Job ID = 6453450 SRX = SRX1150358 Genome = dm6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-06-21T08:24:18 prefetch.2.10.7: 1) Downloading 'SRR2163809'... 2020-06-21T08:24:18 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:29:14 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:29:14 prefetch.2.10.7: 1) 'SRR2163809' was downloaded successfully 2020-06-21T08:30:06 prefetch.2.10.7: 'SRR2163809' has 10 unresolved dependencies 2020-06-21T08:30:06 prefetch.2.10.7: 2) Downloading 'ncbi-acc:NC_004353.3?vdb-ctx=refseq'... 2020-06-21T08:30:06 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:30:19 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:30:19 prefetch.2.10.7: 2) 'ncbi-acc:NC_004353.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:30:19 prefetch.2.10.7: 3) Downloading 'ncbi-acc:NC_004354.3?vdb-ctx=refseq'... 2020-06-21T08:30:19 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:31:00 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:31:00 prefetch.2.10.7: 3) 'ncbi-acc:NC_004354.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:31:00 prefetch.2.10.7: 4) Downloading 'ncbi-acc:NS_000188.1?vdb-ctx=refseq'... 2020-06-21T08:31:00 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:31:15 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:31:15 prefetch.2.10.7: 4) 'ncbi-acc:NS_000188.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:31:15 prefetch.2.10.7: 5) Downloading 'ncbi-acc:NT_033777.2?vdb-ctx=refseq'... 2020-06-21T08:31:15 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:31:33 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:31:33 prefetch.2.10.7: 5) 'ncbi-acc:NT_033777.2?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:31:33 prefetch.2.10.7: 6) Downloading 'ncbi-acc:NT_033778.3?vdb-ctx=refseq'... 2020-06-21T08:31:33 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:31:51 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:31:51 prefetch.2.10.7: 6) 'ncbi-acc:NT_033778.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:31:51 prefetch.2.10.7: 7) Downloading 'ncbi-acc:NT_033779.4?vdb-ctx=refseq'... 2020-06-21T08:31:51 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:32:08 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:32:08 prefetch.2.10.7: 7) 'ncbi-acc:NT_033779.4?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:32:08 prefetch.2.10.7: 8) Downloading 'ncbi-acc:NT_037436.3?vdb-ctx=refseq'... 2020-06-21T08:32:08 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:32:27 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:32:27 prefetch.2.10.7: 8) 'ncbi-acc:NT_037436.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:32:27 prefetch.2.10.7: 9) Downloading 'ncbi-acc:NW_001848856.1?vdb-ctx=refseq'... 2020-06-21T08:32:27 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:32:40 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:32:40 prefetch.2.10.7: 9) 'ncbi-acc:NW_001848856.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:32:40 prefetch.2.10.7: 10) Downloading 'ncbi-acc:NW_001848857.1?vdb-ctx=refseq'... 2020-06-21T08:32:40 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:32:53 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:32:53 prefetch.2.10.7: 10) 'ncbi-acc:NW_001848857.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:32:53 prefetch.2.10.7: 11) Downloading 'ncbi-acc:NW_001848858.1?vdb-ctx=refseq'... 2020-06-21T08:32:53 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:33:06 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:33:06 prefetch.2.10.7: 11) 'ncbi-acc:NW_001848858.1?vdb-ctx=refseq' was downloaded successfully Read 49625856 spots for SRR2163809/SRR2163809.sra Written 49625856 spots for SRR2163809/SRR2163809.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:13:14 49625856 reads; of these: 49625856 (100.00%) were unpaired; of these: 1010836 (2.04%) aligned 0 times 28490573 (57.41%) aligned exactly 1 time 20124447 (40.55%) aligned >1 times 97.96% overall alignment rate Time searching: 00:13:14 Overall time: 00:13:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 1870 sequences. [bam_sort_core] merging from 20 files... [bam_rmdupse_core] 11867392 / 48615020 = 0.2441 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 17:59:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 17:59:16: #1 read tag files... INFO @ Sun, 21 Jun 2020 17:59:16: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 17:59:21: 1000000 INFO @ Sun, 21 Jun 2020 17:59:27: 2000000 INFO @ Sun, 21 Jun 2020 17:59:32: 3000000 INFO @ Sun, 21 Jun 2020 17:59:38: 4000000 INFO @ Sun, 21 Jun 2020 17:59:44: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 17:59:46: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 17:59:46: #1 read tag files... INFO @ Sun, 21 Jun 2020 17:59:46: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 17:59:50: 6000000 INFO @ Sun, 21 Jun 2020 17:59:51: 1000000 INFO @ Sun, 21 Jun 2020 17:59:55: 7000000 INFO @ Sun, 21 Jun 2020 17:59:56: 2000000 INFO @ Sun, 21 Jun 2020 18:00:01: 8000000 INFO @ Sun, 21 Jun 2020 18:00:01: 3000000 INFO @ Sun, 21 Jun 2020 18:00:06: 4000000 INFO @ Sun, 21 Jun 2020 18:00:07: 9000000 INFO @ Sun, 21 Jun 2020 18:00:12: 5000000 INFO @ Sun, 21 Jun 2020 18:00:13: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 18:00:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 18:00:16: #1 read tag files... INFO @ Sun, 21 Jun 2020 18:00:16: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 18:00:17: 6000000 INFO @ Sun, 21 Jun 2020 18:00:19: 11000000 INFO @ Sun, 21 Jun 2020 18:00:21: 1000000 INFO @ Sun, 21 Jun 2020 18:00:22: 7000000 INFO @ Sun, 21 Jun 2020 18:00:24: 12000000 INFO @ Sun, 21 Jun 2020 18:00:26: 2000000 INFO @ Sun, 21 Jun 2020 18:00:27: 8000000 INFO @ Sun, 21 Jun 2020 18:00:30: 13000000 INFO @ Sun, 21 Jun 2020 18:00:31: 3000000 INFO @ Sun, 21 Jun 2020 18:00:32: 9000000 INFO @ Sun, 21 Jun 2020 18:00:36: 14000000 INFO @ Sun, 21 Jun 2020 18:00:36: 4000000 INFO @ Sun, 21 Jun 2020 18:00:37: 10000000 INFO @ Sun, 21 Jun 2020 18:00:41: 15000000 INFO @ Sun, 21 Jun 2020 18:00:41: 5000000 INFO @ Sun, 21 Jun 2020 18:00:42: 11000000 INFO @ Sun, 21 Jun 2020 18:00:47: 6000000 INFO @ Sun, 21 Jun 2020 18:00:47: 16000000 INFO @ Sun, 21 Jun 2020 18:00:47: 12000000 INFO @ Sun, 21 Jun 2020 18:00:52: 7000000 INFO @ Sun, 21 Jun 2020 18:00:52: 13000000 INFO @ Sun, 21 Jun 2020 18:00:52: 17000000 INFO @ Sun, 21 Jun 2020 18:00:57: 8000000 INFO @ Sun, 21 Jun 2020 18:00:57: 14000000 INFO @ Sun, 21 Jun 2020 18:00:58: 18000000 INFO @ Sun, 21 Jun 2020 18:01:02: 9000000 INFO @ Sun, 21 Jun 2020 18:01:02: 15000000 INFO @ Sun, 21 Jun 2020 18:01:04: 19000000 INFO @ Sun, 21 Jun 2020 18:01:07: 10000000 INFO @ Sun, 21 Jun 2020 18:01:08: 16000000 INFO @ Sun, 21 Jun 2020 18:01:10: 20000000 INFO @ Sun, 21 Jun 2020 18:01:12: 11000000 INFO @ Sun, 21 Jun 2020 18:01:13: 17000000 INFO @ Sun, 21 Jun 2020 18:01:15: 21000000 INFO @ Sun, 21 Jun 2020 18:01:18: 12000000 INFO @ Sun, 21 Jun 2020 18:01:18: 18000000 INFO @ Sun, 21 Jun 2020 18:01:21: 22000000 INFO @ Sun, 21 Jun 2020 18:01:23: 13000000 INFO @ Sun, 21 Jun 2020 18:01:23: 19000000 INFO @ Sun, 21 Jun 2020 18:01:26: 23000000 INFO @ Sun, 21 Jun 2020 18:01:28: 14000000 INFO @ Sun, 21 Jun 2020 18:01:28: 20000000 INFO @ Sun, 21 Jun 2020 18:01:32: 24000000 INFO @ Sun, 21 Jun 2020 18:01:33: 15000000 INFO @ Sun, 21 Jun 2020 18:01:33: 21000000 INFO @ Sun, 21 Jun 2020 18:01:38: 25000000 INFO @ Sun, 21 Jun 2020 18:01:38: 16000000 INFO @ Sun, 21 Jun 2020 18:01:38: 22000000 INFO @ Sun, 21 Jun 2020 18:01:43: 17000000 INFO @ Sun, 21 Jun 2020 18:01:43: 26000000 INFO @ Sun, 21 Jun 2020 18:01:43: 23000000 INFO @ Sun, 21 Jun 2020 18:01:48: 18000000 INFO @ Sun, 21 Jun 2020 18:01:49: 27000000 INFO @ Sun, 21 Jun 2020 18:01:49: 24000000 INFO @ Sun, 21 Jun 2020 18:01:53: 19000000 INFO @ Sun, 21 Jun 2020 18:01:54: 25000000 INFO @ Sun, 21 Jun 2020 18:01:54: 28000000 INFO @ Sun, 21 Jun 2020 18:01:59: 20000000 INFO @ Sun, 21 Jun 2020 18:01:59: 26000000 INFO @ Sun, 21 Jun 2020 18:02:00: 29000000 INFO @ Sun, 21 Jun 2020 18:02:04: 21000000 INFO @ Sun, 21 Jun 2020 18:02:04: 27000000 INFO @ Sun, 21 Jun 2020 18:02:06: 30000000 INFO @ Sun, 21 Jun 2020 18:02:09: 22000000 INFO @ Sun, 21 Jun 2020 18:02:10: 28000000 INFO @ Sun, 21 Jun 2020 18:02:11: 31000000 INFO @ Sun, 21 Jun 2020 18:02:14: 23000000 INFO @ Sun, 21 Jun 2020 18:02:15: 29000000 INFO @ Sun, 21 Jun 2020 18:02:17: 32000000 INFO @ Sun, 21 Jun 2020 18:02:19: 24000000 INFO @ Sun, 21 Jun 2020 18:02:20: 30000000 INFO @ Sun, 21 Jun 2020 18:02:23: 33000000 INFO @ Sun, 21 Jun 2020 18:02:25: 25000000 INFO @ Sun, 21 Jun 2020 18:02:25: 31000000 INFO @ Sun, 21 Jun 2020 18:02:28: 34000000 INFO @ Sun, 21 Jun 2020 18:02:30: 26000000 INFO @ Sun, 21 Jun 2020 18:02:30: 32000000 INFO @ Sun, 21 Jun 2020 18:02:34: 35000000 INFO @ Sun, 21 Jun 2020 18:02:35: 27000000 INFO @ Sun, 21 Jun 2020 18:02:35: 33000000 INFO @ Sun, 21 Jun 2020 18:02:39: 36000000 INFO @ Sun, 21 Jun 2020 18:02:40: 28000000 INFO @ Sun, 21 Jun 2020 18:02:40: 34000000 INFO @ Sun, 21 Jun 2020 18:02:44: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 18:02:44: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 18:02:44: #1 total tags in treatment: 36747628 INFO @ Sun, 21 Jun 2020 18:02:44: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 18:02:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 18:02:45: #1 tags after filtering in treatment: 36747594 INFO @ Sun, 21 Jun 2020 18:02:45: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 18:02:45: #1 finished! INFO @ Sun, 21 Jun 2020 18:02:45: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 18:02:45: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 18:02:46: 35000000 INFO @ Sun, 21 Jun 2020 18:02:46: 29000000 INFO @ Sun, 21 Jun 2020 18:02:47: #2 number of paired peaks: 449 WARNING @ Sun, 21 Jun 2020 18:02:47: Fewer paired peaks (449) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 449 pairs to build model! INFO @ Sun, 21 Jun 2020 18:02:47: start model_add_line... INFO @ Sun, 21 Jun 2020 18:02:48: start X-correlation... INFO @ Sun, 21 Jun 2020 18:02:48: end of X-cor INFO @ Sun, 21 Jun 2020 18:02:48: #2 finished! INFO @ Sun, 21 Jun 2020 18:02:48: #2 predicted fragment length is 1 bps INFO @ Sun, 21 Jun 2020 18:02:48: #2 alternative fragment length(s) may be 1 bps INFO @ Sun, 21 Jun 2020 18:02:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.05_model.r WARNING @ Sun, 21 Jun 2020 18:02:48: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 18:02:48: #2 You may need to consider one of the other alternative d(s): 1 WARNING @ Sun, 21 Jun 2020 18:02:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 18:02:48: #3 Call peaks... INFO @ Sun, 21 Jun 2020 18:02:48: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 18:02:51: 30000000 INFO @ Sun, 21 Jun 2020 18:02:51: 36000000 INFO @ Sun, 21 Jun 2020 18:02:55: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 18:02:55: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 18:02:55: #1 total tags in treatment: 36747628 INFO @ Sun, 21 Jun 2020 18:02:55: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 18:02:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 18:02:56: 31000000 INFO @ Sun, 21 Jun 2020 18:02:56: #1 tags after filtering in treatment: 36747594 INFO @ Sun, 21 Jun 2020 18:02:56: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 18:02:56: #1 finished! INFO @ Sun, 21 Jun 2020 18:02:56: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 18:02:56: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 18:02:59: #2 number of paired peaks: 449 WARNING @ Sun, 21 Jun 2020 18:02:59: Fewer paired peaks (449) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 449 pairs to build model! INFO @ Sun, 21 Jun 2020 18:02:59: start model_add_line... INFO @ Sun, 21 Jun 2020 18:02:59: start X-correlation... INFO @ Sun, 21 Jun 2020 18:02:59: end of X-cor INFO @ Sun, 21 Jun 2020 18:02:59: #2 finished! INFO @ Sun, 21 Jun 2020 18:02:59: #2 predicted fragment length is 1 bps INFO @ Sun, 21 Jun 2020 18:02:59: #2 alternative fragment length(s) may be 1 bps INFO @ Sun, 21 Jun 2020 18:02:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.10_model.r WARNING @ Sun, 21 Jun 2020 18:02:59: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 18:02:59: #2 You may need to consider one of the other alternative d(s): 1 WARNING @ Sun, 21 Jun 2020 18:02:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 18:02:59: #3 Call peaks... INFO @ Sun, 21 Jun 2020 18:02:59: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 18:03:01: 32000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sun, 21 Jun 2020 18:03:06: 33000000 INFO @ Sun, 21 Jun 2020 18:03:11: 34000000 INFO @ Sun, 21 Jun 2020 18:03:16: 35000000 INFO @ Sun, 21 Jun 2020 18:03:21: 36000000 INFO @ Sun, 21 Jun 2020 18:03:25: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 18:03:25: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 18:03:25: #1 total tags in treatment: 36747628 INFO @ Sun, 21 Jun 2020 18:03:25: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 18:03:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 18:03:26: #1 tags after filtering in treatment: 36747594 INFO @ Sun, 21 Jun 2020 18:03:26: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 18:03:26: #1 finished! INFO @ Sun, 21 Jun 2020 18:03:26: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 18:03:26: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 18:03:28: #2 number of paired peaks: 449 WARNING @ Sun, 21 Jun 2020 18:03:28: Fewer paired peaks (449) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 449 pairs to build model! INFO @ Sun, 21 Jun 2020 18:03:28: start model_add_line... INFO @ Sun, 21 Jun 2020 18:03:28: start X-correlation... INFO @ Sun, 21 Jun 2020 18:03:28: end of X-cor INFO @ Sun, 21 Jun 2020 18:03:28: #2 finished! INFO @ Sun, 21 Jun 2020 18:03:28: #2 predicted fragment length is 1 bps INFO @ Sun, 21 Jun 2020 18:03:28: #2 alternative fragment length(s) may be 1 bps INFO @ Sun, 21 Jun 2020 18:03:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.20_model.r WARNING @ Sun, 21 Jun 2020 18:03:28: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 18:03:28: #2 You may need to consider one of the other alternative d(s): 1 WARNING @ Sun, 21 Jun 2020 18:03:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 18:03:28: #3 Call peaks... INFO @ Sun, 21 Jun 2020 18:03:28: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 18:03:39: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 18:03:52: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 18:04:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.05_peaks.xls INFO @ Sun, 21 Jun 2020 18:04:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.05_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 18:04:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.05_summits.bed INFO @ Sun, 21 Jun 2020 18:04:03: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Sun, 21 Jun 2020 18:04:16: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.10_peaks.xls INFO @ Sun, 21 Jun 2020 18:04:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.10_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 18:04:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.10_summits.bed INFO @ Sun, 21 Jun 2020 18:04:16: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Sun, 21 Jun 2020 18:04:20: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Sun, 21 Jun 2020 18:04:45: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.20_peaks.xls INFO @ Sun, 21 Jun 2020 18:04:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.20_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 18:04:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX1150358/SRX1150358.20_summits.bed INFO @ Sun, 21 Jun 2020 18:04:45: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling