Job ID = 2002122 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-05T00:48:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 81,261,887 reads read : 81,261,887 reads written : 81,261,887 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:43:44 81261887 reads; of these: 81261887 (100.00%) were unpaired; of these: 5973542 (7.35%) aligned 0 times 54995933 (67.68%) aligned exactly 1 time 20292412 (24.97%) aligned >1 times 92.65% overall alignment rate Time searching: 00:43:47 Overall time: 00:43:47 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 6128506 / 75288345 = 0.0814 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 11:59:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 11:59:10: #1 read tag files... INFO @ Fri, 05 Jul 2019 11:59:10: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 11:59:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 11:59:11: #1 read tag files... INFO @ Fri, 05 Jul 2019 11:59:11: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 11:59:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 11:59:12: #1 read tag files... INFO @ Fri, 05 Jul 2019 11:59:12: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 11:59:20: 1000000 INFO @ Fri, 05 Jul 2019 11:59:20: 1000000 INFO @ Fri, 05 Jul 2019 11:59:21: 1000000 INFO @ Fri, 05 Jul 2019 11:59:32: 2000000 INFO @ Fri, 05 Jul 2019 11:59:33: 2000000 INFO @ Fri, 05 Jul 2019 11:59:34: 2000000 INFO @ Fri, 05 Jul 2019 11:59:44: 3000000 INFO @ Fri, 05 Jul 2019 11:59:46: 3000000 INFO @ Fri, 05 Jul 2019 11:59:47: 3000000 INFO @ Fri, 05 Jul 2019 11:59:55: 4000000 INFO @ Fri, 05 Jul 2019 12:00:00: 4000000 INFO @ Fri, 05 Jul 2019 12:00:01: 4000000 INFO @ Fri, 05 Jul 2019 12:00:07: 5000000 INFO @ Fri, 05 Jul 2019 12:00:14: 5000000 INFO @ Fri, 05 Jul 2019 12:00:15: 5000000 INFO @ Fri, 05 Jul 2019 12:00:19: 6000000 INFO @ Fri, 05 Jul 2019 12:00:27: 6000000 INFO @ Fri, 05 Jul 2019 12:00:28: 6000000 INFO @ Fri, 05 Jul 2019 12:00:31: 7000000 INFO @ Fri, 05 Jul 2019 12:00:39: 7000000 INFO @ Fri, 05 Jul 2019 12:00:41: 7000000 INFO @ Fri, 05 Jul 2019 12:00:42: 8000000 INFO @ Fri, 05 Jul 2019 12:00:52: 8000000 INFO @ Fri, 05 Jul 2019 12:00:54: 8000000 INFO @ Fri, 05 Jul 2019 12:00:54: 9000000 INFO @ Fri, 05 Jul 2019 12:01:04: 9000000 INFO @ Fri, 05 Jul 2019 12:01:06: 10000000 INFO @ Fri, 05 Jul 2019 12:01:06: 9000000 INFO @ Fri, 05 Jul 2019 12:01:14: 10000000 INFO @ Fri, 05 Jul 2019 12:01:15: 10000000 INFO @ Fri, 05 Jul 2019 12:01:16: 11000000 INFO @ Fri, 05 Jul 2019 12:01:23: 11000000 INFO @ Fri, 05 Jul 2019 12:01:24: 11000000 INFO @ Fri, 05 Jul 2019 12:01:27: 12000000 INFO @ Fri, 05 Jul 2019 12:01:32: 12000000 INFO @ Fri, 05 Jul 2019 12:01:33: 12000000 INFO @ Fri, 05 Jul 2019 12:01:36: 13000000 INFO @ Fri, 05 Jul 2019 12:01:41: 13000000 INFO @ Fri, 05 Jul 2019 12:01:41: 13000000 INFO @ Fri, 05 Jul 2019 12:01:47: 14000000 INFO @ Fri, 05 Jul 2019 12:01:50: 14000000 INFO @ Fri, 05 Jul 2019 12:01:51: 14000000 INFO @ Fri, 05 Jul 2019 12:01:57: 15000000 INFO @ Fri, 05 Jul 2019 12:01:59: 15000000 INFO @ Fri, 05 Jul 2019 12:02:00: 15000000 INFO @ Fri, 05 Jul 2019 12:02:08: 16000000 INFO @ Fri, 05 Jul 2019 12:02:10: 16000000 INFO @ Fri, 05 Jul 2019 12:02:11: 16000000 INFO @ Fri, 05 Jul 2019 12:02:18: 17000000 INFO @ Fri, 05 Jul 2019 12:02:19: 17000000 INFO @ Fri, 05 Jul 2019 12:02:20: 17000000 INFO @ Fri, 05 Jul 2019 12:02:28: 18000000 INFO @ Fri, 05 Jul 2019 12:02:29: 18000000 INFO @ Fri, 05 Jul 2019 12:02:29: 18000000 INFO @ Fri, 05 Jul 2019 12:02:38: 19000000 INFO @ Fri, 05 Jul 2019 12:02:38: 19000000 INFO @ Fri, 05 Jul 2019 12:02:40: 19000000 INFO @ Fri, 05 Jul 2019 12:02:47: 20000000 INFO @ Fri, 05 Jul 2019 12:02:48: 20000000 INFO @ Fri, 05 Jul 2019 12:02:51: 20000000 INFO @ Fri, 05 Jul 2019 12:02:56: 21000000 INFO @ Fri, 05 Jul 2019 12:02:57: 21000000 INFO @ Fri, 05 Jul 2019 12:03:01: 21000000 INFO @ Fri, 05 Jul 2019 12:03:06: 22000000 INFO @ Fri, 05 Jul 2019 12:03:06: 22000000 INFO @ Fri, 05 Jul 2019 12:03:12: 22000000 INFO @ Fri, 05 Jul 2019 12:03:15: 23000000 INFO @ Fri, 05 Jul 2019 12:03:16: 23000000 INFO @ Fri, 05 Jul 2019 12:03:23: 23000000 INFO @ Fri, 05 Jul 2019 12:03:25: 24000000 INFO @ Fri, 05 Jul 2019 12:03:25: 24000000 INFO @ Fri, 05 Jul 2019 12:03:34: 24000000 INFO @ Fri, 05 Jul 2019 12:03:34: 25000000 INFO @ Fri, 05 Jul 2019 12:03:35: 25000000 INFO @ Fri, 05 Jul 2019 12:03:43: 26000000 INFO @ Fri, 05 Jul 2019 12:03:44: 26000000 INFO @ Fri, 05 Jul 2019 12:03:45: 25000000 INFO @ Fri, 05 Jul 2019 12:03:52: 27000000 INFO @ Fri, 05 Jul 2019 12:03:53: 27000000 INFO @ Fri, 05 Jul 2019 12:03:56: 26000000 INFO @ Fri, 05 Jul 2019 12:04:02: 28000000 INFO @ Fri, 05 Jul 2019 12:04:03: 28000000 INFO @ Fri, 05 Jul 2019 12:04:06: 27000000 INFO @ Fri, 05 Jul 2019 12:04:11: 29000000 INFO @ Fri, 05 Jul 2019 12:04:12: 29000000 INFO @ Fri, 05 Jul 2019 12:04:17: 28000000 INFO @ Fri, 05 Jul 2019 12:04:20: 30000000 INFO @ Fri, 05 Jul 2019 12:04:21: 30000000 INFO @ Fri, 05 Jul 2019 12:04:28: 29000000 INFO @ Fri, 05 Jul 2019 12:04:31: 31000000 INFO @ Fri, 05 Jul 2019 12:04:31: 31000000 INFO @ Fri, 05 Jul 2019 12:04:38: 30000000 INFO @ Fri, 05 Jul 2019 12:04:40: 32000000 INFO @ Fri, 05 Jul 2019 12:04:40: 32000000 INFO @ Fri, 05 Jul 2019 12:04:49: 31000000 INFO @ Fri, 05 Jul 2019 12:04:50: 33000000 INFO @ Fri, 05 Jul 2019 12:04:50: 33000000 INFO @ Fri, 05 Jul 2019 12:05:00: 34000000 INFO @ Fri, 05 Jul 2019 12:05:00: 34000000 INFO @ Fri, 05 Jul 2019 12:05:00: 32000000 INFO @ Fri, 05 Jul 2019 12:05:09: 35000000 INFO @ Fri, 05 Jul 2019 12:05:09: 35000000 INFO @ Fri, 05 Jul 2019 12:05:10: 33000000 INFO @ Fri, 05 Jul 2019 12:05:19: 36000000 INFO @ Fri, 05 Jul 2019 12:05:19: 36000000 INFO @ Fri, 05 Jul 2019 12:05:21: 34000000 INFO @ Fri, 05 Jul 2019 12:05:29: 37000000 INFO @ Fri, 05 Jul 2019 12:05:29: 37000000 INFO @ Fri, 05 Jul 2019 12:05:31: 35000000 INFO @ Fri, 05 Jul 2019 12:05:38: 38000000 INFO @ Fri, 05 Jul 2019 12:05:38: 38000000 INFO @ Fri, 05 Jul 2019 12:05:42: 36000000 INFO @ Fri, 05 Jul 2019 12:05:47: 39000000 INFO @ Fri, 05 Jul 2019 12:05:47: 39000000 INFO @ Fri, 05 Jul 2019 12:05:52: 37000000 INFO @ Fri, 05 Jul 2019 12:05:57: 40000000 INFO @ Fri, 05 Jul 2019 12:05:57: 40000000 INFO @ Fri, 05 Jul 2019 12:06:03: 38000000 INFO @ Fri, 05 Jul 2019 12:06:06: 41000000 INFO @ Fri, 05 Jul 2019 12:06:06: 41000000 INFO @ Fri, 05 Jul 2019 12:06:13: 39000000 INFO @ Fri, 05 Jul 2019 12:06:16: 42000000 INFO @ Fri, 05 Jul 2019 12:06:16: 42000000 INFO @ Fri, 05 Jul 2019 12:06:23: 40000000 INFO @ Fri, 05 Jul 2019 12:06:26: 43000000 INFO @ Fri, 05 Jul 2019 12:06:26: 43000000 INFO @ Fri, 05 Jul 2019 12:06:34: 41000000 INFO @ Fri, 05 Jul 2019 12:06:35: 44000000 INFO @ Fri, 05 Jul 2019 12:06:35: 44000000 INFO @ Fri, 05 Jul 2019 12:06:44: 42000000 INFO @ Fri, 05 Jul 2019 12:06:45: 45000000 INFO @ Fri, 05 Jul 2019 12:06:45: 45000000 INFO @ Fri, 05 Jul 2019 12:06:55: 46000000 INFO @ Fri, 05 Jul 2019 12:06:55: 46000000 INFO @ Fri, 05 Jul 2019 12:06:55: 43000000 INFO @ Fri, 05 Jul 2019 12:07:04: 47000000 INFO @ Fri, 05 Jul 2019 12:07:05: 47000000 INFO @ Fri, 05 Jul 2019 12:07:07: 44000000 INFO @ Fri, 05 Jul 2019 12:07:13: 48000000 INFO @ Fri, 05 Jul 2019 12:07:16: 48000000 INFO @ Fri, 05 Jul 2019 12:07:18: 45000000 INFO @ Fri, 05 Jul 2019 12:07:23: 49000000 INFO @ Fri, 05 Jul 2019 12:07:25: 49000000 INFO @ Fri, 05 Jul 2019 12:07:28: 46000000 INFO @ Fri, 05 Jul 2019 12:07:32: 50000000 INFO @ Fri, 05 Jul 2019 12:07:34: 50000000 INFO @ Fri, 05 Jul 2019 12:07:39: 47000000 INFO @ Fri, 05 Jul 2019 12:07:40: 51000000 INFO @ Fri, 05 Jul 2019 12:07:43: 51000000 INFO @ Fri, 05 Jul 2019 12:07:49: 48000000 INFO @ Fri, 05 Jul 2019 12:07:49: 52000000 INFO @ Fri, 05 Jul 2019 12:07:52: 52000000 INFO @ Fri, 05 Jul 2019 12:07:59: 53000000 INFO @ Fri, 05 Jul 2019 12:08:00: 49000000 INFO @ Fri, 05 Jul 2019 12:08:01: 53000000 INFO @ Fri, 05 Jul 2019 12:08:08: 54000000 INFO @ Fri, 05 Jul 2019 12:08:10: 54000000 INFO @ Fri, 05 Jul 2019 12:08:10: 50000000 INFO @ Fri, 05 Jul 2019 12:08:16: 55000000 INFO @ Fri, 05 Jul 2019 12:08:19: 55000000 INFO @ Fri, 05 Jul 2019 12:08:20: 51000000 INFO @ Fri, 05 Jul 2019 12:08:25: 56000000 INFO @ Fri, 05 Jul 2019 12:08:28: 56000000 INFO @ Fri, 05 Jul 2019 12:08:30: 52000000 INFO @ Fri, 05 Jul 2019 12:08:34: 57000000 INFO @ Fri, 05 Jul 2019 12:08:36: 57000000 INFO @ Fri, 05 Jul 2019 12:08:40: 53000000 INFO @ Fri, 05 Jul 2019 12:08:43: 58000000 INFO @ Fri, 05 Jul 2019 12:08:45: 58000000 INFO @ Fri, 05 Jul 2019 12:08:50: 54000000 INFO @ Fri, 05 Jul 2019 12:08:51: 59000000 INFO @ Fri, 05 Jul 2019 12:08:54: 59000000 INFO @ Fri, 05 Jul 2019 12:09:00: 55000000 INFO @ Fri, 05 Jul 2019 12:09:00: 60000000 INFO @ Fri, 05 Jul 2019 12:09:03: 60000000 INFO @ Fri, 05 Jul 2019 12:09:09: 61000000 INFO @ Fri, 05 Jul 2019 12:09:10: 56000000 INFO @ Fri, 05 Jul 2019 12:09:12: 61000000 INFO @ Fri, 05 Jul 2019 12:09:18: 62000000 INFO @ Fri, 05 Jul 2019 12:09:20: 57000000 INFO @ Fri, 05 Jul 2019 12:09:21: 62000000 INFO @ Fri, 05 Jul 2019 12:09:27: 63000000 INFO @ Fri, 05 Jul 2019 12:09:30: 63000000 INFO @ Fri, 05 Jul 2019 12:09:30: 58000000 INFO @ Fri, 05 Jul 2019 12:09:36: 64000000 INFO @ Fri, 05 Jul 2019 12:09:39: 64000000 INFO @ Fri, 05 Jul 2019 12:09:40: 59000000 INFO @ Fri, 05 Jul 2019 12:09:45: 65000000 INFO @ Fri, 05 Jul 2019 12:09:48: 65000000 INFO @ Fri, 05 Jul 2019 12:09:51: 60000000 INFO @ Fri, 05 Jul 2019 12:09:54: 66000000 INFO @ Fri, 05 Jul 2019 12:09:57: 66000000 INFO @ Fri, 05 Jul 2019 12:10:01: 61000000 INFO @ Fri, 05 Jul 2019 12:10:03: 67000000 INFO @ Fri, 05 Jul 2019 12:10:06: 67000000 INFO @ Fri, 05 Jul 2019 12:10:11: 62000000 INFO @ Fri, 05 Jul 2019 12:10:12: 68000000 INFO @ Fri, 05 Jul 2019 12:10:15: 68000000 INFO @ Fri, 05 Jul 2019 12:10:21: 63000000 INFO @ Fri, 05 Jul 2019 12:10:22: 69000000 INFO @ Fri, 05 Jul 2019 12:10:24: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 12:10:24: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 12:10:24: #1 total tags in treatment: 69159839 INFO @ Fri, 05 Jul 2019 12:10:24: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 12:10:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 12:10:24: 69000000 INFO @ Fri, 05 Jul 2019 12:10:26: #1 tags after filtering in treatment: 69159767 INFO @ Fri, 05 Jul 2019 12:10:26: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 12:10:26: #1 finished! INFO @ Fri, 05 Jul 2019 12:10:26: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 12:10:26: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 12:10:27: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 12:10:27: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 12:10:27: #1 total tags in treatment: 69159839 INFO @ Fri, 05 Jul 2019 12:10:27: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 12:10:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 12:10:28: #1 tags after filtering in treatment: 69159767 INFO @ Fri, 05 Jul 2019 12:10:28: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 12:10:28: #1 finished! INFO @ Fri, 05 Jul 2019 12:10:28: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 12:10:28: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 12:10:31: 64000000 INFO @ Fri, 05 Jul 2019 12:10:33: #2 number of paired peaks: 10838 INFO @ Fri, 05 Jul 2019 12:10:33: start model_add_line... INFO @ Fri, 05 Jul 2019 12:10:34: start X-correlation... INFO @ Fri, 05 Jul 2019 12:10:34: end of X-cor INFO @ Fri, 05 Jul 2019 12:10:34: #2 finished! INFO @ Fri, 05 Jul 2019 12:10:34: #2 predicted fragment length is 122 bps INFO @ Fri, 05 Jul 2019 12:10:34: #2 alternative fragment length(s) may be 3,122,487 bps INFO @ Fri, 05 Jul 2019 12:10:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.10_model.r INFO @ Fri, 05 Jul 2019 12:10:34: #3 Call peaks... INFO @ Fri, 05 Jul 2019 12:10:34: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 12:10:36: #2 number of paired peaks: 10838 INFO @ Fri, 05 Jul 2019 12:10:36: start model_add_line... INFO @ Fri, 05 Jul 2019 12:10:37: start X-correlation... INFO @ Fri, 05 Jul 2019 12:10:37: end of X-cor INFO @ Fri, 05 Jul 2019 12:10:37: #2 finished! INFO @ Fri, 05 Jul 2019 12:10:37: #2 predicted fragment length is 122 bps INFO @ Fri, 05 Jul 2019 12:10:37: #2 alternative fragment length(s) may be 3,122,487 bps INFO @ Fri, 05 Jul 2019 12:10:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.20_model.r INFO @ Fri, 05 Jul 2019 12:10:37: #3 Call peaks... INFO @ Fri, 05 Jul 2019 12:10:37: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 12:10:41: 65000000 INFO @ Fri, 05 Jul 2019 12:10:50: 66000000 INFO @ Fri, 05 Jul 2019 12:11:00: 67000000 INFO @ Fri, 05 Jul 2019 12:11:10: 68000000 INFO @ Fri, 05 Jul 2019 12:11:20: 69000000 INFO @ Fri, 05 Jul 2019 12:11:23: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 12:11:23: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 12:11:23: #1 total tags in treatment: 69159839 INFO @ Fri, 05 Jul 2019 12:11:23: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 12:11:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 12:11:24: #1 tags after filtering in treatment: 69159767 INFO @ Fri, 05 Jul 2019 12:11:24: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 12:11:24: #1 finished! INFO @ Fri, 05 Jul 2019 12:11:24: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 12:11:24: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 12:11:32: #2 number of paired peaks: 10838 INFO @ Fri, 05 Jul 2019 12:11:32: start model_add_line... INFO @ Fri, 05 Jul 2019 12:11:33: start X-correlation... INFO @ Fri, 05 Jul 2019 12:11:33: end of X-cor INFO @ Fri, 05 Jul 2019 12:11:33: #2 finished! INFO @ Fri, 05 Jul 2019 12:11:33: #2 predicted fragment length is 122 bps INFO @ Fri, 05 Jul 2019 12:11:33: #2 alternative fragment length(s) may be 3,122,487 bps INFO @ Fri, 05 Jul 2019 12:11:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.05_model.r INFO @ Fri, 05 Jul 2019 12:11:33: #3 Call peaks... INFO @ Fri, 05 Jul 2019 12:11:33: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 12:14:11: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 12:14:14: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 12:15:07: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 12:16:04: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.10_peaks.xls INFO @ Fri, 05 Jul 2019 12:16:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 12:16:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.10_summits.bed INFO @ Fri, 05 Jul 2019 12:16:04: Done! pass1 - making usageList (51 chroms): 2 millis pass2 - checking and writing primary data (1278 records, 4 fields): 28 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 12:16:08: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.20_peaks.xls INFO @ Fri, 05 Jul 2019 12:16:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 12:16:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.20_summits.bed INFO @ Fri, 05 Jul 2019 12:16:08: Done! pass1 - making usageList (38 chroms): 1 millis pass2 - checking and writing primary data (366 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 12:17:00: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.05_peaks.xls INFO @ Fri, 05 Jul 2019 12:17:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 12:17:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX102024/ERX102024.05_summits.bed INFO @ Fri, 05 Jul 2019 12:17:00: Done! pass1 - making usageList (99 chroms): 1 millis pass2 - checking and writing primary data (4693 records, 4 fields): 12 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。