Job ID = 2001539 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T19:33:32 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:34:01 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:34:14 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:34:18 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:41:39 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:44:50 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:46:25 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:03:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 89,701,108 reads read : 89,701,108 reads written : 89,701,108 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:23:30 89701108 reads; of these: 89701108 (100.00%) were unpaired; of these: 1267945 (1.41%) aligned 0 times 75827722 (84.53%) aligned exactly 1 time 12605441 (14.05%) aligned >1 times 98.59% overall alignment rate Time searching: 01:23:32 Overall time: 01:23:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 21036563 / 88433163 = 0.2379 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 06:55:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 06:55:57: #1 read tag files... INFO @ Fri, 05 Jul 2019 06:55:57: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 06:55:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 06:55:57: #1 read tag files... INFO @ Fri, 05 Jul 2019 06:55:57: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 06:55:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 06:55:58: #1 read tag files... INFO @ Fri, 05 Jul 2019 06:55:58: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 06:56:07: 1000000 INFO @ Fri, 05 Jul 2019 06:56:08: 1000000 INFO @ Fri, 05 Jul 2019 06:56:08: 1000000 INFO @ Fri, 05 Jul 2019 06:56:17: 2000000 INFO @ Fri, 05 Jul 2019 06:56:18: 2000000 INFO @ Fri, 05 Jul 2019 06:56:18: 2000000 INFO @ Fri, 05 Jul 2019 06:56:26: 3000000 INFO @ Fri, 05 Jul 2019 06:56:27: 3000000 INFO @ Fri, 05 Jul 2019 06:56:28: 3000000 INFO @ Fri, 05 Jul 2019 06:56:34: 4000000 INFO @ Fri, 05 Jul 2019 06:56:37: 4000000 INFO @ Fri, 05 Jul 2019 06:56:38: 4000000 INFO @ Fri, 05 Jul 2019 06:56:42: 5000000 INFO @ Fri, 05 Jul 2019 06:56:48: 5000000 INFO @ Fri, 05 Jul 2019 06:56:49: 5000000 INFO @ Fri, 05 Jul 2019 06:56:51: 6000000 INFO @ Fri, 05 Jul 2019 06:56:58: 6000000 INFO @ Fri, 05 Jul 2019 06:56:59: 6000000 INFO @ Fri, 05 Jul 2019 06:56:59: 7000000 INFO @ Fri, 05 Jul 2019 06:57:08: 8000000 INFO @ Fri, 05 Jul 2019 06:57:08: 7000000 INFO @ Fri, 05 Jul 2019 06:57:09: 7000000 INFO @ Fri, 05 Jul 2019 06:57:17: 9000000 INFO @ Fri, 05 Jul 2019 06:57:18: 8000000 INFO @ Fri, 05 Jul 2019 06:57:19: 8000000 INFO @ Fri, 05 Jul 2019 06:57:25: 10000000 INFO @ Fri, 05 Jul 2019 06:57:28: 9000000 INFO @ Fri, 05 Jul 2019 06:57:29: 9000000 INFO @ Fri, 05 Jul 2019 06:57:34: 11000000 INFO @ Fri, 05 Jul 2019 06:57:37: 10000000 INFO @ Fri, 05 Jul 2019 06:57:39: 10000000 INFO @ Fri, 05 Jul 2019 06:57:42: 12000000 INFO @ Fri, 05 Jul 2019 06:57:47: 11000000 INFO @ Fri, 05 Jul 2019 06:57:49: 11000000 INFO @ Fri, 05 Jul 2019 06:57:52: 13000000 INFO @ Fri, 05 Jul 2019 06:57:57: 12000000 INFO @ Fri, 05 Jul 2019 06:57:59: 12000000 INFO @ Fri, 05 Jul 2019 06:58:00: 14000000 INFO @ Fri, 05 Jul 2019 06:58:07: 13000000 INFO @ Fri, 05 Jul 2019 06:58:09: 15000000 INFO @ Fri, 05 Jul 2019 06:58:09: 13000000 INFO @ Fri, 05 Jul 2019 06:58:17: 14000000 INFO @ Fri, 05 Jul 2019 06:58:18: 16000000 INFO @ Fri, 05 Jul 2019 06:58:19: 14000000 INFO @ Fri, 05 Jul 2019 06:58:27: 17000000 INFO @ Fri, 05 Jul 2019 06:58:27: 15000000 INFO @ Fri, 05 Jul 2019 06:58:29: 15000000 INFO @ Fri, 05 Jul 2019 06:58:36: 18000000 INFO @ Fri, 05 Jul 2019 06:58:37: 16000000 INFO @ Fri, 05 Jul 2019 06:58:39: 16000000 INFO @ Fri, 05 Jul 2019 06:58:45: 19000000 INFO @ Fri, 05 Jul 2019 06:58:48: 17000000 INFO @ Fri, 05 Jul 2019 06:58:49: 17000000 INFO @ Fri, 05 Jul 2019 06:58:53: 20000000 INFO @ Fri, 05 Jul 2019 06:58:58: 18000000 INFO @ Fri, 05 Jul 2019 06:59:00: 18000000 INFO @ Fri, 05 Jul 2019 06:59:02: 21000000 INFO @ Fri, 05 Jul 2019 06:59:07: 19000000 INFO @ Fri, 05 Jul 2019 06:59:09: 19000000 INFO @ Fri, 05 Jul 2019 06:59:10: 22000000 INFO @ Fri, 05 Jul 2019 06:59:16: 20000000 INFO @ Fri, 05 Jul 2019 06:59:19: 20000000 INFO @ Fri, 05 Jul 2019 06:59:20: 23000000 INFO @ Fri, 05 Jul 2019 06:59:24: 21000000 INFO @ Fri, 05 Jul 2019 06:59:28: 21000000 INFO @ Fri, 05 Jul 2019 06:59:28: 24000000 INFO @ Fri, 05 Jul 2019 06:59:33: 22000000 INFO @ Fri, 05 Jul 2019 06:59:37: 25000000 INFO @ Fri, 05 Jul 2019 06:59:37: 22000000 INFO @ Fri, 05 Jul 2019 06:59:43: 23000000 INFO @ Fri, 05 Jul 2019 06:59:46: 26000000 INFO @ Fri, 05 Jul 2019 06:59:47: 23000000 INFO @ Fri, 05 Jul 2019 06:59:52: 24000000 INFO @ Fri, 05 Jul 2019 06:59:55: 27000000 INFO @ Fri, 05 Jul 2019 06:59:58: 24000000 INFO @ Fri, 05 Jul 2019 07:00:02: 25000000 INFO @ Fri, 05 Jul 2019 07:00:04: 28000000 INFO @ Fri, 05 Jul 2019 07:00:08: 25000000 INFO @ Fri, 05 Jul 2019 07:00:11: 26000000 INFO @ Fri, 05 Jul 2019 07:00:12: 29000000 INFO @ Fri, 05 Jul 2019 07:00:18: 26000000 INFO @ Fri, 05 Jul 2019 07:00:20: 30000000 INFO @ Fri, 05 Jul 2019 07:00:21: 27000000 INFO @ Fri, 05 Jul 2019 07:00:27: 27000000 INFO @ Fri, 05 Jul 2019 07:00:29: 31000000 INFO @ Fri, 05 Jul 2019 07:00:29: 28000000 INFO @ Fri, 05 Jul 2019 07:00:37: 28000000 INFO @ Fri, 05 Jul 2019 07:00:37: 32000000 INFO @ Fri, 05 Jul 2019 07:00:38: 29000000 INFO @ Fri, 05 Jul 2019 07:00:45: 33000000 INFO @ Fri, 05 Jul 2019 07:00:46: 29000000 INFO @ Fri, 05 Jul 2019 07:00:46: 30000000 INFO @ Fri, 05 Jul 2019 07:00:54: 34000000 INFO @ Fri, 05 Jul 2019 07:00:55: 31000000 INFO @ Fri, 05 Jul 2019 07:00:55: 30000000 INFO @ Fri, 05 Jul 2019 07:01:02: 35000000 INFO @ Fri, 05 Jul 2019 07:01:03: 32000000 INFO @ Fri, 05 Jul 2019 07:01:05: 31000000 INFO @ Fri, 05 Jul 2019 07:01:10: 36000000 INFO @ Fri, 05 Jul 2019 07:01:12: 33000000 INFO @ Fri, 05 Jul 2019 07:01:14: 32000000 INFO @ Fri, 05 Jul 2019 07:01:19: 37000000 INFO @ Fri, 05 Jul 2019 07:01:20: 34000000 INFO @ Fri, 05 Jul 2019 07:01:22: 33000000 INFO @ Fri, 05 Jul 2019 07:01:28: 38000000 INFO @ Fri, 05 Jul 2019 07:01:28: 35000000 INFO @ Fri, 05 Jul 2019 07:01:31: 34000000 INFO @ Fri, 05 Jul 2019 07:01:37: 36000000 INFO @ Fri, 05 Jul 2019 07:01:38: 39000000 INFO @ Fri, 05 Jul 2019 07:01:40: 35000000 INFO @ Fri, 05 Jul 2019 07:01:46: 37000000 INFO @ Fri, 05 Jul 2019 07:01:46: 40000000 INFO @ Fri, 05 Jul 2019 07:01:48: 36000000 INFO @ Fri, 05 Jul 2019 07:01:54: 38000000 INFO @ Fri, 05 Jul 2019 07:01:55: 41000000 INFO @ Fri, 05 Jul 2019 07:01:57: 37000000 INFO @ Fri, 05 Jul 2019 07:02:03: 39000000 INFO @ Fri, 05 Jul 2019 07:02:03: 42000000 INFO @ Fri, 05 Jul 2019 07:02:06: 38000000 INFO @ Fri, 05 Jul 2019 07:02:12: 40000000 INFO @ Fri, 05 Jul 2019 07:02:12: 43000000 INFO @ Fri, 05 Jul 2019 07:02:15: 39000000 INFO @ Fri, 05 Jul 2019 07:02:20: 41000000 INFO @ Fri, 05 Jul 2019 07:02:21: 44000000 INFO @ Fri, 05 Jul 2019 07:02:23: 40000000 INFO @ Fri, 05 Jul 2019 07:02:29: 42000000 INFO @ Fri, 05 Jul 2019 07:02:29: 45000000 INFO @ Fri, 05 Jul 2019 07:02:32: 41000000 INFO @ Fri, 05 Jul 2019 07:02:37: 46000000 INFO @ Fri, 05 Jul 2019 07:02:37: 43000000 INFO @ Fri, 05 Jul 2019 07:02:40: 42000000 INFO @ Fri, 05 Jul 2019 07:02:45: 47000000 INFO @ Fri, 05 Jul 2019 07:02:45: 44000000 INFO @ Fri, 05 Jul 2019 07:02:49: 43000000 INFO @ Fri, 05 Jul 2019 07:02:54: 48000000 INFO @ Fri, 05 Jul 2019 07:02:54: 45000000 INFO @ Fri, 05 Jul 2019 07:02:57: 44000000 INFO @ Fri, 05 Jul 2019 07:03:02: 46000000 INFO @ Fri, 05 Jul 2019 07:03:03: 49000000 INFO @ Fri, 05 Jul 2019 07:03:05: 45000000 INFO @ Fri, 05 Jul 2019 07:03:11: 47000000 INFO @ Fri, 05 Jul 2019 07:03:12: 50000000 INFO @ Fri, 05 Jul 2019 07:03:14: 46000000 INFO @ Fri, 05 Jul 2019 07:03:20: 48000000 INFO @ Fri, 05 Jul 2019 07:03:20: 51000000 INFO @ Fri, 05 Jul 2019 07:03:23: 47000000 INFO @ Fri, 05 Jul 2019 07:03:28: 49000000 INFO @ Fri, 05 Jul 2019 07:03:29: 52000000 INFO @ Fri, 05 Jul 2019 07:03:31: 48000000 INFO @ Fri, 05 Jul 2019 07:03:37: 50000000 INFO @ Fri, 05 Jul 2019 07:03:37: 53000000 INFO @ Fri, 05 Jul 2019 07:03:39: 49000000 INFO @ Fri, 05 Jul 2019 07:03:45: 51000000 INFO @ Fri, 05 Jul 2019 07:03:45: 54000000 INFO @ Fri, 05 Jul 2019 07:03:48: 50000000 INFO @ Fri, 05 Jul 2019 07:03:54: 55000000 INFO @ Fri, 05 Jul 2019 07:03:54: 52000000 INFO @ Fri, 05 Jul 2019 07:03:56: 51000000 INFO @ Fri, 05 Jul 2019 07:04:02: 56000000 INFO @ Fri, 05 Jul 2019 07:04:02: 53000000 INFO @ Fri, 05 Jul 2019 07:04:04: 52000000 INFO @ Fri, 05 Jul 2019 07:04:11: 54000000 INFO @ Fri, 05 Jul 2019 07:04:11: 57000000 INFO @ Fri, 05 Jul 2019 07:04:13: 53000000 INFO @ Fri, 05 Jul 2019 07:04:20: 55000000 INFO @ Fri, 05 Jul 2019 07:04:20: 58000000 INFO @ Fri, 05 Jul 2019 07:04:22: 54000000 INFO @ Fri, 05 Jul 2019 07:04:28: 56000000 INFO @ Fri, 05 Jul 2019 07:04:29: 59000000 INFO @ Fri, 05 Jul 2019 07:04:31: 55000000 INFO @ Fri, 05 Jul 2019 07:04:37: 57000000 INFO @ Fri, 05 Jul 2019 07:04:37: 60000000 INFO @ Fri, 05 Jul 2019 07:04:39: 56000000 INFO @ Fri, 05 Jul 2019 07:04:45: 58000000 INFO @ Fri, 05 Jul 2019 07:04:46: 61000000 INFO @ Fri, 05 Jul 2019 07:04:47: 57000000 INFO @ Fri, 05 Jul 2019 07:04:54: 59000000 INFO @ Fri, 05 Jul 2019 07:04:55: 62000000 INFO @ Fri, 05 Jul 2019 07:04:57: 58000000 INFO @ Fri, 05 Jul 2019 07:05:03: 60000000 INFO @ Fri, 05 Jul 2019 07:05:04: 63000000 INFO @ Fri, 05 Jul 2019 07:05:06: 59000000 INFO @ Fri, 05 Jul 2019 07:05:13: 61000000 INFO @ Fri, 05 Jul 2019 07:05:13: 64000000 INFO @ Fri, 05 Jul 2019 07:05:15: 60000000 INFO @ Fri, 05 Jul 2019 07:05:21: 62000000 INFO @ Fri, 05 Jul 2019 07:05:22: 65000000 INFO @ Fri, 05 Jul 2019 07:05:24: 61000000 INFO @ Fri, 05 Jul 2019 07:05:30: 63000000 INFO @ Fri, 05 Jul 2019 07:05:31: 66000000 INFO @ Fri, 05 Jul 2019 07:05:33: 62000000 INFO @ Fri, 05 Jul 2019 07:05:39: 64000000 INFO @ Fri, 05 Jul 2019 07:05:40: 67000000 INFO @ Fri, 05 Jul 2019 07:05:41: 63000000 INFO @ Fri, 05 Jul 2019 07:05:45: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:05:45: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:05:45: #1 total tags in treatment: 67396600 INFO @ Fri, 05 Jul 2019 07:05:45: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:05:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:05:47: #1 tags after filtering in treatment: 67396483 INFO @ Fri, 05 Jul 2019 07:05:47: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:05:47: #1 finished! INFO @ Fri, 05 Jul 2019 07:05:47: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:05:47: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:05:48: 65000000 INFO @ Fri, 05 Jul 2019 07:05:50: 64000000 INFO @ Fri, 05 Jul 2019 07:05:57: 66000000 INFO @ Fri, 05 Jul 2019 07:05:58: 65000000 INFO @ Fri, 05 Jul 2019 07:06:02: #2 number of paired peaks: 131139 INFO @ Fri, 05 Jul 2019 07:06:02: start model_add_line... INFO @ Fri, 05 Jul 2019 07:06:03: start X-correlation... INFO @ Fri, 05 Jul 2019 07:06:03: end of X-cor INFO @ Fri, 05 Jul 2019 07:06:03: #2 finished! INFO @ Fri, 05 Jul 2019 07:06:03: #2 predicted fragment length is 127 bps INFO @ Fri, 05 Jul 2019 07:06:03: #2 alternative fragment length(s) may be 4,127 bps INFO @ Fri, 05 Jul 2019 07:06:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.20_model.r INFO @ Fri, 05 Jul 2019 07:06:03: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:06:03: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:06:07: 67000000 INFO @ Fri, 05 Jul 2019 07:06:07: 66000000 INFO @ Fri, 05 Jul 2019 07:06:12: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:06:12: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:06:12: #1 total tags in treatment: 67396600 INFO @ Fri, 05 Jul 2019 07:06:12: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:06:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:06:14: #1 tags after filtering in treatment: 67396483 INFO @ Fri, 05 Jul 2019 07:06:14: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:06:14: #1 finished! INFO @ Fri, 05 Jul 2019 07:06:14: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:06:14: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:06:16: 67000000 INFO @ Fri, 05 Jul 2019 07:06:20: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:06:20: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:06:20: #1 total tags in treatment: 67396600 INFO @ Fri, 05 Jul 2019 07:06:20: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:06:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:06:22: #1 tags after filtering in treatment: 67396483 INFO @ Fri, 05 Jul 2019 07:06:22: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:06:22: #1 finished! INFO @ Fri, 05 Jul 2019 07:06:22: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:06:22: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:06:29: #2 number of paired peaks: 131139 INFO @ Fri, 05 Jul 2019 07:06:29: start model_add_line... INFO @ Fri, 05 Jul 2019 07:06:30: start X-correlation... INFO @ Fri, 05 Jul 2019 07:06:30: end of X-cor INFO @ Fri, 05 Jul 2019 07:06:30: #2 finished! INFO @ Fri, 05 Jul 2019 07:06:30: #2 predicted fragment length is 127 bps INFO @ Fri, 05 Jul 2019 07:06:30: #2 alternative fragment length(s) may be 4,127 bps INFO @ Fri, 05 Jul 2019 07:06:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.10_model.r INFO @ Fri, 05 Jul 2019 07:06:30: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:06:30: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:06:37: #2 number of paired peaks: 131139 INFO @ Fri, 05 Jul 2019 07:06:37: start model_add_line... INFO @ Fri, 05 Jul 2019 07:06:39: start X-correlation... INFO @ Fri, 05 Jul 2019 07:06:39: end of X-cor INFO @ Fri, 05 Jul 2019 07:06:39: #2 finished! INFO @ Fri, 05 Jul 2019 07:06:39: #2 predicted fragment length is 127 bps INFO @ Fri, 05 Jul 2019 07:06:39: #2 alternative fragment length(s) may be 4,127 bps INFO @ Fri, 05 Jul 2019 07:06:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.05_model.r INFO @ Fri, 05 Jul 2019 07:06:39: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:06:39: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:09:57: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:10:26: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:10:27: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:12:07: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.20_peaks.xls INFO @ Fri, 05 Jul 2019 07:12:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:12:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.20_summits.bed INFO @ Fri, 05 Jul 2019 07:12:07: Done! pass1 - making usageList (45 chroms): 5 millis pass2 - checking and writing primary data (9082 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:12:28: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.10_peaks.xls INFO @ Fri, 05 Jul 2019 07:12:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:12:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.10_summits.bed INFO @ Fri, 05 Jul 2019 07:12:29: Done! pass1 - making usageList (111 chroms): 11 millis pass2 - checking and writing primary data (52833 records, 4 fields): 72 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:12:34: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.05_peaks.xls INFO @ Fri, 05 Jul 2019 07:12:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:12:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101882/ERX101882.05_summits.bed INFO @ Fri, 05 Jul 2019 07:12:37: Done! pass1 - making usageList (190 chroms): 27 millis pass2 - checking and writing primary data (134093 records, 4 fields): 172 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。