Job ID = 2001610 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T21:03:22 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 107,850,884 reads read : 107,850,884 reads written : 107,850,884 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:34:55 107850884 reads; of these: 107850884 (100.00%) were unpaired; of these: 1648940 (1.53%) aligned 0 times 88132697 (81.72%) aligned exactly 1 time 18069247 (16.75%) aligned >1 times 98.47% overall alignment rate Time searching: 01:34:58 Overall time: 01:34:58 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 44 files... [bam_rmdupse_core] 29420827 / 106201944 = 0.2770 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 08:58:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:58:58: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:58:58: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:58:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:58:58: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:58:58: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:59:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:59:00: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:59:00: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:59:07: 1000000 INFO @ Fri, 05 Jul 2019 08:59:07: 1000000 INFO @ Fri, 05 Jul 2019 08:59:07: 1000000 INFO @ Fri, 05 Jul 2019 08:59:14: 2000000 INFO @ Fri, 05 Jul 2019 08:59:15: 2000000 INFO @ Fri, 05 Jul 2019 08:59:15: 2000000 INFO @ Fri, 05 Jul 2019 08:59:21: 3000000 INFO @ Fri, 05 Jul 2019 08:59:23: 3000000 INFO @ Fri, 05 Jul 2019 08:59:23: 3000000 INFO @ Fri, 05 Jul 2019 08:59:27: 4000000 INFO @ Fri, 05 Jul 2019 08:59:31: 4000000 INFO @ Fri, 05 Jul 2019 08:59:31: 4000000 INFO @ Fri, 05 Jul 2019 08:59:34: 5000000 INFO @ Fri, 05 Jul 2019 08:59:39: 5000000 INFO @ Fri, 05 Jul 2019 08:59:39: 5000000 INFO @ Fri, 05 Jul 2019 08:59:41: 6000000 INFO @ Fri, 05 Jul 2019 08:59:47: 6000000 INFO @ Fri, 05 Jul 2019 08:59:47: 6000000 INFO @ Fri, 05 Jul 2019 08:59:48: 7000000 INFO @ Fri, 05 Jul 2019 08:59:55: 8000000 INFO @ Fri, 05 Jul 2019 08:59:55: 7000000 INFO @ Fri, 05 Jul 2019 08:59:55: 7000000 INFO @ Fri, 05 Jul 2019 09:00:01: 9000000 INFO @ Fri, 05 Jul 2019 09:00:03: 8000000 INFO @ Fri, 05 Jul 2019 09:00:03: 8000000 INFO @ Fri, 05 Jul 2019 09:00:08: 10000000 INFO @ Fri, 05 Jul 2019 09:00:11: 9000000 INFO @ Fri, 05 Jul 2019 09:00:11: 9000000 INFO @ Fri, 05 Jul 2019 09:00:15: 11000000 INFO @ Fri, 05 Jul 2019 09:00:19: 10000000 INFO @ Fri, 05 Jul 2019 09:00:19: 10000000 INFO @ Fri, 05 Jul 2019 09:00:21: 12000000 INFO @ Fri, 05 Jul 2019 09:00:27: 11000000 INFO @ Fri, 05 Jul 2019 09:00:27: 11000000 INFO @ Fri, 05 Jul 2019 09:00:28: 13000000 INFO @ Fri, 05 Jul 2019 09:00:34: 14000000 INFO @ Fri, 05 Jul 2019 09:00:35: 12000000 INFO @ Fri, 05 Jul 2019 09:00:35: 12000000 INFO @ Fri, 05 Jul 2019 09:00:41: 15000000 INFO @ Fri, 05 Jul 2019 09:00:43: 13000000 INFO @ Fri, 05 Jul 2019 09:00:43: 13000000 INFO @ Fri, 05 Jul 2019 09:00:47: 16000000 INFO @ Fri, 05 Jul 2019 09:00:51: 14000000 INFO @ Fri, 05 Jul 2019 09:00:51: 14000000 INFO @ Fri, 05 Jul 2019 09:00:54: 17000000 INFO @ Fri, 05 Jul 2019 09:00:59: 15000000 INFO @ Fri, 05 Jul 2019 09:00:59: 15000000 INFO @ Fri, 05 Jul 2019 09:01:01: 18000000 INFO @ Fri, 05 Jul 2019 09:01:07: 16000000 INFO @ Fri, 05 Jul 2019 09:01:07: 19000000 INFO @ Fri, 05 Jul 2019 09:01:07: 16000000 INFO @ Fri, 05 Jul 2019 09:01:14: 20000000 INFO @ Fri, 05 Jul 2019 09:01:15: 17000000 INFO @ Fri, 05 Jul 2019 09:01:15: 17000000 INFO @ Fri, 05 Jul 2019 09:01:20: 21000000 INFO @ Fri, 05 Jul 2019 09:01:23: 18000000 INFO @ Fri, 05 Jul 2019 09:01:24: 18000000 INFO @ Fri, 05 Jul 2019 09:01:27: 22000000 INFO @ Fri, 05 Jul 2019 09:01:31: 19000000 INFO @ Fri, 05 Jul 2019 09:01:32: 19000000 INFO @ Fri, 05 Jul 2019 09:01:34: 23000000 INFO @ Fri, 05 Jul 2019 09:01:39: 20000000 INFO @ Fri, 05 Jul 2019 09:01:40: 20000000 INFO @ Fri, 05 Jul 2019 09:01:40: 24000000 INFO @ Fri, 05 Jul 2019 09:01:47: 21000000 INFO @ Fri, 05 Jul 2019 09:01:47: 25000000 INFO @ Fri, 05 Jul 2019 09:01:48: 21000000 INFO @ Fri, 05 Jul 2019 09:01:54: 26000000 INFO @ Fri, 05 Jul 2019 09:01:55: 22000000 INFO @ Fri, 05 Jul 2019 09:01:55: 22000000 INFO @ Fri, 05 Jul 2019 09:02:01: 27000000 INFO @ Fri, 05 Jul 2019 09:02:03: 23000000 INFO @ Fri, 05 Jul 2019 09:02:04: 23000000 INFO @ Fri, 05 Jul 2019 09:02:07: 28000000 INFO @ Fri, 05 Jul 2019 09:02:11: 24000000 INFO @ Fri, 05 Jul 2019 09:02:12: 24000000 INFO @ Fri, 05 Jul 2019 09:02:14: 29000000 INFO @ Fri, 05 Jul 2019 09:02:19: 25000000 INFO @ Fri, 05 Jul 2019 09:02:20: 25000000 INFO @ Fri, 05 Jul 2019 09:02:20: 30000000 INFO @ Fri, 05 Jul 2019 09:02:27: 26000000 INFO @ Fri, 05 Jul 2019 09:02:27: 31000000 INFO @ Fri, 05 Jul 2019 09:02:28: 26000000 INFO @ Fri, 05 Jul 2019 09:02:34: 32000000 INFO @ Fri, 05 Jul 2019 09:02:35: 27000000 INFO @ Fri, 05 Jul 2019 09:02:36: 27000000 INFO @ Fri, 05 Jul 2019 09:02:40: 33000000 INFO @ Fri, 05 Jul 2019 09:02:43: 28000000 INFO @ Fri, 05 Jul 2019 09:02:44: 28000000 INFO @ Fri, 05 Jul 2019 09:02:47: 34000000 INFO @ Fri, 05 Jul 2019 09:02:51: 29000000 INFO @ Fri, 05 Jul 2019 09:02:52: 29000000 INFO @ Fri, 05 Jul 2019 09:02:53: 35000000 INFO @ Fri, 05 Jul 2019 09:02:59: 30000000 INFO @ Fri, 05 Jul 2019 09:02:59: 36000000 INFO @ Fri, 05 Jul 2019 09:03:00: 30000000 INFO @ Fri, 05 Jul 2019 09:03:06: 37000000 INFO @ Fri, 05 Jul 2019 09:03:06: 31000000 INFO @ Fri, 05 Jul 2019 09:03:08: 31000000 INFO @ Fri, 05 Jul 2019 09:03:12: 38000000 INFO @ Fri, 05 Jul 2019 09:03:14: 32000000 INFO @ Fri, 05 Jul 2019 09:03:16: 32000000 INFO @ Fri, 05 Jul 2019 09:03:19: 39000000 INFO @ Fri, 05 Jul 2019 09:03:22: 33000000 INFO @ Fri, 05 Jul 2019 09:03:24: 33000000 INFO @ Fri, 05 Jul 2019 09:03:26: 40000000 INFO @ Fri, 05 Jul 2019 09:03:30: 34000000 INFO @ Fri, 05 Jul 2019 09:03:32: 34000000 INFO @ Fri, 05 Jul 2019 09:03:32: 41000000 INFO @ Fri, 05 Jul 2019 09:03:38: 35000000 INFO @ Fri, 05 Jul 2019 09:03:39: 42000000 INFO @ Fri, 05 Jul 2019 09:03:39: 35000000 INFO @ Fri, 05 Jul 2019 09:03:46: 43000000 INFO @ Fri, 05 Jul 2019 09:03:46: 36000000 INFO @ Fri, 05 Jul 2019 09:03:47: 36000000 INFO @ Fri, 05 Jul 2019 09:03:52: 44000000 INFO @ Fri, 05 Jul 2019 09:03:54: 37000000 INFO @ Fri, 05 Jul 2019 09:03:55: 37000000 INFO @ Fri, 05 Jul 2019 09:03:59: 45000000 INFO @ Fri, 05 Jul 2019 09:04:02: 38000000 INFO @ Fri, 05 Jul 2019 09:04:04: 38000000 INFO @ Fri, 05 Jul 2019 09:04:06: 46000000 INFO @ Fri, 05 Jul 2019 09:04:10: 39000000 INFO @ Fri, 05 Jul 2019 09:04:12: 39000000 INFO @ Fri, 05 Jul 2019 09:04:13: 47000000 INFO @ Fri, 05 Jul 2019 09:04:18: 40000000 INFO @ Fri, 05 Jul 2019 09:04:20: 40000000 INFO @ Fri, 05 Jul 2019 09:04:20: 48000000 INFO @ Fri, 05 Jul 2019 09:04:26: 41000000 INFO @ Fri, 05 Jul 2019 09:04:26: 49000000 INFO @ Fri, 05 Jul 2019 09:04:28: 41000000 INFO @ Fri, 05 Jul 2019 09:04:33: 50000000 INFO @ Fri, 05 Jul 2019 09:04:34: 42000000 INFO @ Fri, 05 Jul 2019 09:04:36: 42000000 INFO @ Fri, 05 Jul 2019 09:04:39: 51000000 INFO @ Fri, 05 Jul 2019 09:04:42: 43000000 INFO @ Fri, 05 Jul 2019 09:04:44: 43000000 INFO @ Fri, 05 Jul 2019 09:04:46: 52000000 INFO @ Fri, 05 Jul 2019 09:04:50: 44000000 INFO @ Fri, 05 Jul 2019 09:04:52: 44000000 INFO @ Fri, 05 Jul 2019 09:04:52: 53000000 INFO @ Fri, 05 Jul 2019 09:04:58: 45000000 INFO @ Fri, 05 Jul 2019 09:04:59: 54000000 INFO @ Fri, 05 Jul 2019 09:05:00: 45000000 INFO @ Fri, 05 Jul 2019 09:05:05: 55000000 INFO @ Fri, 05 Jul 2019 09:05:06: 46000000 INFO @ Fri, 05 Jul 2019 09:05:08: 46000000 INFO @ Fri, 05 Jul 2019 09:05:12: 56000000 INFO @ Fri, 05 Jul 2019 09:05:14: 47000000 INFO @ Fri, 05 Jul 2019 09:05:16: 47000000 INFO @ Fri, 05 Jul 2019 09:05:18: 57000000 INFO @ Fri, 05 Jul 2019 09:05:22: 48000000 INFO @ Fri, 05 Jul 2019 09:05:24: 48000000 INFO @ Fri, 05 Jul 2019 09:05:25: 58000000 INFO @ Fri, 05 Jul 2019 09:05:30: 49000000 INFO @ Fri, 05 Jul 2019 09:05:32: 59000000 INFO @ Fri, 05 Jul 2019 09:05:32: 49000000 INFO @ Fri, 05 Jul 2019 09:05:38: 50000000 INFO @ Fri, 05 Jul 2019 09:05:38: 60000000 INFO @ Fri, 05 Jul 2019 09:05:40: 50000000 INFO @ Fri, 05 Jul 2019 09:05:45: 61000000 INFO @ Fri, 05 Jul 2019 09:05:46: 51000000 INFO @ Fri, 05 Jul 2019 09:05:48: 51000000 INFO @ Fri, 05 Jul 2019 09:05:52: 62000000 INFO @ Fri, 05 Jul 2019 09:05:54: 52000000 INFO @ Fri, 05 Jul 2019 09:05:56: 52000000 INFO @ Fri, 05 Jul 2019 09:05:59: 63000000 INFO @ Fri, 05 Jul 2019 09:06:02: 53000000 INFO @ Fri, 05 Jul 2019 09:06:04: 53000000 INFO @ Fri, 05 Jul 2019 09:06:06: 64000000 INFO @ Fri, 05 Jul 2019 09:06:10: 54000000 INFO @ Fri, 05 Jul 2019 09:06:12: 54000000 INFO @ Fri, 05 Jul 2019 09:06:13: 65000000 INFO @ Fri, 05 Jul 2019 09:06:18: 55000000 INFO @ Fri, 05 Jul 2019 09:06:19: 66000000 INFO @ Fri, 05 Jul 2019 09:06:20: 55000000 INFO @ Fri, 05 Jul 2019 09:06:26: 56000000 INFO @ Fri, 05 Jul 2019 09:06:26: 67000000 INFO @ Fri, 05 Jul 2019 09:06:28: 56000000 INFO @ Fri, 05 Jul 2019 09:06:32: 68000000 INFO @ Fri, 05 Jul 2019 09:06:34: 57000000 INFO @ Fri, 05 Jul 2019 09:06:36: 57000000 INFO @ Fri, 05 Jul 2019 09:06:39: 69000000 INFO @ Fri, 05 Jul 2019 09:06:42: 58000000 INFO @ Fri, 05 Jul 2019 09:06:45: 58000000 INFO @ Fri, 05 Jul 2019 09:06:45: 70000000 INFO @ Fri, 05 Jul 2019 09:06:50: 59000000 INFO @ Fri, 05 Jul 2019 09:06:52: 71000000 INFO @ Fri, 05 Jul 2019 09:06:53: 59000000 INFO @ Fri, 05 Jul 2019 09:06:58: 60000000 INFO @ Fri, 05 Jul 2019 09:06:58: 72000000 INFO @ Fri, 05 Jul 2019 09:07:01: 60000000 INFO @ Fri, 05 Jul 2019 09:07:05: 73000000 INFO @ Fri, 05 Jul 2019 09:07:06: 61000000 INFO @ Fri, 05 Jul 2019 09:07:09: 61000000 INFO @ Fri, 05 Jul 2019 09:07:12: 74000000 INFO @ Fri, 05 Jul 2019 09:07:14: 62000000 INFO @ Fri, 05 Jul 2019 09:07:17: 62000000 INFO @ Fri, 05 Jul 2019 09:07:19: 75000000 INFO @ Fri, 05 Jul 2019 09:07:22: 63000000 INFO @ Fri, 05 Jul 2019 09:07:25: 63000000 INFO @ Fri, 05 Jul 2019 09:07:25: 76000000 INFO @ Fri, 05 Jul 2019 09:07:30: 64000000 INFO @ Fri, 05 Jul 2019 09:07:31: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:07:31: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:07:31: #1 total tags in treatment: 76781117 INFO @ Fri, 05 Jul 2019 09:07:31: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:07:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:07:33: 64000000 INFO @ Fri, 05 Jul 2019 09:07:33: #1 tags after filtering in treatment: 76781026 INFO @ Fri, 05 Jul 2019 09:07:33: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:07:33: #1 finished! INFO @ Fri, 05 Jul 2019 09:07:33: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:07:33: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:07:38: 65000000 INFO @ Fri, 05 Jul 2019 09:07:41: 65000000 INFO @ Fri, 05 Jul 2019 09:07:45: 66000000 INFO @ Fri, 05 Jul 2019 09:07:46: #2 number of paired peaks: 86530 INFO @ Fri, 05 Jul 2019 09:07:46: start model_add_line... INFO @ Fri, 05 Jul 2019 09:07:47: start X-correlation... INFO @ Fri, 05 Jul 2019 09:07:47: end of X-cor INFO @ Fri, 05 Jul 2019 09:07:47: #2 finished! INFO @ Fri, 05 Jul 2019 09:07:47: #2 predicted fragment length is 102 bps INFO @ Fri, 05 Jul 2019 09:07:47: #2 alternative fragment length(s) may be 4,102 bps INFO @ Fri, 05 Jul 2019 09:07:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.20_model.r INFO @ Fri, 05 Jul 2019 09:07:47: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:07:47: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:07:49: 66000000 INFO @ Fri, 05 Jul 2019 09:07:53: 67000000 INFO @ Fri, 05 Jul 2019 09:07:57: 67000000 INFO @ Fri, 05 Jul 2019 09:08:01: 68000000 INFO @ Fri, 05 Jul 2019 09:08:05: 68000000 INFO @ Fri, 05 Jul 2019 09:08:09: 69000000 INFO @ Fri, 05 Jul 2019 09:08:13: 69000000 INFO @ Fri, 05 Jul 2019 09:08:17: 70000000 INFO @ Fri, 05 Jul 2019 09:08:21: 70000000 INFO @ Fri, 05 Jul 2019 09:08:25: 71000000 INFO @ Fri, 05 Jul 2019 09:08:29: 71000000 INFO @ Fri, 05 Jul 2019 09:08:33: 72000000 INFO @ Fri, 05 Jul 2019 09:08:37: 72000000 INFO @ Fri, 05 Jul 2019 09:08:41: 73000000 INFO @ Fri, 05 Jul 2019 09:08:45: 73000000 INFO @ Fri, 05 Jul 2019 09:08:49: 74000000 INFO @ Fri, 05 Jul 2019 09:08:53: 74000000 INFO @ Fri, 05 Jul 2019 09:08:57: 75000000 INFO @ Fri, 05 Jul 2019 09:09:02: 75000000 INFO @ Fri, 05 Jul 2019 09:09:05: 76000000 INFO @ Fri, 05 Jul 2019 09:09:10: 76000000 INFO @ Fri, 05 Jul 2019 09:09:13: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:09:13: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:09:13: #1 total tags in treatment: 76781117 INFO @ Fri, 05 Jul 2019 09:09:13: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:09:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:09:14: #1 tags after filtering in treatment: 76781026 INFO @ Fri, 05 Jul 2019 09:09:14: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:09:14: #1 finished! INFO @ Fri, 05 Jul 2019 09:09:14: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:09:14: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:09:17: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:09:17: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:09:17: #1 total tags in treatment: 76781117 INFO @ Fri, 05 Jul 2019 09:09:17: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:09:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:09:19: #1 tags after filtering in treatment: 76781026 INFO @ Fri, 05 Jul 2019 09:09:19: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:09:19: #1 finished! INFO @ Fri, 05 Jul 2019 09:09:19: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:09:19: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:09:27: #2 number of paired peaks: 86530 INFO @ Fri, 05 Jul 2019 09:09:27: start model_add_line... INFO @ Fri, 05 Jul 2019 09:09:28: start X-correlation... INFO @ Fri, 05 Jul 2019 09:09:28: end of X-cor INFO @ Fri, 05 Jul 2019 09:09:28: #2 finished! INFO @ Fri, 05 Jul 2019 09:09:28: #2 predicted fragment length is 102 bps INFO @ Fri, 05 Jul 2019 09:09:28: #2 alternative fragment length(s) may be 4,102 bps INFO @ Fri, 05 Jul 2019 09:09:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.10_model.r INFO @ Fri, 05 Jul 2019 09:09:28: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:09:28: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:09:32: #2 number of paired peaks: 86530 INFO @ Fri, 05 Jul 2019 09:09:32: start model_add_line... INFO @ Fri, 05 Jul 2019 09:09:33: start X-correlation... INFO @ Fri, 05 Jul 2019 09:09:33: end of X-cor INFO @ Fri, 05 Jul 2019 09:09:33: #2 finished! INFO @ Fri, 05 Jul 2019 09:09:33: #2 predicted fragment length is 102 bps INFO @ Fri, 05 Jul 2019 09:09:33: #2 alternative fragment length(s) may be 4,102 bps INFO @ Fri, 05 Jul 2019 09:09:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.05_model.r INFO @ Fri, 05 Jul 2019 09:09:33: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:09:33: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:11:42: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:13:24: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:13:29: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:13:43: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:13:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:13:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.20_summits.bed INFO @ Fri, 05 Jul 2019 09:13:43: Done! pass1 - making usageList (40 chroms): 3 millis pass2 - checking and writing primary data (6542 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:15:33: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:15:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:15:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.10_summits.bed INFO @ Fri, 05 Jul 2019 09:15:34: Done! pass1 - making usageList (100 chroms): 10 millis pass2 - checking and writing primary data (47620 records, 4 fields): 59 millis INFO @ Fri, 05 Jul 2019 09:15:40: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:15:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.05_peaks.narrowPeak CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:15:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101936/ERX101936.05_summits.bed INFO @ Fri, 05 Jul 2019 09:15:43: Done! pass1 - making usageList (181 chroms): 31 millis pass2 - checking and writing primary data (136240 records, 4 fields): 204 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。