Job ID = 6455858 SRX = SRX3011268 Genome = dm6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-06-21T10:16:51 prefetch.2.10.7: 1) Downloading 'SRR5834744'... 2020-06-21T10:16:51 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:20:58 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:20:58 prefetch.2.10.7: 1) 'SRR5834744' was downloaded successfully 2020-06-21T10:21:50 prefetch.2.10.7: 'SRR5834744' has 10 unresolved dependencies 2020-06-21T10:21:50 prefetch.2.10.7: 2) Downloading 'ncbi-acc:NC_004353.3?vdb-ctx=refseq'... 2020-06-21T10:21:50 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:22:02 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:22:02 prefetch.2.10.7: 2) 'ncbi-acc:NC_004353.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T10:22:02 prefetch.2.10.7: 3) Downloading 'ncbi-acc:NC_004354.3?vdb-ctx=refseq'... 2020-06-21T10:22:02 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:22:18 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:22:18 prefetch.2.10.7: 3) 'ncbi-acc:NC_004354.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T10:22:18 prefetch.2.10.7: 4) Downloading 'ncbi-acc:NS_000188.1?vdb-ctx=refseq'... 2020-06-21T10:22:18 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:22:34 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:22:34 prefetch.2.10.7: 4) 'ncbi-acc:NS_000188.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T10:22:34 prefetch.2.10.7: 5) Downloading 'ncbi-acc:NT_033777.2?vdb-ctx=refseq'... 2020-06-21T10:22:34 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:22:51 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:22:51 prefetch.2.10.7: 5) 'ncbi-acc:NT_033777.2?vdb-ctx=refseq' was downloaded successfully 2020-06-21T10:22:51 prefetch.2.10.7: 6) Downloading 'ncbi-acc:NT_033778.3?vdb-ctx=refseq'... 2020-06-21T10:22:51 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:23:10 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:23:10 prefetch.2.10.7: 6) 'ncbi-acc:NT_033778.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T10:23:10 prefetch.2.10.7: 7) Downloading 'ncbi-acc:NT_033779.4?vdb-ctx=refseq'... 2020-06-21T10:23:10 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:23:27 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:23:27 prefetch.2.10.7: 7) 'ncbi-acc:NT_033779.4?vdb-ctx=refseq' was downloaded successfully 2020-06-21T10:23:27 prefetch.2.10.7: 8) Downloading 'ncbi-acc:NT_037436.3?vdb-ctx=refseq'... 2020-06-21T10:23:27 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:23:44 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:23:44 prefetch.2.10.7: 8) 'ncbi-acc:NT_037436.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T10:23:44 prefetch.2.10.7: 9) Downloading 'ncbi-acc:NW_001848856.1?vdb-ctx=refseq'... 2020-06-21T10:23:44 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:23:56 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:23:56 prefetch.2.10.7: 9) 'ncbi-acc:NW_001848856.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T10:23:56 prefetch.2.10.7: 10) Downloading 'ncbi-acc:NW_001848857.1?vdb-ctx=refseq'... 2020-06-21T10:23:56 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:24:10 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:24:10 prefetch.2.10.7: 10) 'ncbi-acc:NW_001848857.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T10:24:10 prefetch.2.10.7: 11) Downloading 'ncbi-acc:NW_001848858.1?vdb-ctx=refseq'... 2020-06-21T10:24:10 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T10:24:23 prefetch.2.10.7: HTTPS download succeed 2020-06-21T10:24:23 prefetch.2.10.7: 11) 'ncbi-acc:NW_001848858.1?vdb-ctx=refseq' was downloaded successfully Read 52364441 spots for SRR5834744/SRR5834744.sra Written 52364441 spots for SRR5834744/SRR5834744.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:10:38 52364441 reads; of these: 52364441 (100.00%) were unpaired; of these: 2385857 (4.56%) aligned 0 times 36045065 (68.84%) aligned exactly 1 time 13933519 (26.61%) aligned >1 times 95.44% overall alignment rate Time searching: 00:10:38 Overall time: 00:10:38 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 1870 sequences. [bam_sort_core] merging from 16 files... [bam_rmdupse_core] 11833528 / 49978584 = 0.2368 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 19:47:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 19:47:10: #1 read tag files... INFO @ Sun, 21 Jun 2020 19:47:10: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 19:47:16: 1000000 INFO @ Sun, 21 Jun 2020 19:47:22: 2000000 INFO @ Sun, 21 Jun 2020 19:47:27: 3000000 INFO @ Sun, 21 Jun 2020 19:47:33: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 19:47:39: 5000000 INFO @ Sun, 21 Jun 2020 19:47:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 19:47:40: #1 read tag files... INFO @ Sun, 21 Jun 2020 19:47:40: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 19:47:44: 6000000 INFO @ Sun, 21 Jun 2020 19:47:46: 1000000 INFO @ Sun, 21 Jun 2020 19:47:50: 7000000 INFO @ Sun, 21 Jun 2020 19:47:51: 2000000 INFO @ Sun, 21 Jun 2020 19:47:56: 8000000 INFO @ Sun, 21 Jun 2020 19:47:56: 3000000 INFO @ Sun, 21 Jun 2020 19:48:01: 4000000 INFO @ Sun, 21 Jun 2020 19:48:02: 9000000 INFO @ Sun, 21 Jun 2020 19:48:06: 5000000 INFO @ Sun, 21 Jun 2020 19:48:08: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 19:48:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 19:48:11: #1 read tag files... INFO @ Sun, 21 Jun 2020 19:48:11: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 19:48:11: 6000000 INFO @ Sun, 21 Jun 2020 19:48:13: 11000000 INFO @ Sun, 21 Jun 2020 19:48:17: 1000000 INFO @ Sun, 21 Jun 2020 19:48:17: 7000000 INFO @ Sun, 21 Jun 2020 19:48:19: 12000000 INFO @ Sun, 21 Jun 2020 19:48:22: 8000000 INFO @ Sun, 21 Jun 2020 19:48:22: 2000000 INFO @ Sun, 21 Jun 2020 19:48:25: 13000000 INFO @ Sun, 21 Jun 2020 19:48:27: 9000000 INFO @ Sun, 21 Jun 2020 19:48:28: 3000000 INFO @ Sun, 21 Jun 2020 19:48:31: 14000000 INFO @ Sun, 21 Jun 2020 19:48:33: 10000000 INFO @ Sun, 21 Jun 2020 19:48:34: 4000000 INFO @ Sun, 21 Jun 2020 19:48:37: 15000000 INFO @ Sun, 21 Jun 2020 19:48:38: 11000000 INFO @ Sun, 21 Jun 2020 19:48:40: 5000000 INFO @ Sun, 21 Jun 2020 19:48:43: 12000000 INFO @ Sun, 21 Jun 2020 19:48:44: 16000000 INFO @ Sun, 21 Jun 2020 19:48:45: 6000000 INFO @ Sun, 21 Jun 2020 19:48:48: 13000000 INFO @ Sun, 21 Jun 2020 19:48:50: 17000000 INFO @ Sun, 21 Jun 2020 19:48:51: 7000000 INFO @ Sun, 21 Jun 2020 19:48:54: 14000000 INFO @ Sun, 21 Jun 2020 19:48:56: 18000000 INFO @ Sun, 21 Jun 2020 19:48:57: 8000000 INFO @ Sun, 21 Jun 2020 19:48:59: 15000000 INFO @ Sun, 21 Jun 2020 19:49:02: 19000000 INFO @ Sun, 21 Jun 2020 19:49:03: 9000000 INFO @ Sun, 21 Jun 2020 19:49:05: 16000000 INFO @ Sun, 21 Jun 2020 19:49:08: 20000000 INFO @ Sun, 21 Jun 2020 19:49:09: 10000000 INFO @ Sun, 21 Jun 2020 19:49:10: 17000000 INFO @ Sun, 21 Jun 2020 19:49:13: 21000000 INFO @ Sun, 21 Jun 2020 19:49:15: 11000000 INFO @ Sun, 21 Jun 2020 19:49:15: 18000000 INFO @ Sun, 21 Jun 2020 19:49:19: 22000000 INFO @ Sun, 21 Jun 2020 19:49:21: 19000000 INFO @ Sun, 21 Jun 2020 19:49:21: 12000000 INFO @ Sun, 21 Jun 2020 19:49:25: 23000000 INFO @ Sun, 21 Jun 2020 19:49:26: 20000000 INFO @ Sun, 21 Jun 2020 19:49:27: 13000000 INFO @ Sun, 21 Jun 2020 19:49:31: 21000000 INFO @ Sun, 21 Jun 2020 19:49:31: 24000000 INFO @ Sun, 21 Jun 2020 19:49:32: 14000000 INFO @ Sun, 21 Jun 2020 19:49:36: 22000000 INFO @ Sun, 21 Jun 2020 19:49:37: 25000000 INFO @ Sun, 21 Jun 2020 19:49:38: 15000000 INFO @ Sun, 21 Jun 2020 19:49:42: 23000000 INFO @ Sun, 21 Jun 2020 19:49:43: 26000000 INFO @ Sun, 21 Jun 2020 19:49:44: 16000000 INFO @ Sun, 21 Jun 2020 19:49:47: 24000000 INFO @ Sun, 21 Jun 2020 19:49:48: 27000000 INFO @ Sun, 21 Jun 2020 19:49:50: 17000000 INFO @ Sun, 21 Jun 2020 19:49:52: 25000000 INFO @ Sun, 21 Jun 2020 19:49:54: 28000000 INFO @ Sun, 21 Jun 2020 19:49:55: 18000000 INFO @ Sun, 21 Jun 2020 19:49:57: 26000000 INFO @ Sun, 21 Jun 2020 19:50:00: 29000000 INFO @ Sun, 21 Jun 2020 19:50:01: 19000000 INFO @ Sun, 21 Jun 2020 19:50:02: 27000000 INFO @ Sun, 21 Jun 2020 19:50:06: 30000000 INFO @ Sun, 21 Jun 2020 19:50:07: 20000000 INFO @ Sun, 21 Jun 2020 19:50:07: 28000000 INFO @ Sun, 21 Jun 2020 19:50:12: 29000000 INFO @ Sun, 21 Jun 2020 19:50:12: 31000000 INFO @ Sun, 21 Jun 2020 19:50:12: 21000000 INFO @ Sun, 21 Jun 2020 19:50:17: 30000000 INFO @ Sun, 21 Jun 2020 19:50:18: 32000000 INFO @ Sun, 21 Jun 2020 19:50:18: 22000000 INFO @ Sun, 21 Jun 2020 19:50:22: 31000000 INFO @ Sun, 21 Jun 2020 19:50:24: 23000000 INFO @ Sun, 21 Jun 2020 19:50:24: 33000000 INFO @ Sun, 21 Jun 2020 19:50:27: 32000000 INFO @ Sun, 21 Jun 2020 19:50:30: 24000000 INFO @ Sun, 21 Jun 2020 19:50:30: 34000000 INFO @ Sun, 21 Jun 2020 19:50:33: 33000000 INFO @ Sun, 21 Jun 2020 19:50:35: 25000000 INFO @ Sun, 21 Jun 2020 19:50:36: 35000000 INFO @ Sun, 21 Jun 2020 19:50:38: 34000000 INFO @ Sun, 21 Jun 2020 19:50:41: 26000000 INFO @ Sun, 21 Jun 2020 19:50:42: 36000000 INFO @ Sun, 21 Jun 2020 19:50:43: 35000000 INFO @ Sun, 21 Jun 2020 19:50:46: 27000000 INFO @ Sun, 21 Jun 2020 19:50:47: 37000000 INFO @ Sun, 21 Jun 2020 19:50:48: 36000000 INFO @ Sun, 21 Jun 2020 19:50:52: 28000000 INFO @ Sun, 21 Jun 2020 19:50:53: 38000000 INFO @ Sun, 21 Jun 2020 19:50:54: 37000000 INFO @ Sun, 21 Jun 2020 19:50:55: #1 tag size is determined as 40 bps INFO @ Sun, 21 Jun 2020 19:50:55: #1 tag size = 40 INFO @ Sun, 21 Jun 2020 19:50:55: #1 total tags in treatment: 38145056 INFO @ Sun, 21 Jun 2020 19:50:55: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 19:50:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 19:50:56: #1 tags after filtering in treatment: 38145032 INFO @ Sun, 21 Jun 2020 19:50:56: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 19:50:56: #1 finished! INFO @ Sun, 21 Jun 2020 19:50:56: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 19:50:56: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 19:50:57: 29000000 INFO @ Sun, 21 Jun 2020 19:50:58: #2 number of paired peaks: 169 WARNING @ Sun, 21 Jun 2020 19:50:58: Fewer paired peaks (169) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 169 pairs to build model! INFO @ Sun, 21 Jun 2020 19:50:58: start model_add_line... INFO @ Sun, 21 Jun 2020 19:50:59: start X-correlation... INFO @ Sun, 21 Jun 2020 19:50:59: end of X-cor INFO @ Sun, 21 Jun 2020 19:50:59: #2 finished! INFO @ Sun, 21 Jun 2020 19:50:59: #2 predicted fragment length is 1 bps INFO @ Sun, 21 Jun 2020 19:50:59: #2 alternative fragment length(s) may be 1,31,330,447,505,522,561,580 bps INFO @ Sun, 21 Jun 2020 19:50:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.05_model.r WARNING @ Sun, 21 Jun 2020 19:50:59: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 19:50:59: #2 You may need to consider one of the other alternative d(s): 1,31,330,447,505,522,561,580 WARNING @ Sun, 21 Jun 2020 19:50:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 19:50:59: #3 Call peaks... INFO @ Sun, 21 Jun 2020 19:50:59: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 19:50:59: 38000000 INFO @ Sun, 21 Jun 2020 19:51:00: #1 tag size is determined as 40 bps INFO @ Sun, 21 Jun 2020 19:51:00: #1 tag size = 40 INFO @ Sun, 21 Jun 2020 19:51:00: #1 total tags in treatment: 38145056 INFO @ Sun, 21 Jun 2020 19:51:00: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 19:51:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 19:51:01: #1 tags after filtering in treatment: 38145032 INFO @ Sun, 21 Jun 2020 19:51:01: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 19:51:01: #1 finished! INFO @ Sun, 21 Jun 2020 19:51:01: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 19:51:01: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 19:51:03: 30000000 INFO @ Sun, 21 Jun 2020 19:51:03: #2 number of paired peaks: 169 WARNING @ Sun, 21 Jun 2020 19:51:03: Fewer paired peaks (169) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 169 pairs to build model! INFO @ Sun, 21 Jun 2020 19:51:03: start model_add_line... INFO @ Sun, 21 Jun 2020 19:51:04: start X-correlation... INFO @ Sun, 21 Jun 2020 19:51:04: end of X-cor INFO @ Sun, 21 Jun 2020 19:51:04: #2 finished! INFO @ Sun, 21 Jun 2020 19:51:04: #2 predicted fragment length is 1 bps INFO @ Sun, 21 Jun 2020 19:51:04: #2 alternative fragment length(s) may be 1,31,330,447,505,522,561,580 bps INFO @ Sun, 21 Jun 2020 19:51:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.10_model.r WARNING @ Sun, 21 Jun 2020 19:51:04: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 19:51:04: #2 You may need to consider one of the other alternative d(s): 1,31,330,447,505,522,561,580 WARNING @ Sun, 21 Jun 2020 19:51:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 19:51:04: #3 Call peaks... INFO @ Sun, 21 Jun 2020 19:51:04: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 19:51:08: 31000000 INFO @ Sun, 21 Jun 2020 19:51:14: 32000000 INFO @ Sun, 21 Jun 2020 19:51:19: 33000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sun, 21 Jun 2020 19:51:25: 34000000 INFO @ Sun, 21 Jun 2020 19:51:30: 35000000 INFO @ Sun, 21 Jun 2020 19:51:36: 36000000 INFO @ Sun, 21 Jun 2020 19:51:41: 37000000 INFO @ Sun, 21 Jun 2020 19:51:47: 38000000 INFO @ Sun, 21 Jun 2020 19:51:48: #1 tag size is determined as 40 bps INFO @ Sun, 21 Jun 2020 19:51:48: #1 tag size = 40 INFO @ Sun, 21 Jun 2020 19:51:48: #1 total tags in treatment: 38145056 INFO @ Sun, 21 Jun 2020 19:51:48: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 19:51:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 19:51:49: #1 tags after filtering in treatment: 38145032 INFO @ Sun, 21 Jun 2020 19:51:49: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 19:51:49: #1 finished! INFO @ Sun, 21 Jun 2020 19:51:49: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 19:51:49: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 19:51:51: #2 number of paired peaks: 169 WARNING @ Sun, 21 Jun 2020 19:51:51: Fewer paired peaks (169) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 169 pairs to build model! INFO @ Sun, 21 Jun 2020 19:51:51: start model_add_line... INFO @ Sun, 21 Jun 2020 19:51:51: start X-correlation... INFO @ Sun, 21 Jun 2020 19:51:51: end of X-cor INFO @ Sun, 21 Jun 2020 19:51:51: #2 finished! INFO @ Sun, 21 Jun 2020 19:51:51: #2 predicted fragment length is 1 bps INFO @ Sun, 21 Jun 2020 19:51:51: #2 alternative fragment length(s) may be 1,31,330,447,505,522,561,580 bps INFO @ Sun, 21 Jun 2020 19:51:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.20_model.r WARNING @ Sun, 21 Jun 2020 19:51:51: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 19:51:51: #2 You may need to consider one of the other alternative d(s): 1,31,330,447,505,522,561,580 WARNING @ Sun, 21 Jun 2020 19:51:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 19:51:51: #3 Call peaks... INFO @ Sun, 21 Jun 2020 19:51:51: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 19:51:56: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 19:51:57: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 19:52:21: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.05_peaks.xls INFO @ Sun, 21 Jun 2020 19:52:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.05_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 19:52:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.05_summits.bed INFO @ Sun, 21 Jun 2020 19:52:21: Done! pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Sun, 21 Jun 2020 19:52:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.10_peaks.xls INFO @ Sun, 21 Jun 2020 19:52:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.10_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 19:52:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.10_summits.bed INFO @ Sun, 21 Jun 2020 19:52:22: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling BigWig に変換しました。 INFO @ Sun, 21 Jun 2020 19:52:46: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 19:53:11: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.20_peaks.xls INFO @ Sun, 21 Jun 2020 19:53:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.20_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 19:53:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX3011268/SRX3011268.20_summits.bed INFO @ Sun, 21 Jun 2020 19:53:11: Done! pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling