Job ID = 2001637 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T22:00:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:02:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:06:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:07:22 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:08:05 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:09:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:09:24 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:13:07 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 91,260,683 reads read : 91,260,683 reads written : 91,260,683 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:10:16 91260683 reads; of these: 91260683 (100.00%) were unpaired; of these: 1580603 (1.73%) aligned 0 times 75685725 (82.93%) aligned exactly 1 time 13994355 (15.33%) aligned >1 times 98.27% overall alignment rate Time searching: 01:10:17 Overall time: 01:10:17 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 18406176 / 89680080 = 0.2052 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 09:02:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:02:53: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:02:53: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:02:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:02:54: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:02:54: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:02:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:02:55: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:02:55: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:03:01: 1000000 INFO @ Fri, 05 Jul 2019 09:03:03: 1000000 INFO @ Fri, 05 Jul 2019 09:03:05: 1000000 INFO @ Fri, 05 Jul 2019 09:03:08: 2000000 INFO @ Fri, 05 Jul 2019 09:03:12: 2000000 INFO @ Fri, 05 Jul 2019 09:03:15: 2000000 INFO @ Fri, 05 Jul 2019 09:03:16: 3000000 INFO @ Fri, 05 Jul 2019 09:03:20: 3000000 INFO @ Fri, 05 Jul 2019 09:03:23: 4000000 INFO @ Fri, 05 Jul 2019 09:03:24: 3000000 INFO @ Fri, 05 Jul 2019 09:03:28: 4000000 INFO @ Fri, 05 Jul 2019 09:03:30: 5000000 INFO @ Fri, 05 Jul 2019 09:03:33: 4000000 INFO @ Fri, 05 Jul 2019 09:03:36: 5000000 INFO @ Fri, 05 Jul 2019 09:03:38: 6000000 INFO @ Fri, 05 Jul 2019 09:03:43: 5000000 INFO @ Fri, 05 Jul 2019 09:03:45: 6000000 INFO @ Fri, 05 Jul 2019 09:03:47: 7000000 INFO @ Fri, 05 Jul 2019 09:03:53: 7000000 INFO @ Fri, 05 Jul 2019 09:03:53: 6000000 INFO @ Fri, 05 Jul 2019 09:03:57: 8000000 INFO @ Fri, 05 Jul 2019 09:04:01: 8000000 INFO @ Fri, 05 Jul 2019 09:04:02: 7000000 INFO @ Fri, 05 Jul 2019 09:04:06: 9000000 INFO @ Fri, 05 Jul 2019 09:04:09: 9000000 INFO @ Fri, 05 Jul 2019 09:04:11: 8000000 INFO @ Fri, 05 Jul 2019 09:04:16: 10000000 INFO @ Fri, 05 Jul 2019 09:04:17: 10000000 INFO @ Fri, 05 Jul 2019 09:04:20: 9000000 INFO @ Fri, 05 Jul 2019 09:04:25: 11000000 INFO @ Fri, 05 Jul 2019 09:04:26: 11000000 INFO @ Fri, 05 Jul 2019 09:04:30: 10000000 INFO @ Fri, 05 Jul 2019 09:04:33: 12000000 INFO @ Fri, 05 Jul 2019 09:04:36: 12000000 INFO @ Fri, 05 Jul 2019 09:04:39: 11000000 INFO @ Fri, 05 Jul 2019 09:04:42: 13000000 INFO @ Fri, 05 Jul 2019 09:04:45: 13000000 INFO @ Fri, 05 Jul 2019 09:04:48: 12000000 INFO @ Fri, 05 Jul 2019 09:04:50: 14000000 INFO @ Fri, 05 Jul 2019 09:04:55: 14000000 INFO @ Fri, 05 Jul 2019 09:04:56: 13000000 INFO @ Fri, 05 Jul 2019 09:04:58: 15000000 INFO @ Fri, 05 Jul 2019 09:05:04: 14000000 INFO @ Fri, 05 Jul 2019 09:05:04: 15000000 INFO @ Fri, 05 Jul 2019 09:05:06: 16000000 INFO @ Fri, 05 Jul 2019 09:05:12: 15000000 INFO @ Fri, 05 Jul 2019 09:05:14: 17000000 INFO @ Fri, 05 Jul 2019 09:05:14: 16000000 INFO @ Fri, 05 Jul 2019 09:05:22: 16000000 INFO @ Fri, 05 Jul 2019 09:05:23: 18000000 INFO @ Fri, 05 Jul 2019 09:05:25: 17000000 INFO @ Fri, 05 Jul 2019 09:05:31: 19000000 INFO @ Fri, 05 Jul 2019 09:05:32: 17000000 INFO @ Fri, 05 Jul 2019 09:05:35: 18000000 INFO @ Fri, 05 Jul 2019 09:05:39: 20000000 INFO @ Fri, 05 Jul 2019 09:05:42: 18000000 INFO @ Fri, 05 Jul 2019 09:05:45: 19000000 INFO @ Fri, 05 Jul 2019 09:05:48: 21000000 INFO @ Fri, 05 Jul 2019 09:05:52: 19000000 INFO @ Fri, 05 Jul 2019 09:05:55: 20000000 INFO @ Fri, 05 Jul 2019 09:05:56: 22000000 INFO @ Fri, 05 Jul 2019 09:06:02: 20000000 INFO @ Fri, 05 Jul 2019 09:06:05: 23000000 INFO @ Fri, 05 Jul 2019 09:06:06: 21000000 INFO @ Fri, 05 Jul 2019 09:06:11: 21000000 INFO @ Fri, 05 Jul 2019 09:06:13: 24000000 INFO @ Fri, 05 Jul 2019 09:06:16: 22000000 INFO @ Fri, 05 Jul 2019 09:06:22: 25000000 INFO @ Fri, 05 Jul 2019 09:06:22: 22000000 INFO @ Fri, 05 Jul 2019 09:06:27: 23000000 INFO @ Fri, 05 Jul 2019 09:06:30: 26000000 INFO @ Fri, 05 Jul 2019 09:06:31: 23000000 INFO @ Fri, 05 Jul 2019 09:06:37: 24000000 INFO @ Fri, 05 Jul 2019 09:06:38: 27000000 INFO @ Fri, 05 Jul 2019 09:06:40: 24000000 INFO @ Fri, 05 Jul 2019 09:06:46: 28000000 INFO @ Fri, 05 Jul 2019 09:06:47: 25000000 INFO @ Fri, 05 Jul 2019 09:06:49: 25000000 INFO @ Fri, 05 Jul 2019 09:06:55: 29000000 INFO @ Fri, 05 Jul 2019 09:06:57: 26000000 INFO @ Fri, 05 Jul 2019 09:06:57: 26000000 INFO @ Fri, 05 Jul 2019 09:07:03: 30000000 INFO @ Fri, 05 Jul 2019 09:07:05: 27000000 INFO @ Fri, 05 Jul 2019 09:07:07: 27000000 INFO @ Fri, 05 Jul 2019 09:07:11: 31000000 INFO @ Fri, 05 Jul 2019 09:07:14: 28000000 INFO @ Fri, 05 Jul 2019 09:07:17: 28000000 INFO @ Fri, 05 Jul 2019 09:07:19: 32000000 INFO @ Fri, 05 Jul 2019 09:07:22: 29000000 INFO @ Fri, 05 Jul 2019 09:07:26: 29000000 INFO @ Fri, 05 Jul 2019 09:07:27: 33000000 INFO @ Fri, 05 Jul 2019 09:07:31: 30000000 INFO @ Fri, 05 Jul 2019 09:07:36: 34000000 INFO @ Fri, 05 Jul 2019 09:07:36: 30000000 INFO @ Fri, 05 Jul 2019 09:07:39: 31000000 INFO @ Fri, 05 Jul 2019 09:07:44: 35000000 INFO @ Fri, 05 Jul 2019 09:07:46: 31000000 INFO @ Fri, 05 Jul 2019 09:07:48: 32000000 INFO @ Fri, 05 Jul 2019 09:07:52: 36000000 INFO @ Fri, 05 Jul 2019 09:07:56: 32000000 INFO @ Fri, 05 Jul 2019 09:07:56: 33000000 INFO @ Fri, 05 Jul 2019 09:08:00: 37000000 INFO @ Fri, 05 Jul 2019 09:08:05: 34000000 INFO @ Fri, 05 Jul 2019 09:08:06: 33000000 INFO @ Fri, 05 Jul 2019 09:08:09: 38000000 INFO @ Fri, 05 Jul 2019 09:08:14: 35000000 INFO @ Fri, 05 Jul 2019 09:08:16: 34000000 INFO @ Fri, 05 Jul 2019 09:08:17: 39000000 INFO @ Fri, 05 Jul 2019 09:08:23: 36000000 INFO @ Fri, 05 Jul 2019 09:08:25: 40000000 INFO @ Fri, 05 Jul 2019 09:08:26: 35000000 INFO @ Fri, 05 Jul 2019 09:08:32: 37000000 INFO @ Fri, 05 Jul 2019 09:08:33: 41000000 INFO @ Fri, 05 Jul 2019 09:08:36: 36000000 INFO @ Fri, 05 Jul 2019 09:08:40: 38000000 INFO @ Fri, 05 Jul 2019 09:08:41: 42000000 INFO @ Fri, 05 Jul 2019 09:08:46: 37000000 INFO @ Fri, 05 Jul 2019 09:08:48: 39000000 INFO @ Fri, 05 Jul 2019 09:08:49: 43000000 INFO @ Fri, 05 Jul 2019 09:08:55: 38000000 INFO @ Fri, 05 Jul 2019 09:08:57: 40000000 INFO @ Fri, 05 Jul 2019 09:08:57: 44000000 INFO @ Fri, 05 Jul 2019 09:09:05: 39000000 INFO @ Fri, 05 Jul 2019 09:09:05: 41000000 INFO @ Fri, 05 Jul 2019 09:09:05: 45000000 INFO @ Fri, 05 Jul 2019 09:09:14: 42000000 INFO @ Fri, 05 Jul 2019 09:09:14: 46000000 INFO @ Fri, 05 Jul 2019 09:09:15: 40000000 INFO @ Fri, 05 Jul 2019 09:09:22: 47000000 INFO @ Fri, 05 Jul 2019 09:09:22: 43000000 INFO @ Fri, 05 Jul 2019 09:09:24: 41000000 INFO @ Fri, 05 Jul 2019 09:09:30: 48000000 INFO @ Fri, 05 Jul 2019 09:09:31: 44000000 INFO @ Fri, 05 Jul 2019 09:09:34: 42000000 INFO @ Fri, 05 Jul 2019 09:09:38: 49000000 INFO @ Fri, 05 Jul 2019 09:09:39: 45000000 INFO @ Fri, 05 Jul 2019 09:09:44: 43000000 INFO @ Fri, 05 Jul 2019 09:09:46: 50000000 INFO @ Fri, 05 Jul 2019 09:09:49: 46000000 INFO @ Fri, 05 Jul 2019 09:09:54: 51000000 INFO @ Fri, 05 Jul 2019 09:09:54: 44000000 INFO @ Fri, 05 Jul 2019 09:09:57: 47000000 INFO @ Fri, 05 Jul 2019 09:10:02: 52000000 INFO @ Fri, 05 Jul 2019 09:10:04: 45000000 INFO @ Fri, 05 Jul 2019 09:10:05: 48000000 INFO @ Fri, 05 Jul 2019 09:10:10: 53000000 INFO @ Fri, 05 Jul 2019 09:10:12: 46000000 INFO @ Fri, 05 Jul 2019 09:10:13: 49000000 INFO @ Fri, 05 Jul 2019 09:10:18: 54000000 INFO @ Fri, 05 Jul 2019 09:10:21: 50000000 INFO @ Fri, 05 Jul 2019 09:10:22: 47000000 INFO @ Fri, 05 Jul 2019 09:10:26: 55000000 INFO @ Fri, 05 Jul 2019 09:10:29: 51000000 INFO @ Fri, 05 Jul 2019 09:10:31: 48000000 INFO @ Fri, 05 Jul 2019 09:10:34: 56000000 INFO @ Fri, 05 Jul 2019 09:10:37: 52000000 INFO @ Fri, 05 Jul 2019 09:10:41: 49000000 INFO @ Fri, 05 Jul 2019 09:10:43: 57000000 INFO @ Fri, 05 Jul 2019 09:10:45: 53000000 INFO @ Fri, 05 Jul 2019 09:10:50: 50000000 INFO @ Fri, 05 Jul 2019 09:10:51: 58000000 INFO @ Fri, 05 Jul 2019 09:10:53: 54000000 INFO @ Fri, 05 Jul 2019 09:10:59: 59000000 INFO @ Fri, 05 Jul 2019 09:11:00: 51000000 INFO @ Fri, 05 Jul 2019 09:11:01: 55000000 INFO @ Fri, 05 Jul 2019 09:11:07: 60000000 INFO @ Fri, 05 Jul 2019 09:11:09: 52000000 INFO @ Fri, 05 Jul 2019 09:11:09: 56000000 INFO @ Fri, 05 Jul 2019 09:11:15: 61000000 INFO @ Fri, 05 Jul 2019 09:11:17: 57000000 INFO @ Fri, 05 Jul 2019 09:11:19: 53000000 INFO @ Fri, 05 Jul 2019 09:11:24: 62000000 INFO @ Fri, 05 Jul 2019 09:11:26: 58000000 INFO @ Fri, 05 Jul 2019 09:11:28: 54000000 INFO @ Fri, 05 Jul 2019 09:11:32: 63000000 INFO @ Fri, 05 Jul 2019 09:11:34: 59000000 INFO @ Fri, 05 Jul 2019 09:11:38: 55000000 INFO @ Fri, 05 Jul 2019 09:11:40: 64000000 INFO @ Fri, 05 Jul 2019 09:11:42: 60000000 INFO @ Fri, 05 Jul 2019 09:11:47: 56000000 INFO @ Fri, 05 Jul 2019 09:11:48: 65000000 INFO @ Fri, 05 Jul 2019 09:11:50: 61000000 INFO @ Fri, 05 Jul 2019 09:11:56: 66000000 INFO @ Fri, 05 Jul 2019 09:11:57: 57000000 INFO @ Fri, 05 Jul 2019 09:11:58: 62000000 INFO @ Fri, 05 Jul 2019 09:12:04: 67000000 INFO @ Fri, 05 Jul 2019 09:12:06: 63000000 INFO @ Fri, 05 Jul 2019 09:12:07: 58000000 INFO @ Fri, 05 Jul 2019 09:12:12: 68000000 INFO @ Fri, 05 Jul 2019 09:12:14: 64000000 INFO @ Fri, 05 Jul 2019 09:12:17: 59000000 INFO @ Fri, 05 Jul 2019 09:12:20: 69000000 INFO @ Fri, 05 Jul 2019 09:12:22: 65000000 INFO @ Fri, 05 Jul 2019 09:12:26: 60000000 INFO @ Fri, 05 Jul 2019 09:12:28: 70000000 INFO @ Fri, 05 Jul 2019 09:12:30: 66000000 INFO @ Fri, 05 Jul 2019 09:12:36: 61000000 INFO @ Fri, 05 Jul 2019 09:12:36: 71000000 INFO @ Fri, 05 Jul 2019 09:12:38: 67000000 INFO @ Fri, 05 Jul 2019 09:12:39: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:12:39: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:12:39: #1 total tags in treatment: 71273904 INFO @ Fri, 05 Jul 2019 09:12:39: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:12:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:12:41: #1 tags after filtering in treatment: 71273779 INFO @ Fri, 05 Jul 2019 09:12:41: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:12:41: #1 finished! INFO @ Fri, 05 Jul 2019 09:12:41: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:12:41: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:12:45: 62000000 INFO @ Fri, 05 Jul 2019 09:12:46: 68000000 INFO @ Fri, 05 Jul 2019 09:12:53: 69000000 INFO @ Fri, 05 Jul 2019 09:12:54: 63000000 INFO @ Fri, 05 Jul 2019 09:12:54: #2 number of paired peaks: 118472 INFO @ Fri, 05 Jul 2019 09:12:54: start model_add_line... INFO @ Fri, 05 Jul 2019 09:12:56: start X-correlation... INFO @ Fri, 05 Jul 2019 09:12:56: end of X-cor INFO @ Fri, 05 Jul 2019 09:12:56: #2 finished! INFO @ Fri, 05 Jul 2019 09:12:56: #2 predicted fragment length is 143 bps INFO @ Fri, 05 Jul 2019 09:12:56: #2 alternative fragment length(s) may be 1,143 bps INFO @ Fri, 05 Jul 2019 09:12:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.10_model.r INFO @ Fri, 05 Jul 2019 09:12:56: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:12:56: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:13:01: 70000000 INFO @ Fri, 05 Jul 2019 09:13:04: 64000000 INFO @ Fri, 05 Jul 2019 09:13:09: 71000000 INFO @ Fri, 05 Jul 2019 09:13:12: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:13:12: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:13:12: #1 total tags in treatment: 71273904 INFO @ Fri, 05 Jul 2019 09:13:12: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:13:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:13:13: 65000000 INFO @ Fri, 05 Jul 2019 09:13:14: #1 tags after filtering in treatment: 71273779 INFO @ Fri, 05 Jul 2019 09:13:14: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:13:14: #1 finished! INFO @ Fri, 05 Jul 2019 09:13:14: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:13:14: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:13:22: 66000000 INFO @ Fri, 05 Jul 2019 09:13:28: #2 number of paired peaks: 118472 INFO @ Fri, 05 Jul 2019 09:13:28: start model_add_line... INFO @ Fri, 05 Jul 2019 09:13:29: start X-correlation... INFO @ Fri, 05 Jul 2019 09:13:29: end of X-cor INFO @ Fri, 05 Jul 2019 09:13:29: #2 finished! INFO @ Fri, 05 Jul 2019 09:13:29: #2 predicted fragment length is 143 bps INFO @ Fri, 05 Jul 2019 09:13:29: #2 alternative fragment length(s) may be 1,143 bps INFO @ Fri, 05 Jul 2019 09:13:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.20_model.r INFO @ Fri, 05 Jul 2019 09:13:32: 67000000 INFO @ Fri, 05 Jul 2019 09:13:37: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:13:37: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:13:41: 68000000 INFO @ Fri, 05 Jul 2019 09:13:50: 69000000 INFO @ Fri, 05 Jul 2019 09:13:59: 70000000 INFO @ Fri, 05 Jul 2019 09:14:09: 71000000 INFO @ Fri, 05 Jul 2019 09:14:12: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:14:12: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:14:12: #1 total tags in treatment: 71273904 INFO @ Fri, 05 Jul 2019 09:14:12: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:14:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:14:14: #1 tags after filtering in treatment: 71273779 INFO @ Fri, 05 Jul 2019 09:14:14: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:14:14: #1 finished! INFO @ Fri, 05 Jul 2019 09:14:14: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:14:14: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:14:27: #2 number of paired peaks: 118472 INFO @ Fri, 05 Jul 2019 09:14:27: start model_add_line... INFO @ Fri, 05 Jul 2019 09:14:29: start X-correlation... INFO @ Fri, 05 Jul 2019 09:14:29: end of X-cor INFO @ Fri, 05 Jul 2019 09:14:29: #2 finished! INFO @ Fri, 05 Jul 2019 09:14:29: #2 predicted fragment length is 143 bps INFO @ Fri, 05 Jul 2019 09:14:29: #2 alternative fragment length(s) may be 1,143 bps INFO @ Fri, 05 Jul 2019 09:14:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.05_model.r INFO @ Fri, 05 Jul 2019 09:14:29: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:14:29: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:16:26: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:17:05: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:18:01: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:18:14: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:18:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:18:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.10_summits.bed INFO @ Fri, 05 Jul 2019 09:18:14: Done! pass1 - making usageList (50 chroms): 2 millis pass2 - checking and writing primary data (1539 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:18:53: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:18:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:18:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.20_summits.bed INFO @ Fri, 05 Jul 2019 09:18:53: Done! pass1 - making usageList (28 chroms): 2 millis pass2 - checking and writing primary data (222 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:19:53: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:19:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:19:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101953/ERX101953.05_summits.bed INFO @ Fri, 05 Jul 2019 09:19:53: Done! pass1 - making usageList (99 chroms): 3 millis pass2 - checking and writing primary data (9051 records, 4 fields): 24 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。