Job ID = 6454447 SRX = SRX2068664 Genome = dm6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-06-21T09:07:09 prefetch.2.10.7: 1) Downloading 'SRR4101020'... 2020-06-21T09:07:09 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:18:26 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:18:26 prefetch.2.10.7: 1) 'SRR4101020' was downloaded successfully 2020-06-21T09:19:17 prefetch.2.10.7: 'SRR4101020' has 10 unresolved dependencies 2020-06-21T09:19:17 prefetch.2.10.7: 2) Downloading 'ncbi-acc:NC_004353.3?vdb-ctx=refseq'... 2020-06-21T09:19:17 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:19:29 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:19:29 prefetch.2.10.7: 2) 'ncbi-acc:NC_004353.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T09:19:29 prefetch.2.10.7: 3) Downloading 'ncbi-acc:NC_004354.3?vdb-ctx=refseq'... 2020-06-21T09:19:29 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:19:46 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:19:46 prefetch.2.10.7: 3) 'ncbi-acc:NC_004354.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T09:19:46 prefetch.2.10.7: 4) Downloading 'ncbi-acc:NS_000188.1?vdb-ctx=refseq'... 2020-06-21T09:19:46 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:20:01 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:20:01 prefetch.2.10.7: 4) 'ncbi-acc:NS_000188.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T09:20:01 prefetch.2.10.7: 5) Downloading 'ncbi-acc:NT_033777.2?vdb-ctx=refseq'... 2020-06-21T09:20:01 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:20:21 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:20:21 prefetch.2.10.7: 5) 'ncbi-acc:NT_033777.2?vdb-ctx=refseq' was downloaded successfully 2020-06-21T09:20:21 prefetch.2.10.7: 6) Downloading 'ncbi-acc:NT_033778.3?vdb-ctx=refseq'... 2020-06-21T09:20:21 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:20:42 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:20:42 prefetch.2.10.7: 6) 'ncbi-acc:NT_033778.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T09:20:42 prefetch.2.10.7: 7) Downloading 'ncbi-acc:NT_033779.4?vdb-ctx=refseq'... 2020-06-21T09:20:42 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:20:58 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:20:58 prefetch.2.10.7: 7) 'ncbi-acc:NT_033779.4?vdb-ctx=refseq' was downloaded successfully 2020-06-21T09:20:58 prefetch.2.10.7: 8) Downloading 'ncbi-acc:NT_037436.3?vdb-ctx=refseq'... 2020-06-21T09:20:58 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:21:14 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:21:14 prefetch.2.10.7: 8) 'ncbi-acc:NT_037436.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T09:21:14 prefetch.2.10.7: 9) Downloading 'ncbi-acc:NW_001848856.1?vdb-ctx=refseq'... 2020-06-21T09:21:14 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:21:28 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:21:28 prefetch.2.10.7: 9) 'ncbi-acc:NW_001848856.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T09:21:28 prefetch.2.10.7: 10) Downloading 'ncbi-acc:NW_001848857.1?vdb-ctx=refseq'... 2020-06-21T09:21:28 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:21:41 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:21:41 prefetch.2.10.7: 10) 'ncbi-acc:NW_001848857.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T09:21:41 prefetch.2.10.7: 11) Downloading 'ncbi-acc:NW_001848858.1?vdb-ctx=refseq'... 2020-06-21T09:21:41 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T09:21:54 prefetch.2.10.7: HTTPS download succeed 2020-06-21T09:21:54 prefetch.2.10.7: 11) 'ncbi-acc:NW_001848858.1?vdb-ctx=refseq' was downloaded successfully Read 69244568 spots for SRR4101020/SRR4101020.sra Written 69244568 spots for SRR4101020/SRR4101020.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:13:37 69244568 reads; of these: 69244568 (100.00%) were unpaired; of these: 15051171 (21.74%) aligned 0 times 39512293 (57.06%) aligned exactly 1 time 14681104 (21.20%) aligned >1 times 78.26% overall alignment rate Time searching: 00:13:37 Overall time: 00:13:37 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 1870 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 25337968 / 54193397 = 0.4675 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 18:52:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 18:52:48: #1 read tag files... INFO @ Sun, 21 Jun 2020 18:52:48: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 18:52:54: 1000000 INFO @ Sun, 21 Jun 2020 18:53:00: 2000000 INFO @ Sun, 21 Jun 2020 18:53:06: 3000000 INFO @ Sun, 21 Jun 2020 18:53:12: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 18:53:18: 5000000 INFO @ Sun, 21 Jun 2020 18:53:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 18:53:18: #1 read tag files... INFO @ Sun, 21 Jun 2020 18:53:18: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 18:53:24: 6000000 INFO @ Sun, 21 Jun 2020 18:53:25: 1000000 INFO @ Sun, 21 Jun 2020 18:53:30: 7000000 INFO @ Sun, 21 Jun 2020 18:53:32: 2000000 INFO @ Sun, 21 Jun 2020 18:53:37: 8000000 INFO @ Sun, 21 Jun 2020 18:53:40: 3000000 INFO @ Sun, 21 Jun 2020 18:53:43: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 18:53:47: 4000000 INFO @ Sun, 21 Jun 2020 18:53:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 18:53:48: #1 read tag files... INFO @ Sun, 21 Jun 2020 18:53:48: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 18:53:50: 10000000 INFO @ Sun, 21 Jun 2020 18:53:54: 5000000 INFO @ Sun, 21 Jun 2020 18:53:55: 1000000 INFO @ Sun, 21 Jun 2020 18:53:57: 11000000 INFO @ Sun, 21 Jun 2020 18:54:01: 6000000 INFO @ Sun, 21 Jun 2020 18:54:02: 2000000 INFO @ Sun, 21 Jun 2020 18:54:03: 12000000 INFO @ Sun, 21 Jun 2020 18:54:07: 7000000 INFO @ Sun, 21 Jun 2020 18:54:09: 3000000 INFO @ Sun, 21 Jun 2020 18:54:10: 13000000 INFO @ Sun, 21 Jun 2020 18:54:13: 8000000 INFO @ Sun, 21 Jun 2020 18:54:16: 4000000 INFO @ Sun, 21 Jun 2020 18:54:16: 14000000 INFO @ Sun, 21 Jun 2020 18:54:19: 9000000 INFO @ Sun, 21 Jun 2020 18:54:22: 5000000 INFO @ Sun, 21 Jun 2020 18:54:23: 15000000 INFO @ Sun, 21 Jun 2020 18:54:25: 10000000 INFO @ Sun, 21 Jun 2020 18:54:29: 6000000 INFO @ Sun, 21 Jun 2020 18:54:30: 16000000 INFO @ Sun, 21 Jun 2020 18:54:30: 11000000 INFO @ Sun, 21 Jun 2020 18:54:36: 12000000 INFO @ Sun, 21 Jun 2020 18:54:36: 7000000 INFO @ Sun, 21 Jun 2020 18:54:36: 17000000 INFO @ Sun, 21 Jun 2020 18:54:41: 13000000 INFO @ Sun, 21 Jun 2020 18:54:43: 18000000 INFO @ Sun, 21 Jun 2020 18:54:43: 8000000 INFO @ Sun, 21 Jun 2020 18:54:48: 14000000 INFO @ Sun, 21 Jun 2020 18:54:48: 19000000 INFO @ Sun, 21 Jun 2020 18:54:51: 9000000 INFO @ Sun, 21 Jun 2020 18:54:54: 20000000 INFO @ Sun, 21 Jun 2020 18:54:54: 15000000 INFO @ Sun, 21 Jun 2020 18:54:58: 10000000 INFO @ Sun, 21 Jun 2020 18:55:01: 21000000 INFO @ Sun, 21 Jun 2020 18:55:01: 16000000 INFO @ Sun, 21 Jun 2020 18:55:05: 11000000 INFO @ Sun, 21 Jun 2020 18:55:06: 17000000 INFO @ Sun, 21 Jun 2020 18:55:07: 22000000 INFO @ Sun, 21 Jun 2020 18:55:11: 12000000 INFO @ Sun, 21 Jun 2020 18:55:12: 18000000 INFO @ Sun, 21 Jun 2020 18:55:14: 23000000 INFO @ Sun, 21 Jun 2020 18:55:18: 19000000 INFO @ Sun, 21 Jun 2020 18:55:19: 13000000 INFO @ Sun, 21 Jun 2020 18:55:19: 24000000 INFO @ Sun, 21 Jun 2020 18:55:25: 20000000 INFO @ Sun, 21 Jun 2020 18:55:25: 25000000 INFO @ Sun, 21 Jun 2020 18:55:26: 14000000 INFO @ Sun, 21 Jun 2020 18:55:30: 21000000 INFO @ Sun, 21 Jun 2020 18:55:32: 26000000 INFO @ Sun, 21 Jun 2020 18:55:32: 15000000 INFO @ Sun, 21 Jun 2020 18:55:36: 22000000 INFO @ Sun, 21 Jun 2020 18:55:38: 27000000 INFO @ Sun, 21 Jun 2020 18:55:39: 16000000 INFO @ Sun, 21 Jun 2020 18:55:43: 23000000 INFO @ Sun, 21 Jun 2020 18:55:44: 28000000 INFO @ Sun, 21 Jun 2020 18:55:46: 17000000 INFO @ Sun, 21 Jun 2020 18:55:49: 24000000 INFO @ Sun, 21 Jun 2020 18:55:50: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 18:55:50: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 18:55:50: #1 total tags in treatment: 28855429 INFO @ Sun, 21 Jun 2020 18:55:50: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 18:55:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 18:55:51: #1 tags after filtering in treatment: 28855382 INFO @ Sun, 21 Jun 2020 18:55:51: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 18:55:51: #1 finished! INFO @ Sun, 21 Jun 2020 18:55:51: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 18:55:51: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 18:55:53: 18000000 INFO @ Sun, 21 Jun 2020 18:55:53: #2 number of paired peaks: 686 WARNING @ Sun, 21 Jun 2020 18:55:53: Fewer paired peaks (686) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 686 pairs to build model! INFO @ Sun, 21 Jun 2020 18:55:53: start model_add_line... INFO @ Sun, 21 Jun 2020 18:55:53: start X-correlation... INFO @ Sun, 21 Jun 2020 18:55:53: end of X-cor INFO @ Sun, 21 Jun 2020 18:55:53: #2 finished! INFO @ Sun, 21 Jun 2020 18:55:53: #2 predicted fragment length is 2 bps INFO @ Sun, 21 Jun 2020 18:55:53: #2 alternative fragment length(s) may be 2 bps INFO @ Sun, 21 Jun 2020 18:55:53: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.05_model.r WARNING @ Sun, 21 Jun 2020 18:55:53: #2 Since the d (2) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 18:55:53: #2 You may need to consider one of the other alternative d(s): 2 WARNING @ Sun, 21 Jun 2020 18:55:53: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 18:55:53: #3 Call peaks... INFO @ Sun, 21 Jun 2020 18:55:53: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 18:55:54: 25000000 INFO @ Sun, 21 Jun 2020 18:55:59: 19000000 INFO @ Sun, 21 Jun 2020 18:56:00: 26000000 INFO @ Sun, 21 Jun 2020 18:56:06: 20000000 INFO @ Sun, 21 Jun 2020 18:56:06: 27000000 INFO @ Sun, 21 Jun 2020 18:56:12: 28000000 INFO @ Sun, 21 Jun 2020 18:56:12: 21000000 INFO @ Sun, 21 Jun 2020 18:56:17: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 18:56:17: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 18:56:17: #1 total tags in treatment: 28855429 INFO @ Sun, 21 Jun 2020 18:56:17: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 18:56:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 18:56:18: #1 tags after filtering in treatment: 28855382 INFO @ Sun, 21 Jun 2020 18:56:18: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 18:56:18: #1 finished! INFO @ Sun, 21 Jun 2020 18:56:18: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 18:56:18: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 18:56:18: 22000000 INFO @ Sun, 21 Jun 2020 18:56:20: #2 number of paired peaks: 686 WARNING @ Sun, 21 Jun 2020 18:56:20: Fewer paired peaks (686) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 686 pairs to build model! INFO @ Sun, 21 Jun 2020 18:56:20: start model_add_line... INFO @ Sun, 21 Jun 2020 18:56:20: start X-correlation... INFO @ Sun, 21 Jun 2020 18:56:20: end of X-cor INFO @ Sun, 21 Jun 2020 18:56:20: #2 finished! INFO @ Sun, 21 Jun 2020 18:56:20: #2 predicted fragment length is 2 bps INFO @ Sun, 21 Jun 2020 18:56:20: #2 alternative fragment length(s) may be 2 bps INFO @ Sun, 21 Jun 2020 18:56:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.10_model.r WARNING @ Sun, 21 Jun 2020 18:56:20: #2 Since the d (2) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 18:56:20: #2 You may need to consider one of the other alternative d(s): 2 WARNING @ Sun, 21 Jun 2020 18:56:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 18:56:20: #3 Call peaks... INFO @ Sun, 21 Jun 2020 18:56:20: #3 Pre-compute pvalue-qvalue table... BedGraph に変換しました。 BigWig に変換中... INFO @ Sun, 21 Jun 2020 18:56:25: 23000000 INFO @ Sun, 21 Jun 2020 18:56:30: 24000000 INFO @ Sun, 21 Jun 2020 18:56:33: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 18:56:36: 25000000 INFO @ Sun, 21 Jun 2020 18:56:41: 26000000 INFO @ Sun, 21 Jun 2020 18:56:46: 27000000 INFO @ Sun, 21 Jun 2020 18:56:51: 28000000 INFO @ Sun, 21 Jun 2020 18:56:52: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.05_peaks.xls INFO @ Sun, 21 Jun 2020 18:56:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.05_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 18:56:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.05_summits.bed INFO @ Sun, 21 Jun 2020 18:56:52: Done! pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Sun, 21 Jun 2020 18:56:56: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 18:56:56: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 18:56:56: #1 total tags in treatment: 28855429 INFO @ Sun, 21 Jun 2020 18:56:56: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 18:56:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 18:56:57: #1 tags after filtering in treatment: 28855382 INFO @ Sun, 21 Jun 2020 18:56:57: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 18:56:57: #1 finished! INFO @ Sun, 21 Jun 2020 18:56:57: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 18:56:57: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 18:56:59: #2 number of paired peaks: 686 WARNING @ Sun, 21 Jun 2020 18:56:59: Fewer paired peaks (686) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 686 pairs to build model! INFO @ Sun, 21 Jun 2020 18:56:59: start model_add_line... INFO @ Sun, 21 Jun 2020 18:56:59: start X-correlation... INFO @ Sun, 21 Jun 2020 18:56:59: end of X-cor INFO @ Sun, 21 Jun 2020 18:56:59: #2 finished! INFO @ Sun, 21 Jun 2020 18:56:59: #2 predicted fragment length is 2 bps INFO @ Sun, 21 Jun 2020 18:56:59: #2 alternative fragment length(s) may be 2 bps INFO @ Sun, 21 Jun 2020 18:56:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.20_model.r WARNING @ Sun, 21 Jun 2020 18:56:59: #2 Since the d (2) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 18:56:59: #2 You may need to consider one of the other alternative d(s): 2 WARNING @ Sun, 21 Jun 2020 18:56:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 18:56:59: #3 Call peaks... INFO @ Sun, 21 Jun 2020 18:56:59: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 18:57:02: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 18:57:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.10_peaks.xls INFO @ Sun, 21 Jun 2020 18:57:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.10_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 18:57:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.10_summits.bed INFO @ Sun, 21 Jun 2020 18:57:22: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Sun, 21 Jun 2020 18:57:41: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Sun, 21 Jun 2020 18:58:01: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.20_peaks.xls INFO @ Sun, 21 Jun 2020 18:58:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.20_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 18:58:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX2068664/SRX2068664.20_summits.bed INFO @ Sun, 21 Jun 2020 18:58:01: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling