Job ID = 2001657 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T22:15:01 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:31:57 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:49:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:53:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:54:29 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:06:07 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:07:08 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:07:58 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:13:25 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:13:52 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:18:43 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 99,797,178 reads read : 99,797,178 reads written : 99,797,178 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:22:46 99797178 reads; of these: 99797178 (100.00%) were unpaired; of these: 3713542 (3.72%) aligned 0 times 69702693 (69.84%) aligned exactly 1 time 26380943 (26.43%) aligned >1 times 96.28% overall alignment rate Time searching: 01:22:49 Overall time: 01:22:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 8328582 / 96083636 = 0.0867 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 10:46:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:46:10: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:46:10: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:46:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:46:10: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:46:10: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:46:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:46:11: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:46:11: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:46:19: 1000000 INFO @ Fri, 05 Jul 2019 10:46:19: 1000000 INFO @ Fri, 05 Jul 2019 10:46:20: 1000000 INFO @ Fri, 05 Jul 2019 10:46:29: 2000000 INFO @ Fri, 05 Jul 2019 10:46:29: 2000000 INFO @ Fri, 05 Jul 2019 10:46:29: 2000000 INFO @ Fri, 05 Jul 2019 10:46:39: 3000000 INFO @ Fri, 05 Jul 2019 10:46:39: 3000000 INFO @ Fri, 05 Jul 2019 10:46:40: 3000000 INFO @ Fri, 05 Jul 2019 10:46:48: 4000000 INFO @ Fri, 05 Jul 2019 10:46:48: 4000000 INFO @ Fri, 05 Jul 2019 10:46:49: 4000000 INFO @ Fri, 05 Jul 2019 10:46:57: 5000000 INFO @ Fri, 05 Jul 2019 10:46:57: 5000000 INFO @ Fri, 05 Jul 2019 10:46:58: 5000000 INFO @ Fri, 05 Jul 2019 10:47:05: 6000000 INFO @ Fri, 05 Jul 2019 10:47:05: 6000000 INFO @ Fri, 05 Jul 2019 10:47:06: 6000000 INFO @ Fri, 05 Jul 2019 10:47:14: 7000000 INFO @ Fri, 05 Jul 2019 10:47:14: 7000000 INFO @ Fri, 05 Jul 2019 10:47:15: 7000000 INFO @ Fri, 05 Jul 2019 10:47:22: 8000000 INFO @ Fri, 05 Jul 2019 10:47:23: 8000000 INFO @ Fri, 05 Jul 2019 10:47:23: 8000000 INFO @ Fri, 05 Jul 2019 10:47:31: 9000000 INFO @ Fri, 05 Jul 2019 10:47:31: 9000000 INFO @ Fri, 05 Jul 2019 10:47:32: 9000000 INFO @ Fri, 05 Jul 2019 10:47:39: 10000000 INFO @ Fri, 05 Jul 2019 10:47:40: 10000000 INFO @ Fri, 05 Jul 2019 10:47:40: 10000000 INFO @ Fri, 05 Jul 2019 10:47:48: 11000000 INFO @ Fri, 05 Jul 2019 10:47:48: 11000000 INFO @ Fri, 05 Jul 2019 10:47:49: 11000000 INFO @ Fri, 05 Jul 2019 10:47:56: 12000000 INFO @ Fri, 05 Jul 2019 10:47:57: 12000000 INFO @ Fri, 05 Jul 2019 10:47:58: 12000000 INFO @ Fri, 05 Jul 2019 10:48:05: 13000000 INFO @ Fri, 05 Jul 2019 10:48:07: 13000000 INFO @ Fri, 05 Jul 2019 10:48:08: 13000000 INFO @ Fri, 05 Jul 2019 10:48:13: 14000000 INFO @ Fri, 05 Jul 2019 10:48:16: 14000000 INFO @ Fri, 05 Jul 2019 10:48:17: 14000000 INFO @ Fri, 05 Jul 2019 10:48:22: 15000000 INFO @ Fri, 05 Jul 2019 10:48:25: 15000000 INFO @ Fri, 05 Jul 2019 10:48:26: 15000000 INFO @ Fri, 05 Jul 2019 10:48:30: 16000000 INFO @ Fri, 05 Jul 2019 10:48:35: 16000000 INFO @ Fri, 05 Jul 2019 10:48:36: 16000000 INFO @ Fri, 05 Jul 2019 10:48:39: 17000000 INFO @ Fri, 05 Jul 2019 10:48:44: 17000000 INFO @ Fri, 05 Jul 2019 10:48:45: 17000000 INFO @ Fri, 05 Jul 2019 10:48:49: 18000000 INFO @ Fri, 05 Jul 2019 10:48:54: 18000000 INFO @ Fri, 05 Jul 2019 10:48:55: 18000000 INFO @ Fri, 05 Jul 2019 10:48:57: 19000000 INFO @ Fri, 05 Jul 2019 10:49:04: 19000000 INFO @ Fri, 05 Jul 2019 10:49:05: 19000000 INFO @ Fri, 05 Jul 2019 10:49:07: 20000000 INFO @ Fri, 05 Jul 2019 10:49:13: 20000000 INFO @ Fri, 05 Jul 2019 10:49:14: 20000000 INFO @ Fri, 05 Jul 2019 10:49:16: 21000000 INFO @ Fri, 05 Jul 2019 10:49:22: 21000000 INFO @ Fri, 05 Jul 2019 10:49:23: 21000000 INFO @ Fri, 05 Jul 2019 10:49:25: 22000000 INFO @ Fri, 05 Jul 2019 10:49:33: 22000000 INFO @ Fri, 05 Jul 2019 10:49:34: 22000000 INFO @ Fri, 05 Jul 2019 10:49:35: 23000000 INFO @ Fri, 05 Jul 2019 10:49:43: 23000000 INFO @ Fri, 05 Jul 2019 10:49:44: 23000000 INFO @ Fri, 05 Jul 2019 10:49:45: 24000000 INFO @ Fri, 05 Jul 2019 10:49:54: 24000000 INFO @ Fri, 05 Jul 2019 10:49:54: 24000000 INFO @ Fri, 05 Jul 2019 10:49:56: 25000000 INFO @ Fri, 05 Jul 2019 10:50:04: 25000000 INFO @ Fri, 05 Jul 2019 10:50:04: 25000000 INFO @ Fri, 05 Jul 2019 10:50:07: 26000000 INFO @ Fri, 05 Jul 2019 10:50:13: 26000000 INFO @ Fri, 05 Jul 2019 10:50:14: 26000000 INFO @ Fri, 05 Jul 2019 10:50:16: 27000000 INFO @ Fri, 05 Jul 2019 10:50:23: 27000000 INFO @ Fri, 05 Jul 2019 10:50:24: 27000000 INFO @ Fri, 05 Jul 2019 10:50:26: 28000000 INFO @ Fri, 05 Jul 2019 10:50:34: 28000000 INFO @ Fri, 05 Jul 2019 10:50:35: 28000000 INFO @ Fri, 05 Jul 2019 10:50:36: 29000000 INFO @ Fri, 05 Jul 2019 10:50:46: 30000000 INFO @ Fri, 05 Jul 2019 10:50:48: 29000000 INFO @ Fri, 05 Jul 2019 10:50:48: 29000000 INFO @ Fri, 05 Jul 2019 10:50:55: 31000000 INFO @ Fri, 05 Jul 2019 10:51:01: 30000000 INFO @ Fri, 05 Jul 2019 10:51:01: 30000000 INFO @ Fri, 05 Jul 2019 10:51:08: 32000000 INFO @ Fri, 05 Jul 2019 10:51:12: 31000000 INFO @ Fri, 05 Jul 2019 10:51:12: 31000000 INFO @ Fri, 05 Jul 2019 10:51:18: 33000000 INFO @ Fri, 05 Jul 2019 10:51:22: 32000000 INFO @ Fri, 05 Jul 2019 10:51:22: 32000000 INFO @ Fri, 05 Jul 2019 10:51:26: 34000000 INFO @ Fri, 05 Jul 2019 10:51:30: 33000000 INFO @ Fri, 05 Jul 2019 10:51:31: 33000000 INFO @ Fri, 05 Jul 2019 10:51:37: 35000000 INFO @ Fri, 05 Jul 2019 10:51:39: 34000000 INFO @ Fri, 05 Jul 2019 10:51:40: 34000000 INFO @ Fri, 05 Jul 2019 10:51:47: 36000000 INFO @ Fri, 05 Jul 2019 10:51:50: 35000000 INFO @ Fri, 05 Jul 2019 10:51:50: 35000000 INFO @ Fri, 05 Jul 2019 10:51:57: 37000000 INFO @ Fri, 05 Jul 2019 10:52:01: 36000000 INFO @ Fri, 05 Jul 2019 10:52:01: 36000000 INFO @ Fri, 05 Jul 2019 10:52:08: 38000000 INFO @ Fri, 05 Jul 2019 10:52:13: 37000000 INFO @ Fri, 05 Jul 2019 10:52:13: 37000000 INFO @ Fri, 05 Jul 2019 10:52:18: 39000000 INFO @ Fri, 05 Jul 2019 10:52:24: 38000000 INFO @ Fri, 05 Jul 2019 10:52:24: 38000000 INFO @ Fri, 05 Jul 2019 10:52:28: 40000000 INFO @ Fri, 05 Jul 2019 10:52:34: 39000000 INFO @ Fri, 05 Jul 2019 10:52:34: 39000000 INFO @ Fri, 05 Jul 2019 10:52:37: 41000000 INFO @ Fri, 05 Jul 2019 10:52:43: 40000000 INFO @ Fri, 05 Jul 2019 10:52:44: 40000000 INFO @ Fri, 05 Jul 2019 10:52:46: 42000000 INFO @ Fri, 05 Jul 2019 10:52:52: 41000000 INFO @ Fri, 05 Jul 2019 10:52:54: 41000000 INFO @ Fri, 05 Jul 2019 10:52:55: 43000000 INFO @ Fri, 05 Jul 2019 10:53:02: 42000000 INFO @ Fri, 05 Jul 2019 10:53:04: 44000000 INFO @ Fri, 05 Jul 2019 10:53:04: 42000000 INFO @ Fri, 05 Jul 2019 10:53:12: 43000000 INFO @ Fri, 05 Jul 2019 10:53:14: 45000000 INFO @ Fri, 05 Jul 2019 10:53:15: 43000000 INFO @ Fri, 05 Jul 2019 10:53:23: 44000000 INFO @ Fri, 05 Jul 2019 10:53:25: 46000000 INFO @ Fri, 05 Jul 2019 10:53:25: 44000000 INFO @ Fri, 05 Jul 2019 10:53:32: 45000000 INFO @ Fri, 05 Jul 2019 10:53:33: 47000000 INFO @ Fri, 05 Jul 2019 10:53:34: 45000000 INFO @ Fri, 05 Jul 2019 10:53:42: 48000000 INFO @ Fri, 05 Jul 2019 10:53:42: 46000000 INFO @ Fri, 05 Jul 2019 10:53:44: 46000000 INFO @ Fri, 05 Jul 2019 10:53:51: 49000000 INFO @ Fri, 05 Jul 2019 10:53:52: 47000000 INFO @ Fri, 05 Jul 2019 10:53:53: 47000000 INFO @ Fri, 05 Jul 2019 10:54:00: 50000000 INFO @ Fri, 05 Jul 2019 10:54:01: 48000000 INFO @ Fri, 05 Jul 2019 10:54:02: 48000000 INFO @ Fri, 05 Jul 2019 10:54:10: 51000000 INFO @ Fri, 05 Jul 2019 10:54:10: 49000000 INFO @ Fri, 05 Jul 2019 10:54:12: 49000000 INFO @ Fri, 05 Jul 2019 10:54:20: 52000000 INFO @ Fri, 05 Jul 2019 10:54:20: 50000000 INFO @ Fri, 05 Jul 2019 10:54:22: 50000000 INFO @ Fri, 05 Jul 2019 10:54:28: 53000000 INFO @ Fri, 05 Jul 2019 10:54:29: 51000000 INFO @ Fri, 05 Jul 2019 10:54:30: 51000000 INFO @ Fri, 05 Jul 2019 10:54:37: 54000000 INFO @ Fri, 05 Jul 2019 10:54:38: 52000000 INFO @ Fri, 05 Jul 2019 10:54:40: 52000000 INFO @ Fri, 05 Jul 2019 10:54:48: 55000000 INFO @ Fri, 05 Jul 2019 10:54:48: 53000000 INFO @ Fri, 05 Jul 2019 10:54:49: 53000000 INFO @ Fri, 05 Jul 2019 10:54:57: 56000000 INFO @ Fri, 05 Jul 2019 10:54:58: 54000000 INFO @ Fri, 05 Jul 2019 10:54:59: 54000000 INFO @ Fri, 05 Jul 2019 10:55:06: 57000000 INFO @ Fri, 05 Jul 2019 10:55:08: 55000000 INFO @ Fri, 05 Jul 2019 10:55:09: 55000000 INFO @ Fri, 05 Jul 2019 10:55:15: 58000000 INFO @ Fri, 05 Jul 2019 10:55:17: 56000000 INFO @ Fri, 05 Jul 2019 10:55:18: 56000000 INFO @ Fri, 05 Jul 2019 10:55:24: 59000000 INFO @ Fri, 05 Jul 2019 10:55:27: 57000000 INFO @ Fri, 05 Jul 2019 10:55:27: 57000000 INFO @ Fri, 05 Jul 2019 10:55:33: 60000000 INFO @ Fri, 05 Jul 2019 10:55:36: 58000000 INFO @ Fri, 05 Jul 2019 10:55:37: 58000000 INFO @ Fri, 05 Jul 2019 10:55:42: 61000000 INFO @ Fri, 05 Jul 2019 10:55:45: 59000000 INFO @ Fri, 05 Jul 2019 10:55:46: 59000000 INFO @ Fri, 05 Jul 2019 10:55:53: 62000000 INFO @ Fri, 05 Jul 2019 10:55:55: 60000000 INFO @ Fri, 05 Jul 2019 10:55:56: 60000000 INFO @ Fri, 05 Jul 2019 10:56:02: 63000000 INFO @ Fri, 05 Jul 2019 10:56:05: 61000000 INFO @ Fri, 05 Jul 2019 10:56:05: 61000000 INFO @ Fri, 05 Jul 2019 10:56:11: 64000000 INFO @ Fri, 05 Jul 2019 10:56:15: 62000000 INFO @ Fri, 05 Jul 2019 10:56:16: 62000000 INFO @ Fri, 05 Jul 2019 10:56:20: 65000000 INFO @ Fri, 05 Jul 2019 10:56:25: 63000000 INFO @ Fri, 05 Jul 2019 10:56:26: 63000000 INFO @ Fri, 05 Jul 2019 10:56:28: 66000000 INFO @ Fri, 05 Jul 2019 10:56:36: 64000000 INFO @ Fri, 05 Jul 2019 10:56:36: 64000000 INFO @ Fri, 05 Jul 2019 10:56:38: 67000000 INFO @ Fri, 05 Jul 2019 10:56:47: 65000000 INFO @ Fri, 05 Jul 2019 10:56:47: 65000000 INFO @ Fri, 05 Jul 2019 10:56:50: 68000000 INFO @ Fri, 05 Jul 2019 10:56:57: 66000000 INFO @ Fri, 05 Jul 2019 10:56:58: 66000000 INFO @ Fri, 05 Jul 2019 10:57:01: 69000000 INFO @ Fri, 05 Jul 2019 10:57:07: 67000000 INFO @ Fri, 05 Jul 2019 10:57:10: 67000000 INFO @ Fri, 05 Jul 2019 10:57:13: 70000000 INFO @ Fri, 05 Jul 2019 10:57:18: 68000000 INFO @ Fri, 05 Jul 2019 10:57:20: 68000000 INFO @ Fri, 05 Jul 2019 10:57:23: 71000000 INFO @ Fri, 05 Jul 2019 10:57:27: 69000000 INFO @ Fri, 05 Jul 2019 10:57:30: 69000000 INFO @ Fri, 05 Jul 2019 10:57:33: 72000000 INFO @ Fri, 05 Jul 2019 10:57:36: 70000000 INFO @ Fri, 05 Jul 2019 10:57:40: 70000000 INFO @ Fri, 05 Jul 2019 10:57:43: 73000000 INFO @ Fri, 05 Jul 2019 10:57:46: 71000000 INFO @ Fri, 05 Jul 2019 10:57:52: 71000000 INFO @ Fri, 05 Jul 2019 10:57:53: 74000000 INFO @ Fri, 05 Jul 2019 10:57:58: 72000000 INFO @ Fri, 05 Jul 2019 10:58:04: 72000000 INFO @ Fri, 05 Jul 2019 10:58:04: 75000000 INFO @ Fri, 05 Jul 2019 10:58:09: 73000000 INFO @ Fri, 05 Jul 2019 10:58:15: 76000000 INFO @ Fri, 05 Jul 2019 10:58:16: 73000000 INFO @ Fri, 05 Jul 2019 10:58:21: 74000000 INFO @ Fri, 05 Jul 2019 10:58:28: 74000000 INFO @ Fri, 05 Jul 2019 10:58:29: 77000000 INFO @ Fri, 05 Jul 2019 10:58:32: 75000000 INFO @ Fri, 05 Jul 2019 10:58:40: 78000000 INFO @ Fri, 05 Jul 2019 10:58:40: 75000000 INFO @ Fri, 05 Jul 2019 10:58:44: 76000000 INFO @ Fri, 05 Jul 2019 10:58:49: 79000000 INFO @ Fri, 05 Jul 2019 10:58:51: 76000000 INFO @ Fri, 05 Jul 2019 10:58:55: 77000000 INFO @ Fri, 05 Jul 2019 10:58:58: 80000000 INFO @ Fri, 05 Jul 2019 10:59:02: 77000000 INFO @ Fri, 05 Jul 2019 10:59:05: 78000000 INFO @ Fri, 05 Jul 2019 10:59:08: 81000000 INFO @ Fri, 05 Jul 2019 10:59:13: 78000000 INFO @ Fri, 05 Jul 2019 10:59:16: 79000000 INFO @ Fri, 05 Jul 2019 10:59:18: 82000000 INFO @ Fri, 05 Jul 2019 10:59:24: 79000000 INFO @ Fri, 05 Jul 2019 10:59:27: 80000000 INFO @ Fri, 05 Jul 2019 10:59:30: 83000000 INFO @ Fri, 05 Jul 2019 10:59:35: 80000000 INFO @ Fri, 05 Jul 2019 10:59:37: 81000000 INFO @ Fri, 05 Jul 2019 10:59:41: 84000000 INFO @ Fri, 05 Jul 2019 10:59:46: 81000000 INFO @ Fri, 05 Jul 2019 10:59:46: 82000000 INFO @ Fri, 05 Jul 2019 10:59:52: 85000000 INFO @ Fri, 05 Jul 2019 10:59:55: 83000000 INFO @ Fri, 05 Jul 2019 10:59:57: 82000000 INFO @ Fri, 05 Jul 2019 11:00:03: 86000000 INFO @ Fri, 05 Jul 2019 11:00:05: 84000000 INFO @ Fri, 05 Jul 2019 11:00:07: 83000000 INFO @ Fri, 05 Jul 2019 11:00:14: 87000000 INFO @ Fri, 05 Jul 2019 11:00:15: 85000000 INFO @ Fri, 05 Jul 2019 11:00:18: 84000000 INFO @ Fri, 05 Jul 2019 11:00:23: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 11:00:23: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 11:00:23: #1 total tags in treatment: 87755054 INFO @ Fri, 05 Jul 2019 11:00:23: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 11:00:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 11:00:24: 86000000 INFO @ Fri, 05 Jul 2019 11:00:25: #1 tags after filtering in treatment: 87755013 INFO @ Fri, 05 Jul 2019 11:00:25: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 11:00:25: #1 finished! INFO @ Fri, 05 Jul 2019 11:00:25: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 11:00:25: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 11:00:28: 85000000 INFO @ Fri, 05 Jul 2019 11:00:33: 87000000 INFO @ Fri, 05 Jul 2019 11:00:35: #2 number of paired peaks: 10936 INFO @ Fri, 05 Jul 2019 11:00:35: start model_add_line... INFO @ Fri, 05 Jul 2019 11:00:36: start X-correlation... INFO @ Fri, 05 Jul 2019 11:00:36: end of X-cor INFO @ Fri, 05 Jul 2019 11:00:36: #2 finished! INFO @ Fri, 05 Jul 2019 11:00:36: #2 predicted fragment length is 115 bps INFO @ Fri, 05 Jul 2019 11:00:36: #2 alternative fragment length(s) may be 2,115,493 bps INFO @ Fri, 05 Jul 2019 11:00:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.20_model.r INFO @ Fri, 05 Jul 2019 11:00:37: #3 Call peaks... INFO @ Fri, 05 Jul 2019 11:00:37: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 11:00:37: 86000000 INFO @ Fri, 05 Jul 2019 11:00:41: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 11:00:41: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 11:00:41: #1 total tags in treatment: 87755054 INFO @ Fri, 05 Jul 2019 11:00:41: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 11:00:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 11:00:43: #1 tags after filtering in treatment: 87755013 INFO @ Fri, 05 Jul 2019 11:00:43: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 11:00:43: #1 finished! INFO @ Fri, 05 Jul 2019 11:00:43: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 11:00:43: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 11:00:46: 87000000 INFO @ Fri, 05 Jul 2019 11:00:53: #2 number of paired peaks: 10936 INFO @ Fri, 05 Jul 2019 11:00:53: start model_add_line... INFO @ Fri, 05 Jul 2019 11:00:54: start X-correlation... INFO @ Fri, 05 Jul 2019 11:00:54: end of X-cor INFO @ Fri, 05 Jul 2019 11:00:54: #2 finished! INFO @ Fri, 05 Jul 2019 11:00:54: #2 predicted fragment length is 115 bps INFO @ Fri, 05 Jul 2019 11:00:54: #2 alternative fragment length(s) may be 2,115,493 bps INFO @ Fri, 05 Jul 2019 11:00:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.05_model.r INFO @ Fri, 05 Jul 2019 11:00:54: #3 Call peaks... INFO @ Fri, 05 Jul 2019 11:00:54: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 11:00:54: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 11:00:54: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 11:00:54: #1 total tags in treatment: 87755054 INFO @ Fri, 05 Jul 2019 11:00:54: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 11:00:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 11:00:57: #1 tags after filtering in treatment: 87755013 INFO @ Fri, 05 Jul 2019 11:00:57: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 11:00:57: #1 finished! INFO @ Fri, 05 Jul 2019 11:00:57: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 11:00:57: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 11:01:06: #2 number of paired peaks: 10936 INFO @ Fri, 05 Jul 2019 11:01:06: start model_add_line... INFO @ Fri, 05 Jul 2019 11:01:07: start X-correlation... INFO @ Fri, 05 Jul 2019 11:01:07: end of X-cor INFO @ Fri, 05 Jul 2019 11:01:07: #2 finished! INFO @ Fri, 05 Jul 2019 11:01:07: #2 predicted fragment length is 115 bps INFO @ Fri, 05 Jul 2019 11:01:07: #2 alternative fragment length(s) may be 2,115,493 bps INFO @ Fri, 05 Jul 2019 11:01:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.10_model.r INFO @ Fri, 05 Jul 2019 11:01:07: #3 Call peaks... INFO @ Fri, 05 Jul 2019 11:01:07: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 11:05:17: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 11:05:34: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 11:05:44: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 11:07:58: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.20_peaks.xls INFO @ Fri, 05 Jul 2019 11:07:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 11:07:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.20_summits.bed INFO @ Fri, 05 Jul 2019 11:07:59: Done! pass1 - making usageList (43 chroms): 2 millis pass2 - checking and writing primary data (482 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 11:08:19: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.05_peaks.xls INFO @ Fri, 05 Jul 2019 11:08:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 11:08:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.05_summits.bed INFO @ Fri, 05 Jul 2019 11:08:19: Done! pass1 - making usageList (102 chroms): 4 millis pass2 - checking and writing primary data (5267 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 11:08:24: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.10_peaks.xls INFO @ Fri, 05 Jul 2019 11:08:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 11:08:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101972/ERX101972.10_summits.bed INFO @ Fri, 05 Jul 2019 11:08:24: Done! pass1 - making usageList (64 chroms): 2 millis pass2 - checking and writing primary data (1562 records, 4 fields): 8 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。