Job ID = 2001652 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T22:06:05 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:11:37 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:36 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:39 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 84,309,514 reads read : 84,309,514 reads written : 84,309,514 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:03:28 84309514 reads; of these: 84309514 (100.00%) were unpaired; of these: 1418616 (1.68%) aligned 0 times 73377037 (87.03%) aligned exactly 1 time 9513861 (11.28%) aligned >1 times 98.32% overall alignment rate Time searching: 01:03:31 Overall time: 01:03:31 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 15460097 / 82890898 = 0.1865 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 09:03:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:03:08: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:03:08: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:03:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:03:08: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:03:08: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:03:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:03:09: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:03:09: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:03:15: 1000000 INFO @ Fri, 05 Jul 2019 09:03:16: 1000000 INFO @ Fri, 05 Jul 2019 09:03:18: 1000000 INFO @ Fri, 05 Jul 2019 09:03:23: 2000000 INFO @ Fri, 05 Jul 2019 09:03:23: 2000000 INFO @ Fri, 05 Jul 2019 09:03:28: 2000000 INFO @ Fri, 05 Jul 2019 09:03:31: 3000000 INFO @ Fri, 05 Jul 2019 09:03:31: 3000000 INFO @ Fri, 05 Jul 2019 09:03:36: 3000000 INFO @ Fri, 05 Jul 2019 09:03:38: 4000000 INFO @ Fri, 05 Jul 2019 09:03:39: 4000000 INFO @ Fri, 05 Jul 2019 09:03:46: 4000000 INFO @ Fri, 05 Jul 2019 09:03:46: 5000000 INFO @ Fri, 05 Jul 2019 09:03:47: 5000000 INFO @ Fri, 05 Jul 2019 09:03:54: 6000000 INFO @ Fri, 05 Jul 2019 09:03:54: 5000000 INFO @ Fri, 05 Jul 2019 09:03:55: 6000000 INFO @ Fri, 05 Jul 2019 09:04:02: 7000000 INFO @ Fri, 05 Jul 2019 09:04:03: 7000000 INFO @ Fri, 05 Jul 2019 09:04:03: 6000000 INFO @ Fri, 05 Jul 2019 09:04:10: 8000000 INFO @ Fri, 05 Jul 2019 09:04:10: 8000000 INFO @ Fri, 05 Jul 2019 09:04:12: 7000000 INFO @ Fri, 05 Jul 2019 09:04:17: 9000000 INFO @ Fri, 05 Jul 2019 09:04:18: 9000000 INFO @ Fri, 05 Jul 2019 09:04:21: 8000000 INFO @ Fri, 05 Jul 2019 09:04:25: 10000000 INFO @ Fri, 05 Jul 2019 09:04:26: 10000000 INFO @ Fri, 05 Jul 2019 09:04:29: 9000000 INFO @ Fri, 05 Jul 2019 09:04:33: 11000000 INFO @ Fri, 05 Jul 2019 09:04:34: 11000000 INFO @ Fri, 05 Jul 2019 09:04:38: 10000000 INFO @ Fri, 05 Jul 2019 09:04:41: 12000000 INFO @ Fri, 05 Jul 2019 09:04:41: 12000000 INFO @ Fri, 05 Jul 2019 09:04:47: 11000000 INFO @ Fri, 05 Jul 2019 09:04:48: 13000000 INFO @ Fri, 05 Jul 2019 09:04:49: 13000000 INFO @ Fri, 05 Jul 2019 09:04:55: 12000000 INFO @ Fri, 05 Jul 2019 09:04:56: 14000000 INFO @ Fri, 05 Jul 2019 09:04:57: 14000000 INFO @ Fri, 05 Jul 2019 09:05:04: 15000000 INFO @ Fri, 05 Jul 2019 09:05:04: 13000000 INFO @ Fri, 05 Jul 2019 09:05:04: 15000000 INFO @ Fri, 05 Jul 2019 09:05:11: 16000000 INFO @ Fri, 05 Jul 2019 09:05:12: 16000000 INFO @ Fri, 05 Jul 2019 09:05:13: 14000000 INFO @ Fri, 05 Jul 2019 09:05:19: 17000000 INFO @ Fri, 05 Jul 2019 09:05:20: 17000000 INFO @ Fri, 05 Jul 2019 09:05:22: 15000000 INFO @ Fri, 05 Jul 2019 09:05:27: 18000000 INFO @ Fri, 05 Jul 2019 09:05:27: 18000000 INFO @ Fri, 05 Jul 2019 09:05:30: 16000000 INFO @ Fri, 05 Jul 2019 09:05:34: 19000000 INFO @ Fri, 05 Jul 2019 09:05:35: 19000000 INFO @ Fri, 05 Jul 2019 09:05:39: 17000000 INFO @ Fri, 05 Jul 2019 09:05:42: 20000000 INFO @ Fri, 05 Jul 2019 09:05:42: 20000000 INFO @ Fri, 05 Jul 2019 09:05:48: 18000000 INFO @ Fri, 05 Jul 2019 09:05:50: 21000000 INFO @ Fri, 05 Jul 2019 09:05:50: 21000000 INFO @ Fri, 05 Jul 2019 09:05:56: 19000000 INFO @ Fri, 05 Jul 2019 09:05:57: 22000000 INFO @ Fri, 05 Jul 2019 09:05:58: 22000000 INFO @ Fri, 05 Jul 2019 09:06:05: 23000000 INFO @ Fri, 05 Jul 2019 09:06:05: 20000000 INFO @ Fri, 05 Jul 2019 09:06:06: 23000000 INFO @ Fri, 05 Jul 2019 09:06:12: 24000000 INFO @ Fri, 05 Jul 2019 09:06:13: 24000000 INFO @ Fri, 05 Jul 2019 09:06:13: 21000000 INFO @ Fri, 05 Jul 2019 09:06:20: 25000000 INFO @ Fri, 05 Jul 2019 09:06:21: 25000000 INFO @ Fri, 05 Jul 2019 09:06:22: 22000000 INFO @ Fri, 05 Jul 2019 09:06:28: 26000000 INFO @ Fri, 05 Jul 2019 09:06:28: 26000000 INFO @ Fri, 05 Jul 2019 09:06:31: 23000000 INFO @ Fri, 05 Jul 2019 09:06:35: 27000000 INFO @ Fri, 05 Jul 2019 09:06:36: 27000000 INFO @ Fri, 05 Jul 2019 09:06:39: 24000000 INFO @ Fri, 05 Jul 2019 09:06:43: 28000000 INFO @ Fri, 05 Jul 2019 09:06:44: 28000000 INFO @ Fri, 05 Jul 2019 09:06:48: 25000000 INFO @ Fri, 05 Jul 2019 09:06:50: 29000000 INFO @ Fri, 05 Jul 2019 09:06:51: 29000000 INFO @ Fri, 05 Jul 2019 09:06:56: 26000000 INFO @ Fri, 05 Jul 2019 09:06:58: 30000000 INFO @ Fri, 05 Jul 2019 09:06:59: 30000000 INFO @ Fri, 05 Jul 2019 09:07:05: 27000000 INFO @ Fri, 05 Jul 2019 09:07:06: 31000000 INFO @ Fri, 05 Jul 2019 09:07:06: 31000000 INFO @ Fri, 05 Jul 2019 09:07:13: 32000000 INFO @ Fri, 05 Jul 2019 09:07:14: 28000000 INFO @ Fri, 05 Jul 2019 09:07:14: 32000000 INFO @ Fri, 05 Jul 2019 09:07:21: 33000000 INFO @ Fri, 05 Jul 2019 09:07:22: 33000000 INFO @ Fri, 05 Jul 2019 09:07:22: 29000000 INFO @ Fri, 05 Jul 2019 09:07:28: 34000000 INFO @ Fri, 05 Jul 2019 09:07:29: 34000000 INFO @ Fri, 05 Jul 2019 09:07:31: 30000000 INFO @ Fri, 05 Jul 2019 09:07:36: 35000000 INFO @ Fri, 05 Jul 2019 09:07:37: 35000000 INFO @ Fri, 05 Jul 2019 09:07:39: 31000000 INFO @ Fri, 05 Jul 2019 09:07:44: 36000000 INFO @ Fri, 05 Jul 2019 09:07:44: 36000000 INFO @ Fri, 05 Jul 2019 09:07:48: 32000000 INFO @ Fri, 05 Jul 2019 09:07:51: 37000000 INFO @ Fri, 05 Jul 2019 09:07:52: 37000000 INFO @ Fri, 05 Jul 2019 09:07:57: 33000000 INFO @ Fri, 05 Jul 2019 09:07:59: 38000000 INFO @ Fri, 05 Jul 2019 09:08:00: 38000000 INFO @ Fri, 05 Jul 2019 09:08:05: 34000000 INFO @ Fri, 05 Jul 2019 09:08:06: 39000000 INFO @ Fri, 05 Jul 2019 09:08:07: 39000000 INFO @ Fri, 05 Jul 2019 09:08:14: 35000000 INFO @ Fri, 05 Jul 2019 09:08:14: 40000000 INFO @ Fri, 05 Jul 2019 09:08:15: 40000000 INFO @ Fri, 05 Jul 2019 09:08:22: 41000000 INFO @ Fri, 05 Jul 2019 09:08:22: 36000000 INFO @ Fri, 05 Jul 2019 09:08:22: 41000000 INFO @ Fri, 05 Jul 2019 09:08:29: 42000000 INFO @ Fri, 05 Jul 2019 09:08:30: 42000000 INFO @ Fri, 05 Jul 2019 09:08:31: 37000000 INFO @ Fri, 05 Jul 2019 09:08:37: 43000000 INFO @ Fri, 05 Jul 2019 09:08:38: 43000000 INFO @ Fri, 05 Jul 2019 09:08:40: 38000000 INFO @ Fri, 05 Jul 2019 09:08:45: 44000000 INFO @ Fri, 05 Jul 2019 09:08:45: 44000000 INFO @ Fri, 05 Jul 2019 09:08:48: 39000000 INFO @ Fri, 05 Jul 2019 09:08:52: 45000000 INFO @ Fri, 05 Jul 2019 09:08:53: 45000000 INFO @ Fri, 05 Jul 2019 09:08:57: 40000000 INFO @ Fri, 05 Jul 2019 09:09:00: 46000000 INFO @ Fri, 05 Jul 2019 09:09:00: 46000000 INFO @ Fri, 05 Jul 2019 09:09:05: 41000000 INFO @ Fri, 05 Jul 2019 09:09:07: 47000000 INFO @ Fri, 05 Jul 2019 09:09:08: 47000000 INFO @ Fri, 05 Jul 2019 09:09:14: 42000000 INFO @ Fri, 05 Jul 2019 09:09:15: 48000000 INFO @ Fri, 05 Jul 2019 09:09:16: 48000000 INFO @ Fri, 05 Jul 2019 09:09:23: 43000000 INFO @ Fri, 05 Jul 2019 09:09:23: 49000000 INFO @ Fri, 05 Jul 2019 09:09:24: 49000000 INFO @ Fri, 05 Jul 2019 09:09:31: 50000000 INFO @ Fri, 05 Jul 2019 09:09:31: 44000000 INFO @ Fri, 05 Jul 2019 09:09:32: 50000000 INFO @ Fri, 05 Jul 2019 09:09:39: 51000000 INFO @ Fri, 05 Jul 2019 09:09:40: 51000000 INFO @ Fri, 05 Jul 2019 09:09:40: 45000000 INFO @ Fri, 05 Jul 2019 09:09:46: 52000000 INFO @ Fri, 05 Jul 2019 09:09:47: 52000000 INFO @ Fri, 05 Jul 2019 09:09:48: 46000000 INFO @ Fri, 05 Jul 2019 09:09:54: 53000000 INFO @ Fri, 05 Jul 2019 09:09:55: 53000000 INFO @ Fri, 05 Jul 2019 09:09:57: 47000000 INFO @ Fri, 05 Jul 2019 09:10:02: 54000000 INFO @ Fri, 05 Jul 2019 09:10:03: 54000000 INFO @ Fri, 05 Jul 2019 09:10:06: 48000000 INFO @ Fri, 05 Jul 2019 09:10:10: 55000000 INFO @ Fri, 05 Jul 2019 09:10:11: 55000000 INFO @ Fri, 05 Jul 2019 09:10:14: 49000000 INFO @ Fri, 05 Jul 2019 09:10:18: 56000000 INFO @ Fri, 05 Jul 2019 09:10:18: 56000000 INFO @ Fri, 05 Jul 2019 09:10:23: 50000000 INFO @ Fri, 05 Jul 2019 09:10:25: 57000000 INFO @ Fri, 05 Jul 2019 09:10:26: 57000000 INFO @ Fri, 05 Jul 2019 09:10:31: 51000000 INFO @ Fri, 05 Jul 2019 09:10:33: 58000000 INFO @ Fri, 05 Jul 2019 09:10:34: 58000000 INFO @ Fri, 05 Jul 2019 09:10:40: 52000000 INFO @ Fri, 05 Jul 2019 09:10:41: 59000000 INFO @ Fri, 05 Jul 2019 09:10:41: 59000000 INFO @ Fri, 05 Jul 2019 09:10:48: 60000000 INFO @ Fri, 05 Jul 2019 09:10:49: 53000000 INFO @ Fri, 05 Jul 2019 09:10:49: 60000000 INFO @ Fri, 05 Jul 2019 09:10:57: 54000000 INFO @ Fri, 05 Jul 2019 09:10:58: 61000000 INFO @ Fri, 05 Jul 2019 09:10:59: 61000000 INFO @ Fri, 05 Jul 2019 09:11:06: 55000000 INFO @ Fri, 05 Jul 2019 09:11:09: 62000000 INFO @ Fri, 05 Jul 2019 09:11:09: 62000000 INFO @ Fri, 05 Jul 2019 09:11:14: 56000000 INFO @ Fri, 05 Jul 2019 09:11:16: 63000000 INFO @ Fri, 05 Jul 2019 09:11:17: 63000000 INFO @ Fri, 05 Jul 2019 09:11:23: 57000000 INFO @ Fri, 05 Jul 2019 09:11:24: 64000000 INFO @ Fri, 05 Jul 2019 09:11:25: 64000000 INFO @ Fri, 05 Jul 2019 09:11:32: 58000000 INFO @ Fri, 05 Jul 2019 09:11:32: 65000000 INFO @ Fri, 05 Jul 2019 09:11:33: 65000000 INFO @ Fri, 05 Jul 2019 09:11:40: 66000000 INFO @ Fri, 05 Jul 2019 09:11:40: 59000000 INFO @ Fri, 05 Jul 2019 09:11:41: 66000000 INFO @ Fri, 05 Jul 2019 09:11:48: 67000000 INFO @ Fri, 05 Jul 2019 09:11:48: 67000000 INFO @ Fri, 05 Jul 2019 09:11:49: 60000000 INFO @ Fri, 05 Jul 2019 09:11:52: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:11:52: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:11:52: #1 total tags in treatment: 67430801 INFO @ Fri, 05 Jul 2019 09:11:52: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:11:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:11:52: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:11:52: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:11:52: #1 total tags in treatment: 67430801 INFO @ Fri, 05 Jul 2019 09:11:52: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:11:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:11:53: #1 tags after filtering in treatment: 67430658 INFO @ Fri, 05 Jul 2019 09:11:53: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:11:53: #1 finished! INFO @ Fri, 05 Jul 2019 09:11:53: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:11:53: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:11:54: #1 tags after filtering in treatment: 67430658 INFO @ Fri, 05 Jul 2019 09:11:54: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:11:54: #1 finished! INFO @ Fri, 05 Jul 2019 09:11:54: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:11:54: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:11:57: 61000000 INFO @ Fri, 05 Jul 2019 09:12:04: 62000000 INFO @ Fri, 05 Jul 2019 09:12:08: #2 number of paired peaks: 146823 INFO @ Fri, 05 Jul 2019 09:12:08: start model_add_line... INFO @ Fri, 05 Jul 2019 09:12:09: #2 number of paired peaks: 146823 INFO @ Fri, 05 Jul 2019 09:12:09: start model_add_line... INFO @ Fri, 05 Jul 2019 09:12:09: start X-correlation... INFO @ Fri, 05 Jul 2019 09:12:09: end of X-cor INFO @ Fri, 05 Jul 2019 09:12:09: #2 finished! INFO @ Fri, 05 Jul 2019 09:12:09: #2 predicted fragment length is 136 bps INFO @ Fri, 05 Jul 2019 09:12:09: #2 alternative fragment length(s) may be 2,136 bps INFO @ Fri, 05 Jul 2019 09:12:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.05_model.r INFO @ Fri, 05 Jul 2019 09:12:09: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:12:09: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:12:10: start X-correlation... INFO @ Fri, 05 Jul 2019 09:12:10: end of X-cor INFO @ Fri, 05 Jul 2019 09:12:10: #2 finished! INFO @ Fri, 05 Jul 2019 09:12:10: #2 predicted fragment length is 136 bps INFO @ Fri, 05 Jul 2019 09:12:10: #2 alternative fragment length(s) may be 2,136 bps INFO @ Fri, 05 Jul 2019 09:12:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.10_model.r INFO @ Fri, 05 Jul 2019 09:12:10: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:12:10: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:12:13: 63000000 INFO @ Fri, 05 Jul 2019 09:12:21: 64000000 INFO @ Fri, 05 Jul 2019 09:12:30: 65000000 INFO @ Fri, 05 Jul 2019 09:12:38: 66000000 INFO @ Fri, 05 Jul 2019 09:12:47: 67000000 INFO @ Fri, 05 Jul 2019 09:12:51: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:12:51: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:12:51: #1 total tags in treatment: 67430801 INFO @ Fri, 05 Jul 2019 09:12:51: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:12:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:12:53: #1 tags after filtering in treatment: 67430658 INFO @ Fri, 05 Jul 2019 09:12:53: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:12:53: #1 finished! INFO @ Fri, 05 Jul 2019 09:12:53: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:12:53: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:13:08: #2 number of paired peaks: 146823 INFO @ Fri, 05 Jul 2019 09:13:08: start model_add_line... INFO @ Fri, 05 Jul 2019 09:13:09: start X-correlation... INFO @ Fri, 05 Jul 2019 09:13:09: end of X-cor INFO @ Fri, 05 Jul 2019 09:13:09: #2 finished! INFO @ Fri, 05 Jul 2019 09:13:09: #2 predicted fragment length is 136 bps INFO @ Fri, 05 Jul 2019 09:13:09: #2 alternative fragment length(s) may be 2,136 bps INFO @ Fri, 05 Jul 2019 09:13:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.20_model.r INFO @ Fri, 05 Jul 2019 09:13:09: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:13:09: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:15:37: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:15:43: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:16:33: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:17:22: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:17:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:17:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.10_summits.bed INFO @ Fri, 05 Jul 2019 09:17:23: Done! pass1 - making usageList (91 chroms): 13 millis pass2 - checking and writing primary data (43319 records, 4 fields): 56 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:17:34: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:17:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:17:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.05_summits.bed INFO @ Fri, 05 Jul 2019 09:17:37: Done! pass1 - making usageList (176 chroms): 30 millis pass2 - checking and writing primary data (131521 records, 4 fields): 160 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:18:18: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:18:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:18:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101967/ERX101967.20_summits.bed INFO @ Fri, 05 Jul 2019 09:18:18: Done! pass1 - making usageList (35 chroms): 2 millis pass2 - checking and writing primary data (3426 records, 4 fields): 6 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。