Job ID = 6457787 SRX = SRX475426 Genome = dm6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-06-21T12:11:34 prefetch.2.10.7: 1) Downloading 'SRR1175664'... 2020-06-21T12:11:34 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:12:42 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:12:42 prefetch.2.10.7: 'SRR1175664' is valid 2020-06-21T12:12:42 prefetch.2.10.7: 1) 'SRR1175664' was downloaded successfully Read 4000000 spots for SRR1175664/SRR1175664.sra Written 4000000 spots for SRR1175664/SRR1175664.sra 2020-06-21T12:13:05 prefetch.2.10.7: 1) Downloading 'SRR1175665'... 2020-06-21T12:13:05 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:13:46 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:13:46 prefetch.2.10.7: 'SRR1175665' is valid 2020-06-21T12:13:46 prefetch.2.10.7: 1) 'SRR1175665' was downloaded successfully Read 4000000 spots for SRR1175665/SRR1175665.sra Written 4000000 spots for SRR1175665/SRR1175665.sra 2020-06-21T12:14:09 prefetch.2.10.7: 1) Downloading 'SRR1175666'... 2020-06-21T12:14:09 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:14:36 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:14:36 prefetch.2.10.7: 'SRR1175666' is valid 2020-06-21T12:14:36 prefetch.2.10.7: 1) 'SRR1175666' was downloaded successfully Read 2835006 spots for SRR1175666/SRR1175666.sra Written 2835006 spots for SRR1175666/SRR1175666.sra 2020-06-21T12:14:56 prefetch.2.10.7: 1) Downloading 'SRR1175667'... 2020-06-21T12:14:56 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:15:39 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:15:39 prefetch.2.10.7: 'SRR1175667' is valid 2020-06-21T12:15:39 prefetch.2.10.7: 1) 'SRR1175667' was downloaded successfully Read 4000000 spots for SRR1175667/SRR1175667.sra Written 4000000 spots for SRR1175667/SRR1175667.sra 2020-06-21T12:16:02 prefetch.2.10.7: 1) Downloading 'SRR1175668'... 2020-06-21T12:16:02 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:16:35 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:16:36 prefetch.2.10.7: 'SRR1175668' is valid 2020-06-21T12:16:36 prefetch.2.10.7: 1) 'SRR1175668' was downloaded successfully Read 4000000 spots for SRR1175668/SRR1175668.sra Written 4000000 spots for SRR1175668/SRR1175668.sra 2020-06-21T12:16:58 prefetch.2.10.7: 1) Downloading 'SRR1175669'... 2020-06-21T12:16:58 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:17:36 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:17:36 prefetch.2.10.7: 'SRR1175669' is valid 2020-06-21T12:17:36 prefetch.2.10.7: 1) 'SRR1175669' was downloaded successfully Read 4000000 spots for SRR1175669/SRR1175669.sra Written 4000000 spots for SRR1175669/SRR1175669.sra 2020-06-21T12:17:59 prefetch.2.10.7: 1) Downloading 'SRR1175670'... 2020-06-21T12:17:59 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:18:40 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:18:40 prefetch.2.10.7: 'SRR1175670' is valid 2020-06-21T12:18:40 prefetch.2.10.7: 1) 'SRR1175670' was downloaded successfully Read 4000000 spots for SRR1175670/SRR1175670.sra Written 4000000 spots for SRR1175670/SRR1175670.sra 2020-06-21T12:19:03 prefetch.2.10.7: 1) Downloading 'SRR1175671'... 2020-06-21T12:19:03 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:20:09 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:20:09 prefetch.2.10.7: 'SRR1175671' is valid 2020-06-21T12:20:09 prefetch.2.10.7: 1) 'SRR1175671' was downloaded successfully Read 4000000 spots for SRR1175671/SRR1175671.sra Written 4000000 spots for SRR1175671/SRR1175671.sra 2020-06-21T12:20:31 prefetch.2.10.7: 1) Downloading 'SRR1175672'... 2020-06-21T12:20:31 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:21:26 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:21:26 prefetch.2.10.7: 'SRR1175672' is valid 2020-06-21T12:21:26 prefetch.2.10.7: 1) 'SRR1175672' was downloaded successfully Read 4000000 spots for SRR1175672/SRR1175672.sra Written 4000000 spots for SRR1175672/SRR1175672.sra 2020-06-21T12:21:49 prefetch.2.10.7: 1) Downloading 'SRR1175673'... 2020-06-21T12:21:49 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:22:39 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:22:40 prefetch.2.10.7: 'SRR1175673' is valid 2020-06-21T12:22:40 prefetch.2.10.7: 1) 'SRR1175673' was downloaded successfully Read 4000000 spots for SRR1175673/SRR1175673.sra Written 4000000 spots for SRR1175673/SRR1175673.sra 2020-06-21T12:23:03 prefetch.2.10.7: 1) Downloading 'SRR1175674'... 2020-06-21T12:23:03 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T12:23:38 prefetch.2.10.7: HTTPS download succeed 2020-06-21T12:23:39 prefetch.2.10.7: 'SRR1175674' is valid 2020-06-21T12:23:39 prefetch.2.10.7: 1) 'SRR1175674' was downloaded successfully Read 4000000 spots for SRR1175674/SRR1175674.sra Written 4000000 spots for SRR1175674/SRR1175674.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:10:39 42835006 reads; of these: 42835006 (100.00%) were unpaired; of these: 2345338 (5.48%) aligned 0 times 32386011 (75.61%) aligned exactly 1 time 8103657 (18.92%) aligned >1 times 94.52% overall alignment rate Time searching: 00:10:39 Overall time: 00:10:39 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 1870 sequences. [bam_sort_core] merging from 20 files... [bam_rmdupse_core] 19123507 / 40489668 = 0.4723 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 21:44:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 21:44:18: #1 read tag files... INFO @ Sun, 21 Jun 2020 21:44:18: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 21:44:24: 1000000 INFO @ Sun, 21 Jun 2020 21:44:29: 2000000 INFO @ Sun, 21 Jun 2020 21:44:35: 3000000 INFO @ Sun, 21 Jun 2020 21:44:40: 4000000 INFO @ Sun, 21 Jun 2020 21:44:46: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 21:44:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 21:44:48: #1 read tag files... INFO @ Sun, 21 Jun 2020 21:44:48: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 21:44:51: 6000000 INFO @ Sun, 21 Jun 2020 21:44:53: 1000000 INFO @ Sun, 21 Jun 2020 21:44:57: 7000000 INFO @ Sun, 21 Jun 2020 21:44:59: 2000000 INFO @ Sun, 21 Jun 2020 21:45:02: 8000000 INFO @ Sun, 21 Jun 2020 21:45:04: 3000000 INFO @ Sun, 21 Jun 2020 21:45:08: 9000000 INFO @ Sun, 21 Jun 2020 21:45:10: 4000000 INFO @ Sun, 21 Jun 2020 21:45:14: 10000000 INFO @ Sun, 21 Jun 2020 21:45:15: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 21:45:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 21:45:18: #1 read tag files... INFO @ Sun, 21 Jun 2020 21:45:18: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 21:45:19: 11000000 INFO @ Sun, 21 Jun 2020 21:45:21: 6000000 INFO @ Sun, 21 Jun 2020 21:45:24: 1000000 INFO @ Sun, 21 Jun 2020 21:45:25: 12000000 INFO @ Sun, 21 Jun 2020 21:45:26: 7000000 INFO @ Sun, 21 Jun 2020 21:45:29: 2000000 INFO @ Sun, 21 Jun 2020 21:45:30: 13000000 INFO @ Sun, 21 Jun 2020 21:45:32: 8000000 INFO @ Sun, 21 Jun 2020 21:45:35: 3000000 INFO @ Sun, 21 Jun 2020 21:45:36: 14000000 INFO @ Sun, 21 Jun 2020 21:45:38: 9000000 INFO @ Sun, 21 Jun 2020 21:45:40: 4000000 INFO @ Sun, 21 Jun 2020 21:45:42: 15000000 INFO @ Sun, 21 Jun 2020 21:45:43: 10000000 INFO @ Sun, 21 Jun 2020 21:45:46: 5000000 INFO @ Sun, 21 Jun 2020 21:45:47: 16000000 INFO @ Sun, 21 Jun 2020 21:45:49: 11000000 INFO @ Sun, 21 Jun 2020 21:45:52: 6000000 INFO @ Sun, 21 Jun 2020 21:45:53: 17000000 INFO @ Sun, 21 Jun 2020 21:45:54: 12000000 INFO @ Sun, 21 Jun 2020 21:45:57: 7000000 INFO @ Sun, 21 Jun 2020 21:45:58: 18000000 INFO @ Sun, 21 Jun 2020 21:46:00: 13000000 INFO @ Sun, 21 Jun 2020 21:46:03: 8000000 INFO @ Sun, 21 Jun 2020 21:46:04: 19000000 INFO @ Sun, 21 Jun 2020 21:46:06: 14000000 INFO @ Sun, 21 Jun 2020 21:46:09: 9000000 INFO @ Sun, 21 Jun 2020 21:46:10: 20000000 INFO @ Sun, 21 Jun 2020 21:46:11: 15000000 INFO @ Sun, 21 Jun 2020 21:46:14: 10000000 INFO @ Sun, 21 Jun 2020 21:46:15: 21000000 INFO @ Sun, 21 Jun 2020 21:46:17: 16000000 INFO @ Sun, 21 Jun 2020 21:46:18: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 21:46:18: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 21:46:18: #1 total tags in treatment: 21366161 INFO @ Sun, 21 Jun 2020 21:46:18: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 21:46:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 21:46:18: #1 tags after filtering in treatment: 21366062 INFO @ Sun, 21 Jun 2020 21:46:18: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 21:46:18: #1 finished! INFO @ Sun, 21 Jun 2020 21:46:18: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 21:46:18: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 21:46:20: #2 number of paired peaks: 892 WARNING @ Sun, 21 Jun 2020 21:46:20: Fewer paired peaks (892) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 892 pairs to build model! INFO @ Sun, 21 Jun 2020 21:46:20: start model_add_line... INFO @ Sun, 21 Jun 2020 21:46:20: 11000000 INFO @ Sun, 21 Jun 2020 21:46:20: start X-correlation... INFO @ Sun, 21 Jun 2020 21:46:20: end of X-cor INFO @ Sun, 21 Jun 2020 21:46:20: #2 finished! INFO @ Sun, 21 Jun 2020 21:46:20: #2 predicted fragment length is 123 bps INFO @ Sun, 21 Jun 2020 21:46:20: #2 alternative fragment length(s) may be 4,123 bps INFO @ Sun, 21 Jun 2020 21:46:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.05_model.r INFO @ Sun, 21 Jun 2020 21:46:20: #3 Call peaks... INFO @ Sun, 21 Jun 2020 21:46:20: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 21:46:22: 17000000 INFO @ Sun, 21 Jun 2020 21:46:25: 12000000 INFO @ Sun, 21 Jun 2020 21:46:28: 18000000 INFO @ Sun, 21 Jun 2020 21:46:31: 13000000 INFO @ Sun, 21 Jun 2020 21:46:34: 19000000 INFO @ Sun, 21 Jun 2020 21:46:36: 14000000 INFO @ Sun, 21 Jun 2020 21:46:39: 20000000 INFO @ Sun, 21 Jun 2020 21:46:42: 15000000 INFO @ Sun, 21 Jun 2020 21:46:45: 21000000 INFO @ Sun, 21 Jun 2020 21:46:47: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 21:46:47: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 21:46:47: #1 total tags in treatment: 21366161 INFO @ Sun, 21 Jun 2020 21:46:47: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 21:46:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 21:46:47: 16000000 INFO @ Sun, 21 Jun 2020 21:46:48: #1 tags after filtering in treatment: 21366062 INFO @ Sun, 21 Jun 2020 21:46:48: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 21:46:48: #1 finished! INFO @ Sun, 21 Jun 2020 21:46:48: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 21:46:48: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 21:46:49: #2 number of paired peaks: 892 WARNING @ Sun, 21 Jun 2020 21:46:49: Fewer paired peaks (892) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 892 pairs to build model! INFO @ Sun, 21 Jun 2020 21:46:49: start model_add_line... INFO @ Sun, 21 Jun 2020 21:46:49: start X-correlation... INFO @ Sun, 21 Jun 2020 21:46:49: end of X-cor INFO @ Sun, 21 Jun 2020 21:46:49: #2 finished! INFO @ Sun, 21 Jun 2020 21:46:49: #2 predicted fragment length is 123 bps INFO @ Sun, 21 Jun 2020 21:46:49: #2 alternative fragment length(s) may be 4,123 bps INFO @ Sun, 21 Jun 2020 21:46:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.10_model.r INFO @ Sun, 21 Jun 2020 21:46:49: #3 Call peaks... INFO @ Sun, 21 Jun 2020 21:46:49: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 21:46:53: 17000000 INFO @ Sun, 21 Jun 2020 21:46:59: 18000000 INFO @ Sun, 21 Jun 2020 21:47:04: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 21:47:04: 19000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sun, 21 Jun 2020 21:47:10: 20000000 INFO @ Sun, 21 Jun 2020 21:47:16: 21000000 INFO @ Sun, 21 Jun 2020 21:47:18: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 21:47:18: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 21:47:18: #1 total tags in treatment: 21366161 INFO @ Sun, 21 Jun 2020 21:47:18: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 21:47:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 21:47:19: #1 tags after filtering in treatment: 21366062 INFO @ Sun, 21 Jun 2020 21:47:19: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 21:47:19: #1 finished! INFO @ Sun, 21 Jun 2020 21:47:19: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 21:47:19: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 21:47:20: #2 number of paired peaks: 892 WARNING @ Sun, 21 Jun 2020 21:47:20: Fewer paired peaks (892) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 892 pairs to build model! INFO @ Sun, 21 Jun 2020 21:47:20: start model_add_line... INFO @ Sun, 21 Jun 2020 21:47:20: start X-correlation... INFO @ Sun, 21 Jun 2020 21:47:20: end of X-cor INFO @ Sun, 21 Jun 2020 21:47:20: #2 finished! INFO @ Sun, 21 Jun 2020 21:47:20: #2 predicted fragment length is 123 bps INFO @ Sun, 21 Jun 2020 21:47:20: #2 alternative fragment length(s) may be 4,123 bps INFO @ Sun, 21 Jun 2020 21:47:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.20_model.r INFO @ Sun, 21 Jun 2020 21:47:20: #3 Call peaks... INFO @ Sun, 21 Jun 2020 21:47:20: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 21:47:27: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.05_peaks.xls INFO @ Sun, 21 Jun 2020 21:47:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.05_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 21:47:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.05_summits.bed INFO @ Sun, 21 Jun 2020 21:47:28: Done! pass1 - making usageList (635 chroms): 2 millis pass2 - checking and writing primary data (10568 records, 4 fields): 27 millis CompletedMACS2peakCalling INFO @ Sun, 21 Jun 2020 21:47:37: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Sun, 21 Jun 2020 21:48:00: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.10_peaks.xls INFO @ Sun, 21 Jun 2020 21:48:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.10_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 21:48:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.10_summits.bed INFO @ Sun, 21 Jun 2020 21:48:00: Done! pass1 - making usageList (491 chroms): 2 millis pass2 - checking and writing primary data (4187 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Sun, 21 Jun 2020 21:48:09: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 21:48:33: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.20_peaks.xls INFO @ Sun, 21 Jun 2020 21:48:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.20_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 21:48:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX475426/SRX475426.20_summits.bed INFO @ Sun, 21 Jun 2020 21:48:33: Done! pass1 - making usageList (257 chroms): 1 millis pass2 - checking and writing primary data (1442 records, 4 fields): 11 millis CompletedMACS2peakCalling