Job ID = 2001676 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T23:08:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:17:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:17:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:26:08 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:33:13 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:33:13 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:33:13 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 82,882,847 reads read : 82,882,847 reads written : 82,882,847 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:00:58 82882847 reads; of these: 82882847 (100.00%) were unpaired; of these: 1114774 (1.34%) aligned 0 times 72801832 (87.84%) aligned exactly 1 time 8966241 (10.82%) aligned >1 times 98.66% overall alignment rate Time searching: 01:00:59 Overall time: 01:00:59 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 16078608 / 81768073 = 0.1966 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 10:18:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:18:56: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:18:56: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:18:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:18:56: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:18:56: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:18:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:18:57: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:18:57: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:19:05: 1000000 INFO @ Fri, 05 Jul 2019 10:19:05: 1000000 INFO @ Fri, 05 Jul 2019 10:19:05: 1000000 INFO @ Fri, 05 Jul 2019 10:19:12: 2000000 INFO @ Fri, 05 Jul 2019 10:19:13: 2000000 INFO @ Fri, 05 Jul 2019 10:19:13: 2000000 INFO @ Fri, 05 Jul 2019 10:19:19: 3000000 INFO @ Fri, 05 Jul 2019 10:19:21: 3000000 INFO @ Fri, 05 Jul 2019 10:19:21: 3000000 INFO @ Fri, 05 Jul 2019 10:19:26: 4000000 INFO @ Fri, 05 Jul 2019 10:19:29: 4000000 INFO @ Fri, 05 Jul 2019 10:19:29: 4000000 INFO @ Fri, 05 Jul 2019 10:19:33: 5000000 INFO @ Fri, 05 Jul 2019 10:19:37: 5000000 INFO @ Fri, 05 Jul 2019 10:19:37: 5000000 INFO @ Fri, 05 Jul 2019 10:19:40: 6000000 INFO @ Fri, 05 Jul 2019 10:19:44: 6000000 INFO @ Fri, 05 Jul 2019 10:19:45: 6000000 INFO @ Fri, 05 Jul 2019 10:19:47: 7000000 INFO @ Fri, 05 Jul 2019 10:19:52: 7000000 INFO @ Fri, 05 Jul 2019 10:19:53: 7000000 INFO @ Fri, 05 Jul 2019 10:19:54: 8000000 INFO @ Fri, 05 Jul 2019 10:20:00: 8000000 INFO @ Fri, 05 Jul 2019 10:20:01: 8000000 INFO @ Fri, 05 Jul 2019 10:20:01: 9000000 INFO @ Fri, 05 Jul 2019 10:20:07: 9000000 INFO @ Fri, 05 Jul 2019 10:20:08: 10000000 INFO @ Fri, 05 Jul 2019 10:20:09: 9000000 INFO @ Fri, 05 Jul 2019 10:20:15: 11000000 INFO @ Fri, 05 Jul 2019 10:20:15: 10000000 INFO @ Fri, 05 Jul 2019 10:20:17: 10000000 INFO @ Fri, 05 Jul 2019 10:20:22: 12000000 INFO @ Fri, 05 Jul 2019 10:20:23: 11000000 INFO @ Fri, 05 Jul 2019 10:20:25: 11000000 INFO @ Fri, 05 Jul 2019 10:20:29: 13000000 INFO @ Fri, 05 Jul 2019 10:20:31: 12000000 INFO @ Fri, 05 Jul 2019 10:20:33: 12000000 INFO @ Fri, 05 Jul 2019 10:20:36: 14000000 INFO @ Fri, 05 Jul 2019 10:20:38: 13000000 INFO @ Fri, 05 Jul 2019 10:20:41: 13000000 INFO @ Fri, 05 Jul 2019 10:20:43: 15000000 INFO @ Fri, 05 Jul 2019 10:20:46: 14000000 INFO @ Fri, 05 Jul 2019 10:20:49: 14000000 INFO @ Fri, 05 Jul 2019 10:20:50: 16000000 INFO @ Fri, 05 Jul 2019 10:20:54: 15000000 INFO @ Fri, 05 Jul 2019 10:20:57: 15000000 INFO @ Fri, 05 Jul 2019 10:20:57: 17000000 INFO @ Fri, 05 Jul 2019 10:21:02: 16000000 INFO @ Fri, 05 Jul 2019 10:21:04: 18000000 INFO @ Fri, 05 Jul 2019 10:21:04: 16000000 INFO @ Fri, 05 Jul 2019 10:21:09: 17000000 INFO @ Fri, 05 Jul 2019 10:21:11: 19000000 INFO @ Fri, 05 Jul 2019 10:21:12: 17000000 INFO @ Fri, 05 Jul 2019 10:21:17: 18000000 INFO @ Fri, 05 Jul 2019 10:21:18: 20000000 INFO @ Fri, 05 Jul 2019 10:21:20: 18000000 INFO @ Fri, 05 Jul 2019 10:21:25: 19000000 INFO @ Fri, 05 Jul 2019 10:21:25: 21000000 INFO @ Fri, 05 Jul 2019 10:21:27: 19000000 INFO @ Fri, 05 Jul 2019 10:21:32: 22000000 INFO @ Fri, 05 Jul 2019 10:21:33: 20000000 INFO @ Fri, 05 Jul 2019 10:21:35: 20000000 INFO @ Fri, 05 Jul 2019 10:21:39: 23000000 INFO @ Fri, 05 Jul 2019 10:21:40: 21000000 INFO @ Fri, 05 Jul 2019 10:21:43: 21000000 INFO @ Fri, 05 Jul 2019 10:21:47: 24000000 INFO @ Fri, 05 Jul 2019 10:21:48: 22000000 INFO @ Fri, 05 Jul 2019 10:21:51: 22000000 INFO @ Fri, 05 Jul 2019 10:21:54: 25000000 INFO @ Fri, 05 Jul 2019 10:21:56: 23000000 INFO @ Fri, 05 Jul 2019 10:21:59: 23000000 INFO @ Fri, 05 Jul 2019 10:22:01: 26000000 INFO @ Fri, 05 Jul 2019 10:22:04: 24000000 INFO @ Fri, 05 Jul 2019 10:22:07: 24000000 INFO @ Fri, 05 Jul 2019 10:22:08: 27000000 INFO @ Fri, 05 Jul 2019 10:22:12: 25000000 INFO @ Fri, 05 Jul 2019 10:22:15: 25000000 INFO @ Fri, 05 Jul 2019 10:22:15: 28000000 INFO @ Fri, 05 Jul 2019 10:22:19: 26000000 INFO @ Fri, 05 Jul 2019 10:22:22: 29000000 INFO @ Fri, 05 Jul 2019 10:22:22: 26000000 INFO @ Fri, 05 Jul 2019 10:22:27: 27000000 INFO @ Fri, 05 Jul 2019 10:22:29: 30000000 INFO @ Fri, 05 Jul 2019 10:22:30: 27000000 INFO @ Fri, 05 Jul 2019 10:22:35: 28000000 INFO @ Fri, 05 Jul 2019 10:22:36: 31000000 INFO @ Fri, 05 Jul 2019 10:22:38: 28000000 INFO @ Fri, 05 Jul 2019 10:22:42: 29000000 INFO @ Fri, 05 Jul 2019 10:22:43: 32000000 INFO @ Fri, 05 Jul 2019 10:22:45: 29000000 INFO @ Fri, 05 Jul 2019 10:22:50: 33000000 INFO @ Fri, 05 Jul 2019 10:22:50: 30000000 INFO @ Fri, 05 Jul 2019 10:22:53: 30000000 INFO @ Fri, 05 Jul 2019 10:22:57: 34000000 INFO @ Fri, 05 Jul 2019 10:22:58: 31000000 INFO @ Fri, 05 Jul 2019 10:23:01: 31000000 INFO @ Fri, 05 Jul 2019 10:23:04: 35000000 INFO @ Fri, 05 Jul 2019 10:23:06: 32000000 INFO @ Fri, 05 Jul 2019 10:23:09: 32000000 INFO @ Fri, 05 Jul 2019 10:23:11: 36000000 INFO @ Fri, 05 Jul 2019 10:23:14: 33000000 INFO @ Fri, 05 Jul 2019 10:23:16: 33000000 INFO @ Fri, 05 Jul 2019 10:23:18: 37000000 INFO @ Fri, 05 Jul 2019 10:23:21: 34000000 INFO @ Fri, 05 Jul 2019 10:23:24: 34000000 INFO @ Fri, 05 Jul 2019 10:23:25: 38000000 INFO @ Fri, 05 Jul 2019 10:23:29: 35000000 INFO @ Fri, 05 Jul 2019 10:23:32: 39000000 INFO @ Fri, 05 Jul 2019 10:23:32: 35000000 INFO @ Fri, 05 Jul 2019 10:23:37: 36000000 INFO @ Fri, 05 Jul 2019 10:23:39: 40000000 INFO @ Fri, 05 Jul 2019 10:23:40: 36000000 INFO @ Fri, 05 Jul 2019 10:23:45: 37000000 INFO @ Fri, 05 Jul 2019 10:23:45: 41000000 INFO @ Fri, 05 Jul 2019 10:23:47: 37000000 INFO @ Fri, 05 Jul 2019 10:23:52: 38000000 INFO @ Fri, 05 Jul 2019 10:23:52: 42000000 INFO @ Fri, 05 Jul 2019 10:23:55: 38000000 INFO @ Fri, 05 Jul 2019 10:23:59: 43000000 INFO @ Fri, 05 Jul 2019 10:24:00: 39000000 INFO @ Fri, 05 Jul 2019 10:24:03: 39000000 INFO @ Fri, 05 Jul 2019 10:24:06: 44000000 INFO @ Fri, 05 Jul 2019 10:24:08: 40000000 INFO @ Fri, 05 Jul 2019 10:24:10: 40000000 INFO @ Fri, 05 Jul 2019 10:24:13: 45000000 INFO @ Fri, 05 Jul 2019 10:24:15: 41000000 INFO @ Fri, 05 Jul 2019 10:24:18: 41000000 INFO @ Fri, 05 Jul 2019 10:24:20: 46000000 INFO @ Fri, 05 Jul 2019 10:24:23: 42000000 INFO @ Fri, 05 Jul 2019 10:24:26: 42000000 INFO @ Fri, 05 Jul 2019 10:24:27: 47000000 INFO @ Fri, 05 Jul 2019 10:24:31: 43000000 INFO @ Fri, 05 Jul 2019 10:24:33: 43000000 INFO @ Fri, 05 Jul 2019 10:24:34: 48000000 INFO @ Fri, 05 Jul 2019 10:24:38: 44000000 INFO @ Fri, 05 Jul 2019 10:24:41: 44000000 INFO @ Fri, 05 Jul 2019 10:24:41: 49000000 INFO @ Fri, 05 Jul 2019 10:24:46: 45000000 INFO @ Fri, 05 Jul 2019 10:24:48: 50000000 INFO @ Fri, 05 Jul 2019 10:24:48: 45000000 INFO @ Fri, 05 Jul 2019 10:24:54: 46000000 INFO @ Fri, 05 Jul 2019 10:24:55: 51000000 INFO @ Fri, 05 Jul 2019 10:24:56: 46000000 INFO @ Fri, 05 Jul 2019 10:25:02: 47000000 INFO @ Fri, 05 Jul 2019 10:25:02: 52000000 INFO @ Fri, 05 Jul 2019 10:25:04: 47000000 INFO @ Fri, 05 Jul 2019 10:25:09: 53000000 INFO @ Fri, 05 Jul 2019 10:25:10: 48000000 INFO @ Fri, 05 Jul 2019 10:25:12: 48000000 INFO @ Fri, 05 Jul 2019 10:25:16: 54000000 INFO @ Fri, 05 Jul 2019 10:25:18: 49000000 INFO @ Fri, 05 Jul 2019 10:25:20: 49000000 INFO @ Fri, 05 Jul 2019 10:25:23: 55000000 INFO @ Fri, 05 Jul 2019 10:25:26: 50000000 INFO @ Fri, 05 Jul 2019 10:25:27: 50000000 INFO @ Fri, 05 Jul 2019 10:25:31: 56000000 INFO @ Fri, 05 Jul 2019 10:25:34: 51000000 INFO @ Fri, 05 Jul 2019 10:25:35: 51000000 INFO @ Fri, 05 Jul 2019 10:25:37: 57000000 INFO @ Fri, 05 Jul 2019 10:25:42: 52000000 INFO @ Fri, 05 Jul 2019 10:25:43: 52000000 INFO @ Fri, 05 Jul 2019 10:25:44: 58000000 INFO @ Fri, 05 Jul 2019 10:25:49: 53000000 INFO @ Fri, 05 Jul 2019 10:25:50: 53000000 INFO @ Fri, 05 Jul 2019 10:25:52: 59000000 INFO @ Fri, 05 Jul 2019 10:25:57: 54000000 INFO @ Fri, 05 Jul 2019 10:25:58: 54000000 INFO @ Fri, 05 Jul 2019 10:25:59: 60000000 INFO @ Fri, 05 Jul 2019 10:26:05: 55000000 INFO @ Fri, 05 Jul 2019 10:26:06: 55000000 INFO @ Fri, 05 Jul 2019 10:26:06: 61000000 INFO @ Fri, 05 Jul 2019 10:26:13: 62000000 INFO @ Fri, 05 Jul 2019 10:26:13: 56000000 INFO @ Fri, 05 Jul 2019 10:26:13: 56000000 INFO @ Fri, 05 Jul 2019 10:26:20: 63000000 INFO @ Fri, 05 Jul 2019 10:26:21: 57000000 INFO @ Fri, 05 Jul 2019 10:26:23: 57000000 INFO @ Fri, 05 Jul 2019 10:26:27: 64000000 INFO @ Fri, 05 Jul 2019 10:26:28: 58000000 INFO @ Fri, 05 Jul 2019 10:26:30: 58000000 INFO @ Fri, 05 Jul 2019 10:26:34: 65000000 INFO @ Fri, 05 Jul 2019 10:26:36: 59000000 INFO @ Fri, 05 Jul 2019 10:26:38: 59000000 INFO @ Fri, 05 Jul 2019 10:26:40: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 10:26:40: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 10:26:40: #1 total tags in treatment: 65689465 INFO @ Fri, 05 Jul 2019 10:26:40: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 10:26:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 10:26:41: #1 tags after filtering in treatment: 65689305 INFO @ Fri, 05 Jul 2019 10:26:41: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 10:26:41: #1 finished! INFO @ Fri, 05 Jul 2019 10:26:41: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 10:26:41: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 10:26:44: 60000000 INFO @ Fri, 05 Jul 2019 10:26:46: 60000000 INFO @ Fri, 05 Jul 2019 10:26:51: 61000000 INFO @ Fri, 05 Jul 2019 10:26:53: 61000000 INFO @ Fri, 05 Jul 2019 10:26:56: #2 number of paired peaks: 151931 INFO @ Fri, 05 Jul 2019 10:26:56: start model_add_line... INFO @ Fri, 05 Jul 2019 10:26:58: start X-correlation... INFO @ Fri, 05 Jul 2019 10:26:58: end of X-cor INFO @ Fri, 05 Jul 2019 10:26:58: #2 finished! INFO @ Fri, 05 Jul 2019 10:26:58: #2 predicted fragment length is 149 bps INFO @ Fri, 05 Jul 2019 10:26:58: #2 alternative fragment length(s) may be 3,149 bps INFO @ Fri, 05 Jul 2019 10:26:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.20_model.r INFO @ Fri, 05 Jul 2019 10:26:58: #3 Call peaks... INFO @ Fri, 05 Jul 2019 10:26:58: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 10:26:59: 62000000 INFO @ Fri, 05 Jul 2019 10:27:01: 62000000 INFO @ Fri, 05 Jul 2019 10:27:07: 63000000 INFO @ Fri, 05 Jul 2019 10:27:09: 63000000 INFO @ Fri, 05 Jul 2019 10:27:15: 64000000 INFO @ Fri, 05 Jul 2019 10:27:16: 64000000 INFO @ Fri, 05 Jul 2019 10:27:22: 65000000 INFO @ Fri, 05 Jul 2019 10:27:24: 65000000 INFO @ Fri, 05 Jul 2019 10:27:28: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 10:27:28: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 10:27:28: #1 total tags in treatment: 65689465 INFO @ Fri, 05 Jul 2019 10:27:28: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 10:27:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 10:27:30: #1 tags after filtering in treatment: 65689305 INFO @ Fri, 05 Jul 2019 10:27:30: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 10:27:30: #1 finished! INFO @ Fri, 05 Jul 2019 10:27:30: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 10:27:30: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 10:27:30: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 10:27:30: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 10:27:30: #1 total tags in treatment: 65689465 INFO @ Fri, 05 Jul 2019 10:27:30: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 10:27:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 10:27:32: #1 tags after filtering in treatment: 65689305 INFO @ Fri, 05 Jul 2019 10:27:32: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 10:27:32: #1 finished! INFO @ Fri, 05 Jul 2019 10:27:32: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 10:27:32: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 10:27:45: #2 number of paired peaks: 151931 INFO @ Fri, 05 Jul 2019 10:27:45: start model_add_line... INFO @ Fri, 05 Jul 2019 10:27:46: start X-correlation... INFO @ Fri, 05 Jul 2019 10:27:46: end of X-cor INFO @ Fri, 05 Jul 2019 10:27:46: #2 finished! INFO @ Fri, 05 Jul 2019 10:27:46: #2 predicted fragment length is 149 bps INFO @ Fri, 05 Jul 2019 10:27:46: #2 alternative fragment length(s) may be 3,149 bps INFO @ Fri, 05 Jul 2019 10:27:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.05_model.r INFO @ Fri, 05 Jul 2019 10:27:46: #3 Call peaks... INFO @ Fri, 05 Jul 2019 10:27:46: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 10:27:47: #2 number of paired peaks: 151931 INFO @ Fri, 05 Jul 2019 10:27:47: start model_add_line... INFO @ Fri, 05 Jul 2019 10:27:48: start X-correlation... INFO @ Fri, 05 Jul 2019 10:27:48: end of X-cor INFO @ Fri, 05 Jul 2019 10:27:48: #2 finished! INFO @ Fri, 05 Jul 2019 10:27:48: #2 predicted fragment length is 149 bps INFO @ Fri, 05 Jul 2019 10:27:48: #2 alternative fragment length(s) may be 3,149 bps INFO @ Fri, 05 Jul 2019 10:27:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.10_model.r INFO @ Fri, 05 Jul 2019 10:27:48: #3 Call peaks... INFO @ Fri, 05 Jul 2019 10:27:48: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 10:30:17: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 10:31:03: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 10:31:07: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 10:31:59: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.20_peaks.xls INFO @ Fri, 05 Jul 2019 10:31:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 10:31:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.20_summits.bed INFO @ Fri, 05 Jul 2019 10:31:59: Done! pass1 - making usageList (33 chroms): 144 millis pass2 - checking and writing primary data (5051 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 10:32:48: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.05_peaks.xls INFO @ Fri, 05 Jul 2019 10:32:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 10:32:50: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.10_peaks.xls INFO @ Fri, 05 Jul 2019 10:32:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 10:32:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.05_summits.bed INFO @ Fri, 05 Jul 2019 10:32:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101991/ERX101991.10_summits.bed INFO @ Fri, 05 Jul 2019 10:32:51: Done! INFO @ Fri, 05 Jul 2019 10:32:51: Done! pass1 - making usageList (101 chroms): 10 millis pass2 - checking and writing primary data (49941 records, 4 fields): 63 millis pass1 - making usageList (181 chroms): 25 millis pass2 - checking and writing primary data (133301 records, 4 fields): 160 millis CompletedMACS2peakCalling CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。