Job ID = 6456797 SRX = SRX3981691 Genome = dm6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-06-21T11:04:16 prefetch.2.10.7: 1) Downloading 'SRR7050459'... 2020-06-21T11:04:16 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T11:05:17 prefetch.2.10.7: HTTPS download succeed 2020-06-21T11:05:18 prefetch.2.10.7: 'SRR7050459' is valid 2020-06-21T11:05:18 prefetch.2.10.7: 1) 'SRR7050459' was downloaded successfully 2020-06-21T11:05:18 prefetch.2.10.7: 'SRR7050459' has 0 unresolved dependencies Read 9654496 spots for SRR7050459/SRR7050459.sra Written 9654496 spots for SRR7050459/SRR7050459.sra 2020-06-21T11:05:58 prefetch.2.10.7: 1) Downloading 'SRR7050460'... 2020-06-21T11:05:58 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T11:06:56 prefetch.2.10.7: HTTPS download succeed 2020-06-21T11:06:56 prefetch.2.10.7: 'SRR7050460' is valid 2020-06-21T11:06:56 prefetch.2.10.7: 1) 'SRR7050460' was downloaded successfully 2020-06-21T11:06:56 prefetch.2.10.7: 'SRR7050460' has 0 unresolved dependencies Read 9643390 spots for SRR7050460/SRR7050460.sra Written 9643390 spots for SRR7050460/SRR7050460.sra 2020-06-21T11:07:35 prefetch.2.10.7: 1) Downloading 'SRR7050461'... 2020-06-21T11:07:35 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T11:08:41 prefetch.2.10.7: HTTPS download succeed 2020-06-21T11:08:42 prefetch.2.10.7: 'SRR7050461' is valid 2020-06-21T11:08:42 prefetch.2.10.7: 1) 'SRR7050461' was downloaded successfully 2020-06-21T11:08:42 prefetch.2.10.7: 'SRR7050461' has 0 unresolved dependencies Read 9679966 spots for SRR7050461/SRR7050461.sra Written 9679966 spots for SRR7050461/SRR7050461.sra 2020-06-21T11:09:21 prefetch.2.10.7: 1) Downloading 'SRR7050462'... 2020-06-21T11:09:21 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T11:10:44 prefetch.2.10.7: HTTPS download succeed 2020-06-21T11:10:45 prefetch.2.10.7: 'SRR7050462' is valid 2020-06-21T11:10:45 prefetch.2.10.7: 1) 'SRR7050462' was downloaded successfully 2020-06-21T11:10:45 prefetch.2.10.7: 'SRR7050462' has 0 unresolved dependencies Read 9721577 spots for SRR7050462/SRR7050462.sra Written 9721577 spots for SRR7050462/SRR7050462.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:11:14 38699429 reads; of these: 38699429 (100.00%) were unpaired; of these: 1313319 (3.39%) aligned 0 times 27242525 (70.40%) aligned exactly 1 time 10143585 (26.21%) aligned >1 times 96.61% overall alignment rate Time searching: 00:11:14 Overall time: 00:11:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 1870 sequences. [bam_sort_core] merging from 16 files... [bam_rmdupse_core] 5830339 / 37386110 = 0.1559 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 20:30:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 20:30:24: #1 read tag files... INFO @ Sun, 21 Jun 2020 20:30:24: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 20:30:31: 1000000 INFO @ Sun, 21 Jun 2020 20:30:39: 2000000 INFO @ Sun, 21 Jun 2020 20:30:46: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 20:30:54: 4000000 INFO @ Sun, 21 Jun 2020 20:30:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 20:30:54: #1 read tag files... INFO @ Sun, 21 Jun 2020 20:30:54: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 20:31:01: 1000000 INFO @ Sun, 21 Jun 2020 20:31:01: 5000000 INFO @ Sun, 21 Jun 2020 20:31:08: 2000000 INFO @ Sun, 21 Jun 2020 20:31:09: 6000000 INFO @ Sun, 21 Jun 2020 20:31:15: 3000000 INFO @ Sun, 21 Jun 2020 20:31:17: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 20:31:23: 4000000 INFO @ Sun, 21 Jun 2020 20:31:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 20:31:24: #1 read tag files... INFO @ Sun, 21 Jun 2020 20:31:24: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 20:31:24: 8000000 INFO @ Sun, 21 Jun 2020 20:31:30: 5000000 INFO @ Sun, 21 Jun 2020 20:31:31: 1000000 INFO @ Sun, 21 Jun 2020 20:31:32: 9000000 INFO @ Sun, 21 Jun 2020 20:31:37: 6000000 INFO @ Sun, 21 Jun 2020 20:31:39: 2000000 INFO @ Sun, 21 Jun 2020 20:31:40: 10000000 INFO @ Sun, 21 Jun 2020 20:31:44: 7000000 INFO @ Sun, 21 Jun 2020 20:31:46: 3000000 INFO @ Sun, 21 Jun 2020 20:31:47: 11000000 INFO @ Sun, 21 Jun 2020 20:31:52: 8000000 INFO @ Sun, 21 Jun 2020 20:31:53: 4000000 INFO @ Sun, 21 Jun 2020 20:31:54: 12000000 INFO @ Sun, 21 Jun 2020 20:31:59: 9000000 INFO @ Sun, 21 Jun 2020 20:32:01: 5000000 INFO @ Sun, 21 Jun 2020 20:32:02: 13000000 INFO @ Sun, 21 Jun 2020 20:32:06: 10000000 INFO @ Sun, 21 Jun 2020 20:32:08: 6000000 INFO @ Sun, 21 Jun 2020 20:32:09: 14000000 INFO @ Sun, 21 Jun 2020 20:32:13: 11000000 INFO @ Sun, 21 Jun 2020 20:32:16: 7000000 INFO @ Sun, 21 Jun 2020 20:32:17: 15000000 INFO @ Sun, 21 Jun 2020 20:32:21: 12000000 INFO @ Sun, 21 Jun 2020 20:32:23: 8000000 INFO @ Sun, 21 Jun 2020 20:32:24: 16000000 INFO @ Sun, 21 Jun 2020 20:32:28: 13000000 INFO @ Sun, 21 Jun 2020 20:32:30: 9000000 INFO @ Sun, 21 Jun 2020 20:32:31: 17000000 INFO @ Sun, 21 Jun 2020 20:32:35: 14000000 INFO @ Sun, 21 Jun 2020 20:32:38: 10000000 INFO @ Sun, 21 Jun 2020 20:32:39: 18000000 INFO @ Sun, 21 Jun 2020 20:32:43: 15000000 INFO @ Sun, 21 Jun 2020 20:32:45: 11000000 INFO @ Sun, 21 Jun 2020 20:32:46: 19000000 INFO @ Sun, 21 Jun 2020 20:32:50: 16000000 INFO @ Sun, 21 Jun 2020 20:32:52: 12000000 INFO @ Sun, 21 Jun 2020 20:32:54: 20000000 INFO @ Sun, 21 Jun 2020 20:32:57: 17000000 INFO @ Sun, 21 Jun 2020 20:33:00: 13000000 INFO @ Sun, 21 Jun 2020 20:33:02: 21000000 INFO @ Sun, 21 Jun 2020 20:33:05: 18000000 INFO @ Sun, 21 Jun 2020 20:33:07: 14000000 INFO @ Sun, 21 Jun 2020 20:33:09: 22000000 INFO @ Sun, 21 Jun 2020 20:33:12: 19000000 INFO @ Sun, 21 Jun 2020 20:33:14: 15000000 INFO @ Sun, 21 Jun 2020 20:33:17: 23000000 INFO @ Sun, 21 Jun 2020 20:33:20: 20000000 INFO @ Sun, 21 Jun 2020 20:33:22: 16000000 INFO @ Sun, 21 Jun 2020 20:33:24: 24000000 INFO @ Sun, 21 Jun 2020 20:33:27: 21000000 INFO @ Sun, 21 Jun 2020 20:33:29: 17000000 INFO @ Sun, 21 Jun 2020 20:33:32: 25000000 INFO @ Sun, 21 Jun 2020 20:33:35: 22000000 INFO @ Sun, 21 Jun 2020 20:33:36: 18000000 INFO @ Sun, 21 Jun 2020 20:33:39: 26000000 INFO @ Sun, 21 Jun 2020 20:33:42: 23000000 INFO @ Sun, 21 Jun 2020 20:33:44: 19000000 INFO @ Sun, 21 Jun 2020 20:33:47: 27000000 INFO @ Sun, 21 Jun 2020 20:33:49: 24000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sun, 21 Jun 2020 20:33:51: 20000000 INFO @ Sun, 21 Jun 2020 20:33:55: 28000000 INFO @ Sun, 21 Jun 2020 20:33:57: 25000000 INFO @ Sun, 21 Jun 2020 20:33:58: 21000000 INFO @ Sun, 21 Jun 2020 20:34:02: 29000000 INFO @ Sun, 21 Jun 2020 20:34:04: 26000000 INFO @ Sun, 21 Jun 2020 20:34:05: 22000000 INFO @ Sun, 21 Jun 2020 20:34:10: 30000000 INFO @ Sun, 21 Jun 2020 20:34:12: 27000000 INFO @ Sun, 21 Jun 2020 20:34:13: 23000000 INFO @ Sun, 21 Jun 2020 20:34:17: 31000000 INFO @ Sun, 21 Jun 2020 20:34:19: 28000000 INFO @ Sun, 21 Jun 2020 20:34:20: 24000000 INFO @ Sun, 21 Jun 2020 20:34:21: #1 tag size is determined as 51 bps INFO @ Sun, 21 Jun 2020 20:34:21: #1 tag size = 51 INFO @ Sun, 21 Jun 2020 20:34:21: #1 total tags in treatment: 31555771 INFO @ Sun, 21 Jun 2020 20:34:21: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 20:34:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 20:34:22: #1 tags after filtering in treatment: 31555725 INFO @ Sun, 21 Jun 2020 20:34:22: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 20:34:22: #1 finished! INFO @ Sun, 21 Jun 2020 20:34:22: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 20:34:22: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 20:34:24: #2 number of paired peaks: 218 WARNING @ Sun, 21 Jun 2020 20:34:24: Fewer paired peaks (218) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 218 pairs to build model! INFO @ Sun, 21 Jun 2020 20:34:24: start model_add_line... INFO @ Sun, 21 Jun 2020 20:34:25: start X-correlation... INFO @ Sun, 21 Jun 2020 20:34:25: end of X-cor INFO @ Sun, 21 Jun 2020 20:34:25: #2 finished! INFO @ Sun, 21 Jun 2020 20:34:25: #2 predicted fragment length is 1 bps INFO @ Sun, 21 Jun 2020 20:34:25: #2 alternative fragment length(s) may be 1,50,579 bps INFO @ Sun, 21 Jun 2020 20:34:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.05_model.r WARNING @ Sun, 21 Jun 2020 20:34:25: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 20:34:25: #2 You may need to consider one of the other alternative d(s): 1,50,579 WARNING @ Sun, 21 Jun 2020 20:34:25: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 20:34:25: #3 Call peaks... INFO @ Sun, 21 Jun 2020 20:34:25: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 20:34:26: 29000000 INFO @ Sun, 21 Jun 2020 20:34:27: 25000000 INFO @ Sun, 21 Jun 2020 20:34:33: 30000000 INFO @ Sun, 21 Jun 2020 20:34:33: 26000000 INFO @ Sun, 21 Jun 2020 20:34:39: 31000000 INFO @ Sun, 21 Jun 2020 20:34:40: 27000000 INFO @ Sun, 21 Jun 2020 20:34:43: #1 tag size is determined as 51 bps INFO @ Sun, 21 Jun 2020 20:34:43: #1 tag size = 51 INFO @ Sun, 21 Jun 2020 20:34:43: #1 total tags in treatment: 31555771 INFO @ Sun, 21 Jun 2020 20:34:43: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 20:34:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 20:34:44: #1 tags after filtering in treatment: 31555725 INFO @ Sun, 21 Jun 2020 20:34:44: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 20:34:44: #1 finished! INFO @ Sun, 21 Jun 2020 20:34:44: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 20:34:44: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 20:34:46: #2 number of paired peaks: 218 WARNING @ Sun, 21 Jun 2020 20:34:46: Fewer paired peaks (218) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 218 pairs to build model! INFO @ Sun, 21 Jun 2020 20:34:46: start model_add_line... INFO @ Sun, 21 Jun 2020 20:34:46: start X-correlation... INFO @ Sun, 21 Jun 2020 20:34:46: end of X-cor INFO @ Sun, 21 Jun 2020 20:34:46: #2 finished! INFO @ Sun, 21 Jun 2020 20:34:46: #2 predicted fragment length is 1 bps INFO @ Sun, 21 Jun 2020 20:34:46: #2 alternative fragment length(s) may be 1,50,579 bps INFO @ Sun, 21 Jun 2020 20:34:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.10_model.r WARNING @ Sun, 21 Jun 2020 20:34:46: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 20:34:46: #2 You may need to consider one of the other alternative d(s): 1,50,579 WARNING @ Sun, 21 Jun 2020 20:34:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 20:34:46: #3 Call peaks... INFO @ Sun, 21 Jun 2020 20:34:46: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 20:34:46: 28000000 INFO @ Sun, 21 Jun 2020 20:34:52: 29000000 INFO @ Sun, 21 Jun 2020 20:34:57: 30000000 INFO @ Sun, 21 Jun 2020 20:35:03: 31000000 BigWig に変換しました。 INFO @ Sun, 21 Jun 2020 20:35:06: #1 tag size is determined as 51 bps INFO @ Sun, 21 Jun 2020 20:35:06: #1 tag size = 51 INFO @ Sun, 21 Jun 2020 20:35:06: #1 total tags in treatment: 31555771 INFO @ Sun, 21 Jun 2020 20:35:06: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 20:35:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 20:35:07: #1 tags after filtering in treatment: 31555725 INFO @ Sun, 21 Jun 2020 20:35:07: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 20:35:07: #1 finished! INFO @ Sun, 21 Jun 2020 20:35:07: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 20:35:07: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 20:35:09: #2 number of paired peaks: 218 WARNING @ Sun, 21 Jun 2020 20:35:09: Fewer paired peaks (218) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 218 pairs to build model! INFO @ Sun, 21 Jun 2020 20:35:09: start model_add_line... INFO @ Sun, 21 Jun 2020 20:35:09: start X-correlation... INFO @ Sun, 21 Jun 2020 20:35:09: end of X-cor INFO @ Sun, 21 Jun 2020 20:35:09: #2 finished! INFO @ Sun, 21 Jun 2020 20:35:09: #2 predicted fragment length is 1 bps INFO @ Sun, 21 Jun 2020 20:35:09: #2 alternative fragment length(s) may be 1,50,579 bps INFO @ Sun, 21 Jun 2020 20:35:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.20_model.r WARNING @ Sun, 21 Jun 2020 20:35:09: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 20:35:09: #2 You may need to consider one of the other alternative d(s): 1,50,579 WARNING @ Sun, 21 Jun 2020 20:35:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 20:35:09: #3 Call peaks... INFO @ Sun, 21 Jun 2020 20:35:09: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 20:35:17: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 20:35:35: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 20:35:41: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.05_peaks.xls INFO @ Sun, 21 Jun 2020 20:35:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.05_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 20:35:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.05_summits.bed INFO @ Sun, 21 Jun 2020 20:35:41: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Sun, 21 Jun 2020 20:35:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.10_peaks.xls INFO @ Sun, 21 Jun 2020 20:35:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.10_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 20:35:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.10_summits.bed INFO @ Sun, 21 Jun 2020 20:35:59: Done! INFO @ Sun, 21 Jun 2020 20:35:59: #3 Call peaks for each chromosome... pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Sun, 21 Jun 2020 20:36:23: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.20_peaks.xls INFO @ Sun, 21 Jun 2020 20:36:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.20_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 20:36:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX3981691/SRX3981691.20_summits.bed INFO @ Sun, 21 Jun 2020 20:36:23: Done! pass1 - making usageList (0 chroms): 3 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling