @ Sat, 15 Jan 2022 17:23:28: 29000000 INFO @ Sat, 15 Jan 2022 17:23:31: 35000000 INFO @ Sat, 15 Jan 2022 17:23:33: 41000000 INFO @ Sat, 15 Jan 2022 17:23:35: 30000000 INFO @ Sat, 15 Jan 2022 17:23:39: 36000000 INFO @ Sat, 15 Jan 2022 17:23:41: 42000000 INFO @ Sat, 15 Jan 2022 17:23:42: 31000000 INFO @ Sat, 15 Jan 2022 17:23:46: 37000000 INFO @ Sat, 15 Jan 2022 17:23:48: 43000000 INFO @ Sat, 15 Jan 2022 17:23:49: 32000000 INFO @ Sat, 15 Jan 2022 17:23:53: 38000000 INFO @ Sat, 15 Jan 2022 17:23:55: 44000000 INFO @ Sat, 15 Jan 2022 17:23:56: 33000000 INFO @ Sat, 15 Jan 2022 17:24:00: 39000000 INFO @ Sat, 15 Jan 2022 17:24:02: 45000000 INFO @ Sat, 15 Jan 2022 17:24:03: 34000000 INFO @ Sat, 15 Jan 2022 17:24:08: 40000000 INFO @ Sat, 15 Jan 2022 17:24:09: 46000000 INFO @ Sat, 15 Jan 2022 17:24:10: 35000000 INFO @ Sat, 15 Jan 2022 17:24:15: 41000000 INFO @ Sat, 15 Jan 2022 17:24:17: 47000000 INFO @ Sat, 15 Jan 2022 17:24:17: 36000000 INFO @ Sat, 15 Jan 2022 17:24:22: 42000000 INFO @ Sat, 15 Jan 2022 17:24:24: 48000000 INFO @ Sat, 15 Jan 2022 17:24:25: 37000000 INFO @ Sat, 15 Jan 2022 17:24:29: 43000000 INFO @ Sat, 15 Jan 2022 17:24:31: 49000000 INFO @ Sat, 15 Jan 2022 17:24:32: 38000000 INFO @ Sat, 15 Jan 2022 17:24:36: 44000000 INFO @ Sat, 15 Jan 2022 17:24:38: 50000000 INFO @ Sat, 15 Jan 2022 17:24:39: 39000000 INFO @ Sat, 15 Jan 2022 17:24:44: 45000000 INFO @ Sat, 15 Jan 2022 17:24:45: 51000000 INFO @ Sat, 15 Jan 2022 17:24:46: 40000000 INFO @ Sat, 15 Jan 2022 17:24:51: 46000000 INFO @ Sat, 15 Jan 2022 17:24:52: 52000000 INFO @ Sat, 15 Jan 2022 17:24:53: 41000000 INFO @ Sat, 15 Jan 2022 17:24:58: 47000000 INFO @ Sat, 15 Jan 2022 17:24:59: 53000000 INFO @ Sat, 15 Jan 2022 17:25:01: 42000000 INFO @ Sat, 15 Jan 2022 17:25:05: 48000000 INFO @ Sat, 15 Jan 2022 17:25:06: 54000000 INFO @ Sat, 15 Jan 2022 17:25:08: 43000000 INFO @ Sat, 15 Jan 2022 17:25:12: 49000000 INFO @ Sat, 15 Jan 2022 17:25:13: 55000000 INFO @ Sat, 15 Jan 2022 17:25:15: 44000000 INFO @ Sat, 15 Jan 2022 17:25:19: 50000000 INFO @ Sat, 15 Jan 2022 17:25:20: 56000000 INFO @ Sat, 15 Jan 2022 17:25:23: 45000000 INFO @ Sat, 15 Jan 2022 17:25:26: 51000000 INFO @ Sat, 15 Jan 2022 17:25:27: 57000000 INFO @ Sat, 15 Jan 2022 17:25:31: 46000000 INFO @ Sat, 15 Jan 2022 17:25:33: 52000000 INFO @ Sat, 15 Jan 2022 17:25:33: 58000000 INFO @ Sat, 15 Jan 2022 17:25:38: 47000000 INFO @ Sat, 15 Jan 2022 17:25:40: 53000000 INFO @ Sat, 15 Jan 2022 17:25:41: 59000000 INFO @ Sat, 15 Jan 2022 17:25:45: 48000000 INFO @ Sat, 15 Jan 2022 17:25:47: 54000000 INFO @ Sat, 15 Jan 2022 17:25:49: 60000000 INFO @ Sat, 15 Jan 2022 17:25:52: 49000000 INFO @ Sat, 15 Jan 2022 17:25:54: 55000000 INFO @ Sat, 15 Jan 2022 17:25:56: 61000000 INFO @ Sat, 15 Jan 2022 17:25:59: 50000000 INFO @ Sat, 15 Jan 2022 17:26:01: 56000000 INFO @ Sat, 15 Jan 2022 17:26:03: 62000000 INFO @ Sat, 15 Jan 2022 17:26:06: 51000000 INFO @ Sat, 15 Jan 2022 17:26:07: 57000000 INFO @ Sat, 15 Jan 2022 17:26:11: 63000000 INFO @ Sat, 15 Jan 2022 17:26:13: 52000000 INFO @ Sat, 15 Jan 2022 17:26:14: 58000000 INFO @ Sat, 15 Jan 2022 17:26:18: 64000000 INFO @ Sat, 15 Jan 2022 17:26:19: 53000000 INFO @ Sat, 15 Jan 2022 17:26:21: 59000000 INFO @ Sat, 15 Jan 2022 17:26:26: 65000000 INFO @ Sat, 15 Jan 2022 17:26:26: 54000000 INFO @ Sat, 15 Jan 2022 17:26:28: 60000000 INFO @ Sat, 15 Jan 2022 17:26:33: 55000000 INFO @ Sat, 15 Jan 2022 17:26:33: 66000000 INFO @ Sat, 15 Jan 2022 17:26:35: 61000000 INFO @ Sat, 15 Jan 2022 17:26:40: 56000000 INFO @ Sat, 15 Jan 2022 17:26:41: 67000000 INFO @ Sat, 15 Jan 2022 17:26:42: 62000000 INFO @ Sat, 15 Jan 2022 17:26:47: 57000000 INFO @ Sat, 15 Jan 2022 17:26:48: 68000000 INFO @ Sat, 15 Jan 2022 17:26:48: 63000000 INFO @ Sat, 15 Jan 2022 17:26:54: 58000000 INFO @ Sat, 15 Jan 2022 17:26:55: 69000000 INFO @ Sat, 15 Jan 2022 17:26:55: 64000000 INFO @ Sat, 15 Jan 2022 17:27:01: 59000000 INFO @ Sat, 15 Jan 2022 17:27:02: 70000000 INFO @ Sat, 15 Jan 2022 17:27:03: 65000000 INFO @ Sat, 15 Jan 2022 17:27:08: 60000000 INFO @ Sat, 15 Jan 2022 17:27:10: 71000000 INFO @ Sat, 15 Jan 2022 17:27:10: 66000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 17:27:15: 61000000 INFO @ Sat, 15 Jan 2022 17:27:17: 72000000 INFO @ Sat, 15 Jan 2022 17:27:17: 67000000 INFO @ Sat, 15 Jan 2022 17:27:22: 62000000 INFO @ Sat, 15 Jan 2022 17:27:24: 68000000 INFO @ Sat, 15 Jan 2022 17:27:24: 73000000 INFO @ Sat, 15 Jan 2022 17:27:29: 63000000 INFO @ Sat, 15 Jan 2022 17:27:31: 69000000 INFO @ Sat, 15 Jan 2022 17:27:31: 74000000 INFO @ Sat, 15 Jan 2022 17:27:35: 64000000 INFO @ Sat, 15 Jan 2022 17:27:38: 70000000 INFO @ Sat, 15 Jan 2022 17:27:38: 75000000 INFO @ Sat, 15 Jan 2022 17:27:42: 65000000 INFO @ Sat, 15 Jan 2022 17:27:45: 71000000 INFO @ Sat, 15 Jan 2022 17:27:45: 76000000 INFO @ Sat, 15 Jan 2022 17:27:49: 66000000 INFO @ Sat, 15 Jan 2022 17:27:52: 72000000 INFO @ Sat, 15 Jan 2022 17:27:52: 77000000 INFO @ Sat, 15 Jan 2022 17:27:53: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 17:27:53: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 17:27:53: #1 total tags in treatment: 77042157 INFO @ Sat, 15 Jan 2022 17:27:53: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 17:27:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 17:27:55: #1 tags after filtering in treatment: 77042076 INFO @ Sat, 15 Jan 2022 17:27:55: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 17:27:55: #1 finished! INFO @ Sat, 15 Jan 2022 17:27:55: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 17:27:55: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 17:27:56: 67000000 INFO @ Sat, 15 Jan 2022 17:27:59: 73000000 INFO @ Sat, 15 Jan 2022 17:28:02: 68000000 INFO @ Sat, 15 Jan 2022 17:28:05: 74000000 INFO @ Sat, 15 Jan 2022 17:28:08: #2 number of paired peaks: 115866 INFO @ Sat, 15 Jan 2022 17:28:08: start model_add_line... INFO @ Sat, 15 Jan 2022 17:28:09: 69000000 INFO @ Sat, 15 Jan 2022 17:28:09: start X-correlation... INFO @ Sat, 15 Jan 2022 17:28:09: end of X-cor INFO @ Sat, 15 Jan 2022 17:28:09: #2 finished! INFO @ Sat, 15 Jan 2022 17:28:09: #2 predicted fragment length is 204 bps INFO @ Sat, 15 Jan 2022 17:28:09: #2 alternative fragment length(s) may be 204 bps INFO @ Sat, 15 Jan 2022 17:28:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05_model.r INFO @ Sat, 15 Jan 2022 17:28:09: #3 Call peaks... INFO @ Sat, 15 Jan 2022 17:28:09: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 15 Jan 2022 17:28:12: 75000000 INFO @ Sat, 15 Jan 2022 17:28:15: 70000000 INFO @ Sat, 15 Jan 2022 17:28:18: 76000000 INFO @ Sat, 15 Jan 2022 17:28:23: 71000000 INFO @ Sat, 15 Jan 2022 17:28:25: 77000000 INFO @ Sat, 15 Jan 2022 17:28:26: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 17:28:26: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 17:28:26: #1 total tags in treatment: 77042157 INFO @ Sat, 15 Jan 2022 17:28:26: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 17:28:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 17:28:28: #1 tags after filtering in treatment: 77042076 INFO @ Sat, 15 Jan 2022 17:28:28: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 17:28:28: #1 finished! INFO @ Sat, 15 Jan 2022 17:28:28: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 17:28:28: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 17:28:29: 72000000 INFO @ Sat, 15 Jan 2022 17:28:35: 73000000 INFO @ Sat, 15 Jan 2022 17:28:40: #2 number of paired peaks: 115866 INFO @ Sat, 15 Jan 2022 17:28:40: start model_add_line... INFO @ Sat, 15 Jan 2022 17:28:41: 74000000 INFO @ Sat, 15 Jan 2022 17:28:41: start X-correlation... INFO @ Sat, 15 Jan 2022 17:28:42: end of X-cor INFO @ Sat, 15 Jan 2022 17:28:42: #2 finished! INFO @ Sat, 15 Jan 2022 17:28:42: #2 predicted fragment length is 204 bps INFO @ Sat, 15 Jan 2022 17:28:42: #2 alternative fragment length(s) may be 204 bps INFO @ Sat, 15 Jan 2022 17:28:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10_model.r INFO @ Sat, 15 Jan 2022 17:28:42: #3 Call peaks... INFO @ Sat, 15 Jan 2022 17:28:42: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 15 Jan 2022 17:28:47: 75000000 INFO @ Sat, 15 Jan 2022 17:28:53: 76000000 INFO @ Sat, 15 Jan 2022 17:28:59: 77000000 INFO @ Sat, 15 Jan 2022 17:29:00: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 17:29:00: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 17:29:00: #1 total tags in treatment: 77042157 INFO @ Sat, 15 Jan 2022 17:29:00: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 17:29:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 17:29:02: #1 tags after filtering in treatment: 77042076 INFO @ Sat, 15 Jan 2022 17:29:02: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 17:29:02: #1 finished! INFO @ Sat, 15 Jan 2022 17:29:02: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 17:29:02: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 17:29:14: #2 number of paired peaks: 115866 INFO @ Sat, 15 Jan 2022 17:29:14: start model_add_line... INFO @ Sat, 15 Jan 2022 17:29:16: start X-correlation... INFO @ Sat, 15 Jan 2022 17:29:16: end of X-cor INFO @ Sat, 15 Jan 2022 17:29:16: #2 finished! INFO @ Sat, 15 Jan 2022 17:29:16: #2 predicted fragment length is 204 bps INFO @ Sat, 15 Jan 2022 17:29:16: #2 alternative fragment length(s) may be 204 bps INFO @ Sat, 15 Jan 2022 17:29:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20_model.r INFO @ Sat, 15 Jan 2022 17:29:16: #3 Call peaks... INFO @ Sat, 15 Jan 2022 17:29:16: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Sat, 15 Jan 2022 17:31:24: #3 Call peaks for each chromosome... INFO @ Sat, 15 Jan 2022 17:31:53: #3 Call peaks for each chromosome... INFO @ Sat, 15 Jan 2022 17:32:30: #3 Call peaks for each chromosome... INFO @ Sat, 15 Jan 2022 17:33:32: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05_peaks.xls INFO @ Sat, 15 Jan 2022 17:33:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05_peaks.narrowPeak INFO @ Sat, 15 Jan 2022 17:33:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05_summits.bed INFO @ Sat, 15 Jan 2022 17:33:34: Done! pass1 - making usageList (242 chroms): 15 millis pass2 - checking and writing primary data (82744 records, 4 fields): 117 millis CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 17:34:01: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10_peaks.xls INFO @ Sat, 15 Jan 2022 17:34:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10_peaks.narrowPeak INFO @ Sat, 15 Jan 2022 17:34:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10_summits.bed INFO @ Sat, 15 Jan 2022 17:34:01: Done! pass1 - making usageList (204 chroms): 10 millis pass2 - checking and writing primary data (54424 records, 4 fields): 77 millis CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 17:34:35: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20_peaks.xls INFO @ Sat, 15 Jan 2022 17:34:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20_peaks.narrowPeak INFO @ Sat, 15 Jan 2022 17:34:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20_summits.bed INFO @ Sat, 15 Jan 2022 17:34:35: Done! pass1 - making usageList (154 chroms): 6 millis pass2 - checking and writing primary data (32060 records, 4 fields): 48 millis CompletedMACS2peakCalling