Job ID = 2002137 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 96,324,463 reads read : 96,324,463 reads written : 96,324,463 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:53:25 96324463 reads; of these: 96324463 (100.00%) were unpaired; of these: 2180247 (2.26%) aligned 0 times 80849213 (83.93%) aligned exactly 1 time 13295003 (13.80%) aligned >1 times 97.74% overall alignment rate Time searching: 01:53:27 Overall time: 01:53:27 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 19817478 / 94144216 = 0.2105 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 13:29:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 13:29:59: #1 read tag files... INFO @ Fri, 05 Jul 2019 13:29:59: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 13:29:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 13:29:59: #1 read tag files... INFO @ Fri, 05 Jul 2019 13:29:59: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 13:29:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 13:29:59: #1 read tag files... INFO @ Fri, 05 Jul 2019 13:29:59: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 13:30:08: 1000000 INFO @ Fri, 05 Jul 2019 13:30:09: 1000000 INFO @ Fri, 05 Jul 2019 13:30:09: 1000000 INFO @ Fri, 05 Jul 2019 13:30:16: 2000000 INFO @ Fri, 05 Jul 2019 13:30:18: 2000000 INFO @ Fri, 05 Jul 2019 13:30:18: 2000000 INFO @ Fri, 05 Jul 2019 13:30:24: 3000000 INFO @ Fri, 05 Jul 2019 13:30:27: 3000000 INFO @ Fri, 05 Jul 2019 13:30:27: 3000000 INFO @ Fri, 05 Jul 2019 13:30:32: 4000000 INFO @ Fri, 05 Jul 2019 13:30:36: 4000000 INFO @ Fri, 05 Jul 2019 13:30:36: 4000000 INFO @ Fri, 05 Jul 2019 13:30:41: 5000000 INFO @ Fri, 05 Jul 2019 13:30:45: 5000000 INFO @ Fri, 05 Jul 2019 13:30:45: 5000000 INFO @ Fri, 05 Jul 2019 13:30:49: 6000000 INFO @ Fri, 05 Jul 2019 13:30:54: 6000000 INFO @ Fri, 05 Jul 2019 13:30:54: 6000000 INFO @ Fri, 05 Jul 2019 13:30:57: 7000000 INFO @ Fri, 05 Jul 2019 13:31:03: 7000000 INFO @ Fri, 05 Jul 2019 13:31:03: 7000000 INFO @ Fri, 05 Jul 2019 13:31:05: 8000000 INFO @ Fri, 05 Jul 2019 13:31:12: 8000000 INFO @ Fri, 05 Jul 2019 13:31:12: 8000000 INFO @ Fri, 05 Jul 2019 13:31:13: 9000000 INFO @ Fri, 05 Jul 2019 13:31:21: 9000000 INFO @ Fri, 05 Jul 2019 13:31:21: 9000000 INFO @ Fri, 05 Jul 2019 13:31:21: 10000000 INFO @ Fri, 05 Jul 2019 13:31:29: 11000000 INFO @ Fri, 05 Jul 2019 13:31:30: 10000000 INFO @ Fri, 05 Jul 2019 13:31:30: 10000000 INFO @ Fri, 05 Jul 2019 13:31:37: 12000000 INFO @ Fri, 05 Jul 2019 13:31:39: 11000000 INFO @ Fri, 05 Jul 2019 13:31:39: 11000000 INFO @ Fri, 05 Jul 2019 13:31:45: 13000000 INFO @ Fri, 05 Jul 2019 13:31:47: 12000000 INFO @ Fri, 05 Jul 2019 13:31:48: 12000000 INFO @ Fri, 05 Jul 2019 13:31:53: 14000000 INFO @ Fri, 05 Jul 2019 13:31:56: 13000000 INFO @ Fri, 05 Jul 2019 13:31:56: 13000000 INFO @ Fri, 05 Jul 2019 13:32:01: 15000000 INFO @ Fri, 05 Jul 2019 13:32:05: 14000000 INFO @ Fri, 05 Jul 2019 13:32:05: 14000000 INFO @ Fri, 05 Jul 2019 13:32:09: 16000000 INFO @ Fri, 05 Jul 2019 13:32:14: 15000000 INFO @ Fri, 05 Jul 2019 13:32:14: 15000000 INFO @ Fri, 05 Jul 2019 13:32:17: 17000000 INFO @ Fri, 05 Jul 2019 13:32:23: 16000000 INFO @ Fri, 05 Jul 2019 13:32:23: 16000000 INFO @ Fri, 05 Jul 2019 13:32:25: 18000000 INFO @ Fri, 05 Jul 2019 13:32:32: 17000000 INFO @ Fri, 05 Jul 2019 13:32:32: 17000000 INFO @ Fri, 05 Jul 2019 13:32:32: 19000000 INFO @ Fri, 05 Jul 2019 13:32:40: 20000000 INFO @ Fri, 05 Jul 2019 13:32:40: 18000000 INFO @ Fri, 05 Jul 2019 13:32:40: 18000000 INFO @ Fri, 05 Jul 2019 13:32:48: 21000000 INFO @ Fri, 05 Jul 2019 13:32:49: 19000000 INFO @ Fri, 05 Jul 2019 13:32:49: 19000000 INFO @ Fri, 05 Jul 2019 13:32:56: 22000000 INFO @ Fri, 05 Jul 2019 13:32:58: 20000000 INFO @ Fri, 05 Jul 2019 13:32:58: 20000000 INFO @ Fri, 05 Jul 2019 13:33:04: 23000000 INFO @ Fri, 05 Jul 2019 13:33:07: 21000000 INFO @ Fri, 05 Jul 2019 13:33:07: 21000000 INFO @ Fri, 05 Jul 2019 13:33:12: 24000000 INFO @ Fri, 05 Jul 2019 13:33:16: 22000000 INFO @ Fri, 05 Jul 2019 13:33:16: 22000000 INFO @ Fri, 05 Jul 2019 13:33:20: 25000000 INFO @ Fri, 05 Jul 2019 13:33:24: 23000000 INFO @ Fri, 05 Jul 2019 13:33:24: 23000000 INFO @ Fri, 05 Jul 2019 13:33:28: 26000000 INFO @ Fri, 05 Jul 2019 13:33:33: 24000000 INFO @ Fri, 05 Jul 2019 13:33:33: 24000000 INFO @ Fri, 05 Jul 2019 13:33:36: 27000000 INFO @ Fri, 05 Jul 2019 13:33:42: 25000000 INFO @ Fri, 05 Jul 2019 13:33:42: 25000000 INFO @ Fri, 05 Jul 2019 13:33:43: 28000000 INFO @ Fri, 05 Jul 2019 13:33:51: 26000000 INFO @ Fri, 05 Jul 2019 13:33:51: 26000000 INFO @ Fri, 05 Jul 2019 13:33:51: 29000000 INFO @ Fri, 05 Jul 2019 13:33:59: 30000000 INFO @ Fri, 05 Jul 2019 13:34:00: 27000000 INFO @ Fri, 05 Jul 2019 13:34:00: 27000000 INFO @ Fri, 05 Jul 2019 13:34:07: 31000000 INFO @ Fri, 05 Jul 2019 13:34:08: 28000000 INFO @ Fri, 05 Jul 2019 13:34:08: 28000000 INFO @ Fri, 05 Jul 2019 13:34:15: 32000000 INFO @ Fri, 05 Jul 2019 13:34:17: 29000000 INFO @ Fri, 05 Jul 2019 13:34:17: 29000000 INFO @ Fri, 05 Jul 2019 13:34:23: 33000000 INFO @ Fri, 05 Jul 2019 13:34:25: 30000000 INFO @ Fri, 05 Jul 2019 13:34:26: 30000000 INFO @ Fri, 05 Jul 2019 13:34:31: 34000000 INFO @ Fri, 05 Jul 2019 13:34:33: 31000000 INFO @ Fri, 05 Jul 2019 13:34:35: 31000000 INFO @ Fri, 05 Jul 2019 13:34:39: 35000000 INFO @ Fri, 05 Jul 2019 13:34:41: 32000000 INFO @ Fri, 05 Jul 2019 13:34:44: 32000000 INFO @ Fri, 05 Jul 2019 13:34:46: 36000000 INFO @ Fri, 05 Jul 2019 13:34:49: 33000000 INFO @ Fri, 05 Jul 2019 13:34:54: 37000000 INFO @ Fri, 05 Jul 2019 13:34:54: 33000000 INFO @ Fri, 05 Jul 2019 13:34:56: 34000000 INFO @ Fri, 05 Jul 2019 13:35:01: 38000000 INFO @ Fri, 05 Jul 2019 13:35:04: 35000000 INFO @ Fri, 05 Jul 2019 13:35:05: 34000000 INFO @ Fri, 05 Jul 2019 13:35:09: 39000000 INFO @ Fri, 05 Jul 2019 13:35:11: 36000000 INFO @ Fri, 05 Jul 2019 13:35:16: 35000000 INFO @ Fri, 05 Jul 2019 13:35:17: 40000000 INFO @ Fri, 05 Jul 2019 13:35:19: 37000000 INFO @ Fri, 05 Jul 2019 13:35:25: 41000000 INFO @ Fri, 05 Jul 2019 13:35:27: 38000000 INFO @ Fri, 05 Jul 2019 13:35:27: 36000000 INFO @ Fri, 05 Jul 2019 13:35:33: 42000000 INFO @ Fri, 05 Jul 2019 13:35:34: 39000000 INFO @ Fri, 05 Jul 2019 13:35:38: 37000000 INFO @ Fri, 05 Jul 2019 13:35:41: 43000000 INFO @ Fri, 05 Jul 2019 13:35:42: 40000000 INFO @ Fri, 05 Jul 2019 13:35:49: 38000000 INFO @ Fri, 05 Jul 2019 13:35:49: 44000000 INFO @ Fri, 05 Jul 2019 13:35:50: 41000000 INFO @ Fri, 05 Jul 2019 13:35:57: 45000000 INFO @ Fri, 05 Jul 2019 13:35:58: 42000000 INFO @ Fri, 05 Jul 2019 13:35:59: 39000000 INFO @ Fri, 05 Jul 2019 13:36:05: 46000000 INFO @ Fri, 05 Jul 2019 13:36:06: 43000000 INFO @ Fri, 05 Jul 2019 13:36:10: 40000000 INFO @ Fri, 05 Jul 2019 13:36:13: 47000000 INFO @ Fri, 05 Jul 2019 13:36:14: 44000000 INFO @ Fri, 05 Jul 2019 13:36:20: 41000000 INFO @ Fri, 05 Jul 2019 13:36:20: 48000000 INFO @ Fri, 05 Jul 2019 13:36:21: 45000000 INFO @ Fri, 05 Jul 2019 13:36:28: 49000000 INFO @ Fri, 05 Jul 2019 13:36:29: 46000000 INFO @ Fri, 05 Jul 2019 13:36:31: 42000000 INFO @ Fri, 05 Jul 2019 13:36:36: 50000000 INFO @ Fri, 05 Jul 2019 13:36:37: 47000000 INFO @ Fri, 05 Jul 2019 13:36:41: 43000000 INFO @ Fri, 05 Jul 2019 13:36:44: 51000000 INFO @ Fri, 05 Jul 2019 13:36:45: 48000000 INFO @ Fri, 05 Jul 2019 13:36:52: 52000000 INFO @ Fri, 05 Jul 2019 13:36:52: 44000000 INFO @ Fri, 05 Jul 2019 13:36:53: 49000000 INFO @ Fri, 05 Jul 2019 13:37:00: 53000000 INFO @ Fri, 05 Jul 2019 13:37:00: 50000000 INFO @ Fri, 05 Jul 2019 13:37:02: 45000000 INFO @ Fri, 05 Jul 2019 13:37:07: 54000000 INFO @ Fri, 05 Jul 2019 13:37:08: 51000000 INFO @ Fri, 05 Jul 2019 13:37:13: 46000000 INFO @ Fri, 05 Jul 2019 13:37:16: 55000000 INFO @ Fri, 05 Jul 2019 13:37:16: 52000000 INFO @ Fri, 05 Jul 2019 13:37:23: 56000000 INFO @ Fri, 05 Jul 2019 13:37:24: 47000000 INFO @ Fri, 05 Jul 2019 13:37:24: 53000000 INFO @ Fri, 05 Jul 2019 13:37:31: 57000000 INFO @ Fri, 05 Jul 2019 13:37:32: 54000000 INFO @ Fri, 05 Jul 2019 13:37:34: 48000000 INFO @ Fri, 05 Jul 2019 13:37:39: 58000000 INFO @ Fri, 05 Jul 2019 13:37:40: 55000000 INFO @ Fri, 05 Jul 2019 13:37:45: 49000000 INFO @ Fri, 05 Jul 2019 13:37:47: 59000000 INFO @ Fri, 05 Jul 2019 13:37:48: 56000000 INFO @ Fri, 05 Jul 2019 13:37:55: 60000000 INFO @ Fri, 05 Jul 2019 13:37:55: 50000000 INFO @ Fri, 05 Jul 2019 13:37:56: 57000000 INFO @ Fri, 05 Jul 2019 13:38:03: 61000000 INFO @ Fri, 05 Jul 2019 13:38:03: 58000000 INFO @ Fri, 05 Jul 2019 13:38:06: 51000000 INFO @ Fri, 05 Jul 2019 13:38:11: 62000000 INFO @ Fri, 05 Jul 2019 13:38:11: 59000000 INFO @ Fri, 05 Jul 2019 13:38:16: 52000000 INFO @ Fri, 05 Jul 2019 13:38:19: 63000000 INFO @ Fri, 05 Jul 2019 13:38:19: 60000000 INFO @ Fri, 05 Jul 2019 13:38:27: 64000000 INFO @ Fri, 05 Jul 2019 13:38:27: 53000000 INFO @ Fri, 05 Jul 2019 13:38:27: 61000000 INFO @ Fri, 05 Jul 2019 13:38:34: 65000000 INFO @ Fri, 05 Jul 2019 13:38:35: 62000000 INFO @ Fri, 05 Jul 2019 13:38:37: 54000000 INFO @ Fri, 05 Jul 2019 13:38:42: 66000000 INFO @ Fri, 05 Jul 2019 13:38:43: 63000000 INFO @ Fri, 05 Jul 2019 13:38:48: 55000000 INFO @ Fri, 05 Jul 2019 13:38:50: 67000000 INFO @ Fri, 05 Jul 2019 13:38:50: 64000000 INFO @ Fri, 05 Jul 2019 13:38:58: 68000000 INFO @ Fri, 05 Jul 2019 13:38:58: 65000000 INFO @ Fri, 05 Jul 2019 13:38:58: 56000000 INFO @ Fri, 05 Jul 2019 13:39:06: 69000000 INFO @ Fri, 05 Jul 2019 13:39:06: 66000000 INFO @ Fri, 05 Jul 2019 13:39:09: 57000000 INFO @ Fri, 05 Jul 2019 13:39:13: 70000000 INFO @ Fri, 05 Jul 2019 13:39:14: 67000000 INFO @ Fri, 05 Jul 2019 13:39:20: 58000000 INFO @ Fri, 05 Jul 2019 13:39:21: 71000000 INFO @ Fri, 05 Jul 2019 13:39:22: 68000000 INFO @ Fri, 05 Jul 2019 13:39:28: 72000000 INFO @ Fri, 05 Jul 2019 13:39:30: 69000000 INFO @ Fri, 05 Jul 2019 13:39:30: 59000000 INFO @ Fri, 05 Jul 2019 13:39:36: 73000000 INFO @ Fri, 05 Jul 2019 13:39:37: 70000000 INFO @ Fri, 05 Jul 2019 13:39:41: 60000000 INFO @ Fri, 05 Jul 2019 13:39:44: 74000000 INFO @ Fri, 05 Jul 2019 13:39:45: 71000000 INFO @ Fri, 05 Jul 2019 13:39:47: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 13:39:47: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 13:39:47: #1 total tags in treatment: 74326738 INFO @ Fri, 05 Jul 2019 13:39:47: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 13:39:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 13:39:49: #1 tags after filtering in treatment: 74326628 INFO @ Fri, 05 Jul 2019 13:39:49: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 13:39:49: #1 finished! INFO @ Fri, 05 Jul 2019 13:39:49: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 13:39:49: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 13:39:51: 61000000 INFO @ Fri, 05 Jul 2019 13:39:52: 72000000 INFO @ Fri, 05 Jul 2019 13:40:00: 73000000 INFO @ Fri, 05 Jul 2019 13:40:02: 62000000 INFO @ Fri, 05 Jul 2019 13:40:04: #2 number of paired peaks: 125428 INFO @ Fri, 05 Jul 2019 13:40:04: start model_add_line... INFO @ Fri, 05 Jul 2019 13:40:05: start X-correlation... INFO @ Fri, 05 Jul 2019 13:40:05: end of X-cor INFO @ Fri, 05 Jul 2019 13:40:05: #2 finished! INFO @ Fri, 05 Jul 2019 13:40:05: #2 predicted fragment length is 125 bps INFO @ Fri, 05 Jul 2019 13:40:05: #2 alternative fragment length(s) may be 2,125 bps INFO @ Fri, 05 Jul 2019 13:40:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.10_model.r INFO @ Fri, 05 Jul 2019 13:40:05: #3 Call peaks... INFO @ Fri, 05 Jul 2019 13:40:05: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 13:40:07: 74000000 INFO @ Fri, 05 Jul 2019 13:40:11: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 13:40:11: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 13:40:11: #1 total tags in treatment: 74326738 INFO @ Fri, 05 Jul 2019 13:40:11: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 13:40:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 13:40:12: 63000000 INFO @ Fri, 05 Jul 2019 13:40:12: #1 tags after filtering in treatment: 74326628 INFO @ Fri, 05 Jul 2019 13:40:12: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 13:40:12: #1 finished! INFO @ Fri, 05 Jul 2019 13:40:12: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 13:40:12: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 13:40:23: 64000000 INFO @ Fri, 05 Jul 2019 13:40:27: #2 number of paired peaks: 125428 INFO @ Fri, 05 Jul 2019 13:40:27: start model_add_line... INFO @ Fri, 05 Jul 2019 13:40:29: start X-correlation... INFO @ Fri, 05 Jul 2019 13:40:29: end of X-cor INFO @ Fri, 05 Jul 2019 13:40:29: #2 finished! INFO @ Fri, 05 Jul 2019 13:40:29: #2 predicted fragment length is 125 bps INFO @ Fri, 05 Jul 2019 13:40:29: #2 alternative fragment length(s) may be 2,125 bps INFO @ Fri, 05 Jul 2019 13:40:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.05_model.r INFO @ Fri, 05 Jul 2019 13:40:29: #3 Call peaks... INFO @ Fri, 05 Jul 2019 13:40:29: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 13:40:33: 65000000 INFO @ Fri, 05 Jul 2019 13:40:45: 66000000 INFO @ Fri, 05 Jul 2019 13:40:56: 67000000 INFO @ Fri, 05 Jul 2019 13:41:07: 68000000 INFO @ Fri, 05 Jul 2019 13:41:19: 69000000 INFO @ Fri, 05 Jul 2019 13:41:30: 70000000 INFO @ Fri, 05 Jul 2019 13:41:41: 71000000 INFO @ Fri, 05 Jul 2019 13:41:52: 72000000 INFO @ Fri, 05 Jul 2019 13:42:03: 73000000 INFO @ Fri, 05 Jul 2019 13:42:14: 74000000 INFO @ Fri, 05 Jul 2019 13:42:18: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 13:42:18: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 13:42:18: #1 total tags in treatment: 74326738 INFO @ Fri, 05 Jul 2019 13:42:18: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 13:42:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 13:42:20: #1 tags after filtering in treatment: 74326628 INFO @ Fri, 05 Jul 2019 13:42:20: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 13:42:20: #1 finished! INFO @ Fri, 05 Jul 2019 13:42:20: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 13:42:20: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 13:42:35: #2 number of paired peaks: 125428 INFO @ Fri, 05 Jul 2019 13:42:35: start model_add_line... INFO @ Fri, 05 Jul 2019 13:42:36: start X-correlation... INFO @ Fri, 05 Jul 2019 13:42:36: end of X-cor INFO @ Fri, 05 Jul 2019 13:42:36: #2 finished! INFO @ Fri, 05 Jul 2019 13:42:36: #2 predicted fragment length is 125 bps INFO @ Fri, 05 Jul 2019 13:42:36: #2 alternative fragment length(s) may be 2,125 bps INFO @ Fri, 05 Jul 2019 13:42:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.20_model.r INFO @ Fri, 05 Jul 2019 13:42:36: #3 Call peaks... INFO @ Fri, 05 Jul 2019 13:42:36: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 13:43:55: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 13:44:15: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 13:45:57: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.10_peaks.xls INFO @ Fri, 05 Jul 2019 13:45:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 13:45:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.10_summits.bed INFO @ Fri, 05 Jul 2019 13:45:58: Done! pass1 - making usageList (105 chroms): 18 millis pass2 - checking and writing primary data (50589 records, 4 fields): 72 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 13:46:14: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.05_peaks.xls INFO @ Fri, 05 Jul 2019 13:46:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 13:46:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.05_summits.bed INFO @ Fri, 05 Jul 2019 13:46:17: Done! pass1 - making usageList (187 chroms): 25 millis pass2 - checking and writing primary data (129709 records, 4 fields): 157 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 13:46:26: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 13:48:26: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.20_peaks.xls INFO @ Fri, 05 Jul 2019 13:48:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 13:48:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX102037/ERX102037.20_summits.bed INFO @ Fri, 05 Jul 2019 13:48:26: Done! pass1 - making usageList (42 chroms): 4 millis pass2 - checking and writing primary data (7971 records, 4 fields): 20 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。