Job ID = 10223547 SRX = ERX2745098 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T17:44:22 prefetch.2.10.7: 1) Downloading 'ERR2731873'... 2020-10-15T17:44:22 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T17:46:53 prefetch.2.10.7: HTTPS download succeed 2020-10-15T17:46:53 prefetch.2.10.7: 1) 'ERR2731873' was downloaded successfully Read 123837540 spots for ERR2731873/ERR2731873.sra Written 123837540 spots for ERR2731873/ERR2731873.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:03 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:14:50 123837540 reads; of these: 123837540 (100.00%) were unpaired; of these: 3376855 (2.73%) aligned 0 times 95355223 (77.00%) aligned exactly 1 time 25105462 (20.27%) aligned >1 times 97.27% overall alignment rate Time searching: 01:14:55 Overall time: 01:14:55 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 52 files... [bam_rmdupse_core] 43418528 / 120460685 = 0.3604 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 04:25:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 04:25:53: #1 read tag files... INFO @ Fri, 16 Oct 2020 04:25:53: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 04:25:58: 1000000 INFO @ Fri, 16 Oct 2020 04:26:04: 2000000 INFO @ Fri, 16 Oct 2020 04:26:09: 3000000 INFO @ Fri, 16 Oct 2020 04:26:14: 4000000 INFO @ Fri, 16 Oct 2020 04:26:19: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 04:26:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 04:26:22: #1 read tag files... INFO @ Fri, 16 Oct 2020 04:26:22: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 04:26:25: 6000000 INFO @ Fri, 16 Oct 2020 04:26:28: 1000000 INFO @ Fri, 16 Oct 2020 04:26:31: 7000000 INFO @ Fri, 16 Oct 2020 04:26:35: 2000000 INFO @ Fri, 16 Oct 2020 04:26:37: 8000000 INFO @ Fri, 16 Oct 2020 04:26:41: 3000000 INFO @ Fri, 16 Oct 2020 04:26:43: 9000000 INFO @ Fri, 16 Oct 2020 04:26:47: 4000000 INFO @ Fri, 16 Oct 2020 04:26:49: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 04:26:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 04:26:52: #1 read tag files... INFO @ Fri, 16 Oct 2020 04:26:52: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 04:26:53: 5000000 INFO @ Fri, 16 Oct 2020 04:26:55: 11000000 INFO @ Fri, 16 Oct 2020 04:26:59: 1000000 INFO @ Fri, 16 Oct 2020 04:26:59: 6000000 INFO @ Fri, 16 Oct 2020 04:27:02: 12000000 INFO @ Fri, 16 Oct 2020 04:27:05: 2000000 INFO @ Fri, 16 Oct 2020 04:27:06: 7000000 INFO @ Fri, 16 Oct 2020 04:27:08: 13000000 INFO @ Fri, 16 Oct 2020 04:27:11: 3000000 INFO @ Fri, 16 Oct 2020 04:27:12: 8000000 INFO @ Fri, 16 Oct 2020 04:27:14: 14000000 INFO @ Fri, 16 Oct 2020 04:27:18: 4000000 INFO @ Fri, 16 Oct 2020 04:27:18: 9000000 INFO @ Fri, 16 Oct 2020 04:27:20: 15000000 INFO @ Fri, 16 Oct 2020 04:27:24: 5000000 INFO @ Fri, 16 Oct 2020 04:27:24: 10000000 INFO @ Fri, 16 Oct 2020 04:27:26: 16000000 INFO @ Fri, 16 Oct 2020 04:27:30: 6000000 INFO @ Fri, 16 Oct 2020 04:27:31: 11000000 INFO @ Fri, 16 Oct 2020 04:27:33: 17000000 INFO @ Fri, 16 Oct 2020 04:27:36: 7000000 INFO @ Fri, 16 Oct 2020 04:27:37: 12000000 INFO @ Fri, 16 Oct 2020 04:27:39: 18000000 INFO @ Fri, 16 Oct 2020 04:27:43: 8000000 INFO @ Fri, 16 Oct 2020 04:27:43: 13000000 INFO @ Fri, 16 Oct 2020 04:27:45: 19000000 INFO @ Fri, 16 Oct 2020 04:27:49: 9000000 INFO @ Fri, 16 Oct 2020 04:27:49: 14000000 INFO @ Fri, 16 Oct 2020 04:27:51: 20000000 INFO @ Fri, 16 Oct 2020 04:27:55: 10000000 INFO @ Fri, 16 Oct 2020 04:27:56: 15000000 INFO @ Fri, 16 Oct 2020 04:27:57: 21000000 INFO @ Fri, 16 Oct 2020 04:28:01: 11000000 INFO @ Fri, 16 Oct 2020 04:28:02: 16000000 INFO @ Fri, 16 Oct 2020 04:28:03: 22000000 INFO @ Fri, 16 Oct 2020 04:28:07: 12000000 INFO @ Fri, 16 Oct 2020 04:28:08: 17000000 INFO @ Fri, 16 Oct 2020 04:28:10: 23000000 INFO @ Fri, 16 Oct 2020 04:28:13: 13000000 INFO @ Fri, 16 Oct 2020 04:28:14: 18000000 INFO @ Fri, 16 Oct 2020 04:28:16: 24000000 INFO @ Fri, 16 Oct 2020 04:28:20: 14000000 INFO @ Fri, 16 Oct 2020 04:28:20: 19000000 INFO @ Fri, 16 Oct 2020 04:28:22: 25000000 INFO @ Fri, 16 Oct 2020 04:28:26: 15000000 INFO @ Fri, 16 Oct 2020 04:28:27: 20000000 INFO @ Fri, 16 Oct 2020 04:28:28: 26000000 INFO @ Fri, 16 Oct 2020 04:28:32: 16000000 INFO @ Fri, 16 Oct 2020 04:28:33: 21000000 INFO @ Fri, 16 Oct 2020 04:28:34: 27000000 INFO @ Fri, 16 Oct 2020 04:28:38: 17000000 INFO @ Fri, 16 Oct 2020 04:28:39: 22000000 INFO @ Fri, 16 Oct 2020 04:28:40: 28000000 INFO @ Fri, 16 Oct 2020 04:28:44: 18000000 INFO @ Fri, 16 Oct 2020 04:28:45: 23000000 INFO @ Fri, 16 Oct 2020 04:28:46: 29000000 INFO @ Fri, 16 Oct 2020 04:28:50: 19000000 INFO @ Fri, 16 Oct 2020 04:28:51: 24000000 INFO @ Fri, 16 Oct 2020 04:28:52: 30000000 INFO @ Fri, 16 Oct 2020 04:28:56: 20000000 INFO @ Fri, 16 Oct 2020 04:28:57: 25000000 INFO @ Fri, 16 Oct 2020 04:28:58: 31000000 INFO @ Fri, 16 Oct 2020 04:29:02: 21000000 INFO @ Fri, 16 Oct 2020 04:29:03: 26000000 INFO @ Fri, 16 Oct 2020 04:29:04: 32000000 INFO @ Fri, 16 Oct 2020 04:29:09: 22000000 INFO @ Fri, 16 Oct 2020 04:29:10: 27000000 INFO @ Fri, 16 Oct 2020 04:29:11: 33000000 INFO @ Fri, 16 Oct 2020 04:29:15: 23000000 INFO @ Fri, 16 Oct 2020 04:29:16: 28000000 INFO @ Fri, 16 Oct 2020 04:29:17: 34000000 INFO @ Fri, 16 Oct 2020 04:29:21: 24000000 INFO @ Fri, 16 Oct 2020 04:29:22: 29000000 INFO @ Fri, 16 Oct 2020 04:29:23: 35000000 INFO @ Fri, 16 Oct 2020 04:29:27: 25000000 INFO @ Fri, 16 Oct 2020 04:29:28: 30000000 INFO @ Fri, 16 Oct 2020 04:29:29: 36000000 INFO @ Fri, 16 Oct 2020 04:29:33: 26000000 INFO @ Fri, 16 Oct 2020 04:29:34: 31000000 INFO @ Fri, 16 Oct 2020 04:29:35: 37000000 INFO @ Fri, 16 Oct 2020 04:29:39: 27000000 INFO @ Fri, 16 Oct 2020 04:29:40: 32000000 INFO @ Fri, 16 Oct 2020 04:29:41: 38000000 INFO @ Fri, 16 Oct 2020 04:29:45: 28000000 INFO @ Fri, 16 Oct 2020 04:29:46: 33000000 INFO @ Fri, 16 Oct 2020 04:29:47: 39000000 INFO @ Fri, 16 Oct 2020 04:29:51: 29000000 INFO @ Fri, 16 Oct 2020 04:29:52: 34000000 INFO @ Fri, 16 Oct 2020 04:29:53: 40000000 INFO @ Fri, 16 Oct 2020 04:29:57: 30000000 INFO @ Fri, 16 Oct 2020 04:29:58: 35000000 INFO @ Fri, 16 Oct 2020 04:29:59: 41000000 INFO @ Fri, 16 Oct 2020 04:30:03: 31000000 INFO @ Fri, 16 Oct 2020 04:30:04: 36000000 INFO @ Fri, 16 Oct 2020 04:30:05: 42000000 INFO @ Fri, 16 Oct 2020 04:30:09: 32000000 INFO @ Fri, 16 Oct 2020 04:30:10: 37000000 INFO @ Fri, 16 Oct 2020 04:30:11: 43000000 INFO @ Fri, 16 Oct 2020 04:30:15: 33000000 INFO @ Fri, 16 Oct 2020 04:30:16: 38000000 INFO @ Fri, 16 Oct 2020 04:30:17: 44000000 INFO @ Fri, 16 Oct 2020 04:30:21: 34000000 INFO @ Fri, 16 Oct 2020 04:30:22: 39000000 INFO @ Fri, 16 Oct 2020 04:30:23: 45000000 INFO @ Fri, 16 Oct 2020 04:30:27: 35000000 INFO @ Fri, 16 Oct 2020 04:30:28: 40000000 INFO @ Fri, 16 Oct 2020 04:30:29: 46000000 INFO @ Fri, 16 Oct 2020 04:30:33: 36000000 INFO @ Fri, 16 Oct 2020 04:30:34: 41000000 INFO @ Fri, 16 Oct 2020 04:30:35: 47000000 INFO @ Fri, 16 Oct 2020 04:30:39: 37000000 INFO @ Fri, 16 Oct 2020 04:30:40: 42000000 INFO @ Fri, 16 Oct 2020 04:30:41: 48000000 INFO @ Fri, 16 Oct 2020 04:30:45: 38000000 INFO @ Fri, 16 Oct 2020 04:30:46: 43000000 INFO @ Fri, 16 Oct 2020 04:30:47: 49000000 INFO @ Fri, 16 Oct 2020 04:30:51: 39000000 INFO @ Fri, 16 Oct 2020 04:30:52: 44000000 INFO @ Fri, 16 Oct 2020 04:30:53: 50000000 INFO @ Fri, 16 Oct 2020 04:30:57: 40000000 INFO @ Fri, 16 Oct 2020 04:30:58: 45000000 INFO @ Fri, 16 Oct 2020 04:30:59: 51000000 INFO @ Fri, 16 Oct 2020 04:31:03: 41000000 INFO @ Fri, 16 Oct 2020 04:31:04: 46000000 INFO @ Fri, 16 Oct 2020 04:31:05: 52000000 INFO @ Fri, 16 Oct 2020 04:31:09: 42000000 INFO @ Fri, 16 Oct 2020 04:31:10: 47000000 INFO @ Fri, 16 Oct 2020 04:31:11: 53000000 INFO @ Fri, 16 Oct 2020 04:31:15: 43000000 INFO @ Fri, 16 Oct 2020 04:31:16: 48000000 INFO @ Fri, 16 Oct 2020 04:31:17: 54000000 INFO @ Fri, 16 Oct 2020 04:31:21: 44000000 INFO @ Fri, 16 Oct 2020 04:31:22: 49000000 INFO @ Fri, 16 Oct 2020 04:31:23: 55000000 INFO @ Fri, 16 Oct 2020 04:31:27: 45000000 INFO @ Fri, 16 Oct 2020 04:31:28: 50000000 INFO @ Fri, 16 Oct 2020 04:31:29: 56000000 INFO @ Fri, 16 Oct 2020 04:31:33: 46000000 INFO @ Fri, 16 Oct 2020 04:31:34: 51000000 INFO @ Fri, 16 Oct 2020 04:31:35: 57000000 INFO @ Fri, 16 Oct 2020 04:31:39: 47000000 INFO @ Fri, 16 Oct 2020 04:31:40: 52000000 INFO @ Fri, 16 Oct 2020 04:31:41: 58000000 INFO @ Fri, 16 Oct 2020 04:31:45: 48000000 INFO @ Fri, 16 Oct 2020 04:31:46: 53000000 INFO @ Fri, 16 Oct 2020 04:31:47: 59000000 INFO @ Fri, 16 Oct 2020 04:31:51: 49000000 INFO @ Fri, 16 Oct 2020 04:31:52: 54000000 INFO @ Fri, 16 Oct 2020 04:31:53: 60000000 INFO @ Fri, 16 Oct 2020 04:31:57: 50000000 INFO @ Fri, 16 Oct 2020 04:31:58: 55000000 INFO @ Fri, 16 Oct 2020 04:31:59: 61000000 INFO @ Fri, 16 Oct 2020 04:32:03: 51000000 INFO @ Fri, 16 Oct 2020 04:32:04: 56000000 INFO @ Fri, 16 Oct 2020 04:32:04: 62000000 INFO @ Fri, 16 Oct 2020 04:32:09: 52000000 INFO @ Fri, 16 Oct 2020 04:32:10: 57000000 INFO @ Fri, 16 Oct 2020 04:32:10: 63000000 INFO @ Fri, 16 Oct 2020 04:32:15: 53000000 INFO @ Fri, 16 Oct 2020 04:32:16: 58000000 INFO @ Fri, 16 Oct 2020 04:32:16: 64000000 INFO @ Fri, 16 Oct 2020 04:32:21: 54000000 INFO @ Fri, 16 Oct 2020 04:32:22: 59000000 INFO @ Fri, 16 Oct 2020 04:32:22: 65000000 INFO @ Fri, 16 Oct 2020 04:32:27: 55000000 INFO @ Fri, 16 Oct 2020 04:32:28: 60000000 INFO @ Fri, 16 Oct 2020 04:32:28: 66000000 INFO @ Fri, 16 Oct 2020 04:32:33: 56000000 INFO @ Fri, 16 Oct 2020 04:32:34: 61000000 INFO @ Fri, 16 Oct 2020 04:32:34: 67000000 INFO @ Fri, 16 Oct 2020 04:32:39: 57000000 INFO @ Fri, 16 Oct 2020 04:32:40: 62000000 INFO @ Fri, 16 Oct 2020 04:32:40: 68000000 INFO @ Fri, 16 Oct 2020 04:32:45: 58000000 INFO @ Fri, 16 Oct 2020 04:32:46: 63000000 INFO @ Fri, 16 Oct 2020 04:32:46: 69000000 INFO @ Fri, 16 Oct 2020 04:32:51: 59000000 INFO @ Fri, 16 Oct 2020 04:32:52: 64000000 INFO @ Fri, 16 Oct 2020 04:32:52: 70000000 INFO @ Fri, 16 Oct 2020 04:32:57: 60000000 INFO @ Fri, 16 Oct 2020 04:32:58: 65000000 INFO @ Fri, 16 Oct 2020 04:32:58: 71000000 INFO @ Fri, 16 Oct 2020 04:33:03: 61000000 INFO @ Fri, 16 Oct 2020 04:33:04: 66000000 INFO @ Fri, 16 Oct 2020 04:33:04: 72000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 04:33:10: 67000000 INFO @ Fri, 16 Oct 2020 04:33:10: 62000000 INFO @ Fri, 16 Oct 2020 04:33:10: 73000000 INFO @ Fri, 16 Oct 2020 04:33:16: 68000000 INFO @ Fri, 16 Oct 2020 04:33:16: 63000000 INFO @ Fri, 16 Oct 2020 04:33:17: 74000000 INFO @ Fri, 16 Oct 2020 04:33:22: 69000000 INFO @ Fri, 16 Oct 2020 04:33:23: 64000000 INFO @ Fri, 16 Oct 2020 04:33:23: 75000000 INFO @ Fri, 16 Oct 2020 04:33:28: 70000000 INFO @ Fri, 16 Oct 2020 04:33:29: 65000000 INFO @ Fri, 16 Oct 2020 04:33:29: 76000000 INFO @ Fri, 16 Oct 2020 04:33:35: 71000000 INFO @ Fri, 16 Oct 2020 04:33:35: 77000000 INFO @ Fri, 16 Oct 2020 04:33:36: 66000000 INFO @ Fri, 16 Oct 2020 04:33:36: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 04:33:36: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 04:33:36: #1 total tags in treatment: 77042157 INFO @ Fri, 16 Oct 2020 04:33:36: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 04:33:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 04:33:38: #1 tags after filtering in treatment: 77042076 INFO @ Fri, 16 Oct 2020 04:33:38: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 04:33:38: #1 finished! INFO @ Fri, 16 Oct 2020 04:33:38: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 04:33:38: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 04:33:41: 72000000 INFO @ Fri, 16 Oct 2020 04:33:42: 67000000 INFO @ Fri, 16 Oct 2020 04:33:47: 73000000 INFO @ Fri, 16 Oct 2020 04:33:48: #2 number of paired peaks: 115866 INFO @ Fri, 16 Oct 2020 04:33:48: start model_add_line... INFO @ Fri, 16 Oct 2020 04:33:49: 68000000 INFO @ Fri, 16 Oct 2020 04:33:50: start X-correlation... INFO @ Fri, 16 Oct 2020 04:33:50: end of X-cor INFO @ Fri, 16 Oct 2020 04:33:50: #2 finished! INFO @ Fri, 16 Oct 2020 04:33:50: #2 predicted fragment length is 204 bps INFO @ Fri, 16 Oct 2020 04:33:50: #2 alternative fragment length(s) may be 204 bps INFO @ Fri, 16 Oct 2020 04:33:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05_model.r INFO @ Fri, 16 Oct 2020 04:33:50: #3 Call peaks... INFO @ Fri, 16 Oct 2020 04:33:50: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 04:33:53: 74000000 INFO @ Fri, 16 Oct 2020 04:33:55: 69000000 INFO @ Fri, 16 Oct 2020 04:33:59: 75000000 INFO @ Fri, 16 Oct 2020 04:34:01: 70000000 INFO @ Fri, 16 Oct 2020 04:34:05: 76000000 INFO @ Fri, 16 Oct 2020 04:34:08: 71000000 INFO @ Fri, 16 Oct 2020 04:34:11: 77000000 INFO @ Fri, 16 Oct 2020 04:34:12: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 04:34:12: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 04:34:12: #1 total tags in treatment: 77042157 INFO @ Fri, 16 Oct 2020 04:34:12: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 04:34:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 04:34:14: #1 tags after filtering in treatment: 77042076 INFO @ Fri, 16 Oct 2020 04:34:14: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 04:34:14: #1 finished! INFO @ Fri, 16 Oct 2020 04:34:14: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 04:34:14: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 04:34:14: 72000000 INFO @ Fri, 16 Oct 2020 04:34:19: 73000000 INFO @ Fri, 16 Oct 2020 04:34:24: #2 number of paired peaks: 115866 INFO @ Fri, 16 Oct 2020 04:34:24: start model_add_line... INFO @ Fri, 16 Oct 2020 04:34:25: 74000000 INFO @ Fri, 16 Oct 2020 04:34:26: start X-correlation... INFO @ Fri, 16 Oct 2020 04:34:26: end of X-cor INFO @ Fri, 16 Oct 2020 04:34:26: #2 finished! INFO @ Fri, 16 Oct 2020 04:34:26: #2 predicted fragment length is 204 bps INFO @ Fri, 16 Oct 2020 04:34:26: #2 alternative fragment length(s) may be 204 bps INFO @ Fri, 16 Oct 2020 04:34:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10_model.r INFO @ Fri, 16 Oct 2020 04:34:26: #3 Call peaks... INFO @ Fri, 16 Oct 2020 04:34:26: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 04:34:31: 75000000 INFO @ Fri, 16 Oct 2020 04:34:36: 76000000 INFO @ Fri, 16 Oct 2020 04:34:42: 77000000 INFO @ Fri, 16 Oct 2020 04:34:43: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 04:34:43: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 04:34:43: #1 total tags in treatment: 77042157 INFO @ Fri, 16 Oct 2020 04:34:43: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 04:34:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 04:34:44: #1 tags after filtering in treatment: 77042076 INFO @ Fri, 16 Oct 2020 04:34:44: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 04:34:44: #1 finished! INFO @ Fri, 16 Oct 2020 04:34:44: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 04:34:44: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 04:34:55: #2 number of paired peaks: 115866 INFO @ Fri, 16 Oct 2020 04:34:55: start model_add_line... INFO @ Fri, 16 Oct 2020 04:34:56: start X-correlation... INFO @ Fri, 16 Oct 2020 04:34:56: end of X-cor INFO @ Fri, 16 Oct 2020 04:34:56: #2 finished! INFO @ Fri, 16 Oct 2020 04:34:56: #2 predicted fragment length is 204 bps INFO @ Fri, 16 Oct 2020 04:34:56: #2 alternative fragment length(s) may be 204 bps INFO @ Fri, 16 Oct 2020 04:34:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20_model.r INFO @ Fri, 16 Oct 2020 04:34:56: #3 Call peaks... INFO @ Fri, 16 Oct 2020 04:34:56: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 04:37:02: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 04:37:30: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 04:38:11: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 04:39:00: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05_peaks.xls INFO @ Fri, 16 Oct 2020 04:39:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 04:39:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.05_summits.bed INFO @ Fri, 16 Oct 2020 04:39:01: Done! pass1 - making usageList (242 chroms): 11 millis pass2 - checking and writing primary data (82744 records, 4 fields): 79 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 04:39:28: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10_peaks.xls INFO @ Fri, 16 Oct 2020 04:39:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 04:39:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.10_summits.bed INFO @ Fri, 16 Oct 2020 04:39:28: Done! pass1 - making usageList (204 chroms): 7 millis pass2 - checking and writing primary data (54424 records, 4 fields): 53 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 04:40:12: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20_peaks.xls INFO @ Fri, 16 Oct 2020 04:40:12: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 04:40:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745098/ERX2745098.20_summits.bed INFO @ Fri, 16 Oct 2020 04:40:12: Done! pass1 - making usageList (154 chroms): 5 millis pass2 - checking and writing primary data (32060 records, 4 fields): 33 millis CompletedMACS2peakCalling