Job ID = 12265045 SRX = SRX3088369 Genome = dm6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:00 9188 reads; of these: 9188 (100.00%) were unpaired; of these: 4528 (49.28%) aligned 0 times 3992 (43.45%) aligned exactly 1 time 668 (7.27%) aligned >1 times 50.72% overall alignment rate Time searching: 00:00:00 Overall time: 00:00:00 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 1870 sequences. [bam_rmdupse_core] 1298 / 4660 = 0.2785 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:05:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:05:30: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:05:30: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:05:30: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 06:05:30: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 06:05:30: #1 total tags in treatment: 3362 INFO @ Sat, 03 Apr 2021 06:05:30: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 06:05:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 06:05:30: #1 tags after filtering in treatment: 3296 INFO @ Sat, 03 Apr 2021 06:05:30: #1 Redundant rate of treatment: 0.02 INFO @ Sat, 03 Apr 2021 06:05:30: #1 finished! INFO @ Sat, 03 Apr 2021 06:05:30: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 06:05:30: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 06:05:30: #2 number of paired peaks: 0 WARNING @ Sat, 03 Apr 2021 06:05:30: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 03 Apr 2021 06:05:30: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 3 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:06:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:06:00: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:06:00: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:06:00: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 06:06:00: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 06:06:00: #1 total tags in treatment: 3362 INFO @ Sat, 03 Apr 2021 06:06:00: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 06:06:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 06:06:00: #1 tags after filtering in treatment: 3296 INFO @ Sat, 03 Apr 2021 06:06:00: #1 Redundant rate of treatment: 0.02 INFO @ Sat, 03 Apr 2021 06:06:00: #1 finished! INFO @ Sat, 03 Apr 2021 06:06:00: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 06:06:00: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 06:06:00: #2 number of paired peaks: 0 WARNING @ Sat, 03 Apr 2021 06:06:00: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 03 Apr 2021 06:06:00: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 06:06:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:06:30: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:06:30: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:06:30: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 06:06:30: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 06:06:30: #1 total tags in treatment: 3362 INFO @ Sat, 03 Apr 2021 06:06:30: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 06:06:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 06:06:30: #1 tags after filtering in treatment: 3296 INFO @ Sat, 03 Apr 2021 06:06:30: #1 Redundant rate of treatment: 0.02 INFO @ Sat, 03 Apr 2021 06:06:30: #1 finished! INFO @ Sat, 03 Apr 2021 06:06:30: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 06:06:30: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 06:06:30: #2 number of paired peaks: 0 WARNING @ Sat, 03 Apr 2021 06:06:30: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 03 Apr 2021 06:06:30: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 3 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm6/SRX3088369/SRX3088369.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling